Wall clock time and date at job start Tue Mar 31 2020 19:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00102 * 2 1 4 4 C 1.52994 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46919 * 64.99967 * 4 3 2 6 6 C 1.46504 * 119.99537 * 85.00309 * 5 4 3 7 7 H 1.09002 * 109.38878 * 179.97438 * 6 5 4 8 8 C 1.52581 * 109.39001 * 60.19902 * 6 5 4 9 9 C 1.52587 * 110.72471 * 169.27602 * 8 6 5 10 10 C 1.53097 * 109.95843 * 70.67234 * 9 8 6 11 11 S 1.81748 * 108.83880 * 296.97635 * 10 9 8 12 12 C 1.53098 * 109.31177 * 299.75071 * 6 5 4 13 13 S 1.65595 * 120.00193 * 265.00278 * 5 4 3 14 14 O 1.42093 * 104.27762 * 26.07061 * 13 5 4 15 15 O 1.42100 * 104.27495 * 153.92898 * 13 5 4 16 16 C 1.81406 * 104.44793 * 269.99783 * 13 5 4 17 17 C 1.52995 * 109.47029 * 179.97438 * 16 13 5 18 18 C 1.50703 * 109.47340 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99825 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00091 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00160 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99780 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47249 * 60.00417 * 22 20 18 24 24 H 1.48507 * 109.47094 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47278 * 300.00071 * 22 20 18 26 26 H 1.09003 * 109.46686 * 299.99531 * 1 2 3 27 27 H 1.08990 * 109.47592 * 59.99319 * 1 2 3 28 28 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46758 * 60.00237 * 3 2 1 30 30 H 1.09003 * 109.47197 * 300.01262 * 3 2 1 31 31 H 1.08999 * 109.47061 * 305.00771 * 4 3 2 32 32 H 1.08999 * 109.47364 * 185.00003 * 4 3 2 33 33 H 1.09007 * 109.22707 * 289.59179 * 8 6 5 34 34 H 1.08998 * 109.22830 * 48.95209 * 8 6 5 35 35 H 1.09003 * 109.38944 * 190.82127 * 9 8 6 36 36 H 1.08998 * 109.38340 * 310.62172 * 9 8 6 37 37 H 1.09007 * 109.57306 * 56.78286 * 10 9 8 38 38 H 1.08993 * 109.57500 * 177.16625 * 10 9 8 39 39 H 1.09005 * 109.57411 * 302.93619 * 12 6 5 40 40 H 1.09002 * 109.57595 * 63.31443 * 12 6 5 41 41 H 1.08994 * 109.47169 * 299.99932 * 16 13 5 42 42 H 1.09000 * 109.46995 * 60.00314 * 16 13 5 43 43 H 1.08998 * 109.47575 * 300.00590 * 17 16 13 44 44 H 1.09000 * 109.46936 * 60.00326 * 17 16 13 45 45 H 0.97007 * 119.99734 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1808 1.3891 -2.4462 7 1 4.5055 0.7562 -3.2720 8 6 5.2525 2.4367 -2.1598 9 6 5.6805 3.1370 -3.4462 10 6 4.5545 4.0460 -3.9459 11 16 3.1095 3.0213 -4.3521 12 6 2.8645 2.0765 -2.8190 13 16 4.2413 -1.0688 -1.3193 14 8 3.4057 -1.6014 -0.3008 15 8 4.0349 -1.4020 -2.6851 16 6 5.9893 -1.2615 -0.8742 17 6 6.3614 -2.7453 -0.8994 18 6 7.8134 -2.9055 -0.5290 19 1 8.4109 -2.0359 -0.2983 20 6 8.3786 -4.1622 -0.4837 21 7 7.6509 -5.2211 -0.7641 22 14 10.1786 -4.3606 -0.0253 23 1 10.4054 -3.8160 1.3375 24 1 10.5398 -5.8009 -0.0496 25 1 11.0219 -3.6228 -0.9998 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.8514 0.5681 0.8408 32 1 3.9785 2.1765 0.0889 33 1 4.8552 3.1758 -1.4640 34 1 6.1185 1.9508 -1.7104 35 1 6.5705 3.7360 -3.2533 36 1 5.9051 2.3898 -4.2073 37 1 4.2884 4.7600 -3.1663 38 1 4.8849 4.5809 -4.8362 39 1 2.0907 1.3244 -2.9731 40 1 2.5655 2.7520 -2.0175 41 1 6.6081 -0.7191 -1.5889 42 1 6.1555 -0.8626 0.1265 43 1 5.7424 -3.2873 -0.1844 44 1 6.1951 -3.1446 -1.8999 45 1 8.0488 -6.1052 -0.7326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447937951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:12 Heat of formation + Delta-G solvation = -122.216449 kcal Electronic energy + Delta-G solvation = -26828.914037 eV Core-core repulsion = 23099.920098 eV Total energy + Delta-G solvation = -3728.993939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.90861 -37.43053 -36.41881 -35.26015 -34.56762 -33.85515 -31.13125 -30.95796 -29.18816 -27.42130 -26.23637 -25.54979 -23.08417 -22.71265 -21.60703 -20.46921 -18.79811 -17.74691 -16.91521 -16.57103 -16.35134 -15.83364 -15.66697 -15.44853 -15.10749 -14.74929 -14.64556 -14.52652 -14.33869 -13.85589 -13.46574 -13.39153 -13.22033 -12.93092 -12.50614 -12.32113 -12.13682 -11.78618 -11.72156 -11.67291 -11.49379 -11.41805 -11.34813 -11.16288 -11.05555 -10.93450 -10.91334 -10.66993 -10.36483 -10.34967 -10.06982 -9.72770 -9.52896 -9.32846 -8.85052 -8.48452 -7.86389 -6.10446 -4.16169 0.81265 1.54286 2.28656 3.07449 3.27647 3.32547 3.34212 3.82291 4.29200 4.35186 4.43105 4.49894 4.51699 4.68849 4.73810 4.87602 4.96109 5.02662 5.04472 5.14575 5.17934 5.23737 5.24845 5.30957 5.35535 5.40070 5.47892 5.50439 5.65479 5.69221 5.73114 5.74335 5.76026 5.86458 5.90845 6.14281 6.52367 6.63523 7.25406 7.32823 7.39352 7.81963 8.19806 8.86859 9.48351 11.00550 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003897 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.889771 B = 7183.075418 C = 8651.634113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.029 3.971 4 C 0.125 3.875 5 N -0.995 5.995 6 C 0.149 3.851 7 H 0.115 0.885 8 C -0.143 4.143 9 C -0.122 4.122 10 C -0.084 4.084 11 S -0.260 6.260 12 C -0.087 4.087 13 S 2.585 3.415 14 O -0.933 6.933 15 O -0.965 6.965 16 C -0.595 4.595 17 C 0.030 3.970 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 21.046 -1.136 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C -0.050 4.050 4 C -0.001 4.001 5 N -0.829 5.829 6 C 0.041 3.959 7 H 0.133 0.867 8 C -0.182 4.182 9 C -0.162 4.162 10 C -0.232 4.232 11 S -0.034 6.034 12 C -0.237 4.237 13 S 2.683 3.317 14 O -0.923 6.923 15 O -0.955 6.955 16 C -0.728 4.728 17 C -0.009 4.009 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.705 20.011 -2.329 22.814 hybrid contribution 1.949 0.515 1.584 2.564 sum -8.755 20.527 -0.745 22.328 Atomic orbital electron populations 1.22735 0.82112 1.02809 0.99096 1.88277 1.18503 1.25600 1.95091 1.23290 0.94891 0.86485 1.00315 1.21246 0.92415 1.00039 0.86368 1.58064 1.82216 1.27125 1.15484 1.21114 0.93378 0.93219 0.88237 0.86730 1.21976 0.99644 0.98479 0.98114 1.21751 0.97522 0.98995 0.97882 1.23495 0.95514 0.99238 1.04940 1.87042 1.40969 1.50715 1.24682 1.24088 1.01540 1.01437 0.96596 1.06017 0.78643 0.72194 0.74856 1.93613 1.63715 1.75553 1.59415 1.93530 1.85862 1.81304 1.34807 1.30566 1.21417 1.10368 1.10442 1.18932 0.99012 0.84153 0.98846 1.20962 0.94368 0.92767 1.47881 0.92189 1.25061 0.98393 0.95874 0.95097 1.69949 1.36355 0.98473 1.48039 0.86546 0.84570 0.77194 0.79049 1.20102 1.21050 1.20098 0.94540 0.94718 0.89600 0.92900 0.92673 0.88793 0.89254 0.91245 0.89760 0.90281 0.89948 0.89931 0.87704 0.87158 0.89282 0.86654 0.86493 0.94886 0.94988 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.36 -5.25 8.51 -56.11 -0.48 -5.73 16 3 C 0.03 0.31 5.99 37.15 0.22 0.53 16 4 C 0.13 1.34 5.38 -4.04 -0.02 1.32 16 5 N -0.99 -13.09 2.61 -107.47 -0.28 -13.37 16 6 C 0.15 1.72 2.30 -68.09 -0.16 1.57 16 7 H 0.11 1.56 6.78 -51.93 -0.35 1.21 16 8 C -0.14 -1.25 4.62 -27.16 -0.13 -1.38 16 9 C -0.12 -0.96 5.75 -26.89 -0.15 -1.11 16 10 C -0.08 -0.63 6.46 37.21 0.24 -0.39 16 11 S -0.26 -2.76 22.33 -107.50 -2.40 -5.16 16 12 C -0.09 -0.92 4.43 37.21 0.16 -0.76 16 13 S 2.58 47.62 5.36 -107.50 -0.58 47.05 16 14 O -0.93 -19.60 14.89 -65.98 -0.98 -20.58 16 15 O -0.96 -20.54 16.57 -57.54 -0.95 -21.50 16 16 C -0.60 -11.52 6.12 37.15 0.23 -11.29 16 17 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 18 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.53 4.80 -51.93 -0.25 0.28 16 31 H 0.09 1.07 7.61 -51.93 -0.40 0.67 16 32 H 0.09 0.64 6.69 -51.93 -0.35 0.30 16 33 H 0.07 0.49 7.10 -51.92 -0.37 0.13 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.74 8.05 -51.93 -0.42 0.32 16 37 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.11 1.34 8.04 -51.93 -0.42 0.92 16 40 H 0.09 0.77 6.16 -51.93 -0.32 0.45 16 41 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 42 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -35.49 374.97 -10.83 -46.32 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.48 Total: -0.30 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 0.96 Total: -22.66 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.46 Total: -39.29 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.41 Total: -47.81 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 44.86 SS G_CDS: -2.98 Total: 41.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.49 -10.83 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447937951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.899 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds