Wall clock time and date at job start Tue Mar 31 2020 19:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00102 * 2 1 4 4 C 1.52994 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46919 * 64.99967 * 4 3 2 6 6 C 1.46504 * 119.99537 * 85.00309 * 5 4 3 7 7 H 1.09002 * 109.38878 * 179.97438 * 6 5 4 8 8 C 1.52581 * 109.39001 * 60.19902 * 6 5 4 9 9 C 1.52587 * 110.72471 * 169.27602 * 8 6 5 10 10 C 1.53097 * 109.95843 * 70.67234 * 9 8 6 11 11 S 1.81748 * 108.83880 * 296.97635 * 10 9 8 12 12 C 1.53098 * 109.31177 * 299.75071 * 6 5 4 13 13 S 1.65595 * 120.00193 * 265.00278 * 5 4 3 14 14 O 1.42093 * 104.27762 * 26.07061 * 13 5 4 15 15 O 1.42100 * 104.27495 * 153.92898 * 13 5 4 16 16 C 1.81406 * 104.44793 * 269.99783 * 13 5 4 17 17 C 1.52995 * 109.47029 * 179.97438 * 16 13 5 18 18 C 1.50703 * 109.47340 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99825 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00091 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00160 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99780 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47249 * 60.00417 * 22 20 18 24 24 H 1.48507 * 109.47094 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47278 * 300.00071 * 22 20 18 26 26 H 1.09003 * 109.46686 * 299.99531 * 1 2 3 27 27 H 1.08990 * 109.47592 * 59.99319 * 1 2 3 28 28 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46758 * 60.00237 * 3 2 1 30 30 H 1.09003 * 109.47197 * 300.01262 * 3 2 1 31 31 H 1.08999 * 109.47061 * 305.00771 * 4 3 2 32 32 H 1.08999 * 109.47364 * 185.00003 * 4 3 2 33 33 H 1.09007 * 109.22707 * 289.59179 * 8 6 5 34 34 H 1.08998 * 109.22830 * 48.95209 * 8 6 5 35 35 H 1.09003 * 109.38944 * 190.82127 * 9 8 6 36 36 H 1.08998 * 109.38340 * 310.62172 * 9 8 6 37 37 H 1.09007 * 109.57306 * 56.78286 * 10 9 8 38 38 H 1.08993 * 109.57500 * 177.16625 * 10 9 8 39 39 H 1.09005 * 109.57411 * 302.93619 * 12 6 5 40 40 H 1.09002 * 109.57595 * 63.31443 * 12 6 5 41 41 H 1.08994 * 109.47169 * 299.99932 * 16 13 5 42 42 H 1.09000 * 109.46995 * 60.00314 * 16 13 5 43 43 H 1.08998 * 109.47575 * 300.00590 * 17 16 13 44 44 H 1.09000 * 109.46936 * 60.00326 * 17 16 13 45 45 H 0.97007 * 119.99734 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1808 1.3891 -2.4462 7 1 4.5055 0.7562 -3.2720 8 6 5.2525 2.4367 -2.1598 9 6 5.6805 3.1370 -3.4462 10 6 4.5545 4.0460 -3.9459 11 16 3.1095 3.0213 -4.3521 12 6 2.8645 2.0765 -2.8190 13 16 4.2413 -1.0688 -1.3193 14 8 3.4057 -1.6014 -0.3008 15 8 4.0349 -1.4020 -2.6851 16 6 5.9893 -1.2615 -0.8742 17 6 6.3614 -2.7453 -0.8994 18 6 7.8134 -2.9055 -0.5290 19 1 8.4109 -2.0359 -0.2983 20 6 8.3786 -4.1622 -0.4837 21 7 7.6509 -5.2211 -0.7641 22 14 10.1786 -4.3606 -0.0253 23 1 10.4054 -3.8160 1.3375 24 1 10.5398 -5.8009 -0.0496 25 1 11.0219 -3.6228 -0.9998 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.8514 0.5681 0.8408 32 1 3.9785 2.1765 0.0889 33 1 4.8552 3.1758 -1.4640 34 1 6.1185 1.9508 -1.7104 35 1 6.5705 3.7360 -3.2533 36 1 5.9051 2.3898 -4.2073 37 1 4.2884 4.7600 -3.1663 38 1 4.8849 4.5809 -4.8362 39 1 2.0907 1.3244 -2.9731 40 1 2.5655 2.7520 -2.0175 41 1 6.6081 -0.7191 -1.5889 42 1 6.1555 -0.8626 0.1265 43 1 5.7424 -3.2873 -0.1844 44 1 6.1951 -3.1446 -1.8999 45 1 8.0488 -6.1052 -0.7326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447937951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:11 Heat of formation + Delta-G solvation = -146.731282 kcal Electronic energy + Delta-G solvation = -26829.977080 eV Core-core repulsion = 23099.920098 eV Total energy + Delta-G solvation = -3730.056982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.80348 -38.43820 -37.89329 -36.84731 -35.89543 -35.37125 -33.12097 -31.76030 -30.12369 -28.11431 -27.56288 -27.11640 -23.91559 -23.75418 -23.28370 -21.34316 -19.95525 -19.25170 -18.49994 -17.79101 -17.33328 -16.99372 -16.93277 -16.58587 -16.44629 -16.10649 -15.83931 -15.45978 -15.37019 -14.98953 -14.63719 -14.45831 -14.20327 -14.01988 -13.86979 -13.72095 -13.15082 -13.03700 -13.02560 -12.95831 -12.89345 -12.78557 -12.73430 -12.38581 -12.23989 -12.20211 -12.12130 -11.97994 -11.82416 -11.75540 -11.52398 -11.08493 -10.82259 -10.64251 -10.39764 -9.98067 -8.67945 -8.25583 -6.40521 -0.66352 0.77843 1.40548 1.44544 1.52191 1.52869 1.87889 2.38350 2.91806 3.06397 3.07524 3.27108 3.48572 3.74270 3.82469 3.94890 4.01735 4.08780 4.14820 4.17793 4.20846 4.26312 4.44298 4.48101 4.52055 4.55348 4.58613 4.70096 4.73371 4.75877 4.84114 4.88291 4.98875 5.05303 5.11067 5.19074 5.25485 5.26584 5.37311 5.64635 5.67656 6.05611 6.42564 6.72921 7.29874 8.86651 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003897 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.889771 B = 7183.075418 C = 8651.634113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.021 3.979 4 C 0.115 3.885 5 N -0.981 5.981 6 C 0.144 3.856 7 H 0.086 0.914 8 C -0.140 4.140 9 C -0.122 4.122 10 C -0.069 4.069 11 S -0.309 6.309 12 C -0.076 4.076 13 S 2.604 3.396 14 O -0.963 6.963 15 O -1.002 7.002 16 C -0.592 4.592 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.975 3.025 23 H -0.261 1.261 24 H -0.285 1.285 25 H -0.262 1.262 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.003 0.997 44 H 0.000 1.000 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.043 24.830 0.092 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.057 4.057 4 C -0.010 4.010 5 N -0.818 5.818 6 C 0.036 3.964 7 H 0.104 0.896 8 C -0.179 4.179 9 C -0.161 4.161 10 C -0.216 4.216 11 S -0.083 6.083 12 C -0.226 4.226 13 S 2.701 3.299 14 O -0.953 6.953 15 O -0.993 6.993 16 C -0.723 4.723 17 C -0.016 4.016 18 C -0.578 4.578 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.210 1.210 25 H -0.187 1.187 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.160 0.840 43 H 0.022 0.978 44 H 0.018 0.982 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.220 23.806 -1.099 25.552 hybrid contribution 1.415 -0.581 1.164 1.922 sum -7.804 23.224 0.065 24.500 Atomic orbital electron populations 1.22841 0.80966 1.02707 1.00708 1.88219 1.20137 1.28251 1.95445 1.23532 0.94582 0.85386 1.02210 1.21688 0.92946 1.01916 0.84427 1.57563 1.81886 1.25076 1.17282 1.21286 0.95140 0.93340 0.86598 0.89641 1.21994 0.98563 0.98082 0.99244 1.21760 0.98548 0.98877 0.96912 1.23589 0.93240 0.98585 1.06218 1.87258 1.43541 1.51719 1.25781 1.23978 1.00207 1.01233 0.97179 1.05080 0.77773 0.73621 0.73392 1.93569 1.64210 1.77419 1.60101 1.93476 1.86096 1.82972 1.36722 1.30448 1.23092 1.06036 1.12719 1.18776 0.98468 0.88274 0.96068 1.21482 0.95320 0.93568 1.47425 0.90478 1.26151 1.03767 0.95507 0.94843 1.70113 1.38814 0.99131 1.49468 0.85351 0.78124 0.77232 0.79476 1.18578 1.21000 1.18658 0.92324 0.93592 0.90752 0.90018 0.91531 0.89556 0.84516 0.88339 0.89565 0.87720 0.91766 0.87659 0.86513 0.89492 0.86604 0.84561 0.84010 0.97830 0.98181 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -11.65 8.51 -129.02 -1.10 -12.75 16 3 C 0.02 0.40 5.99 71.98 0.43 0.83 16 4 C 0.11 2.13 5.38 86.38 0.46 2.59 16 5 N -0.98 -24.61 2.61 -493.93 -1.29 -25.90 16 6 C 0.14 3.13 2.30 44.88 0.10 3.24 16 7 H 0.09 2.38 6.78 -2.39 -0.02 2.37 16 8 C -0.14 -1.94 4.62 30.32 0.14 -1.80 16 9 C -0.12 -1.50 5.75 30.49 0.18 -1.33 16 10 C -0.07 -0.80 6.46 72.01 0.46 -0.34 16 11 S -0.31 -6.16 22.33 -56.49 -1.26 -7.42 16 12 C -0.08 -1.51 4.43 72.02 0.32 -1.19 16 13 S 2.60 98.64 5.36 -56.49 -0.30 98.34 16 14 O -0.96 -41.98 14.89 -119.58 -1.78 -43.76 16 15 O -1.00 -45.06 16.57 -127.65 -2.11 -47.18 16 16 C -0.59 -23.01 6.12 71.98 0.44 -22.57 16 17 C 0.02 1.24 4.98 29.85 0.15 1.39 16 18 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 19 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 22 Si 0.98 43.37 29.54 68.60 2.03 45.40 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.08 4.80 -2.39 -0.01 1.07 16 31 H 0.09 1.78 7.61 -2.39 -0.02 1.77 16 32 H 0.14 1.24 6.69 -2.39 -0.02 1.23 16 33 H 0.10 0.83 7.10 -2.38 -0.02 0.81 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.05 8.05 -2.39 -0.02 1.03 16 37 H 0.10 0.82 8.14 -2.38 -0.02 0.81 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 2.12 8.04 -2.39 -0.02 2.11 16 40 H 0.12 1.61 6.16 -2.39 -0.01 1.60 16 41 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 42 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -81.89 374.97 0.06 -81.83 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.96 Total: 16.25 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 4.63 Total: -47.19 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.00 Total: -83.52 kcal Atomic # 8 Polarization: -98.69 SS G_CDS: -4.99 Total: -103.69 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 92.48 SS G_CDS: -1.56 Total: 90.91 kcal Total: -81.89 0.06 -81.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447937951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.901 kcal (2) G-P(sol) polarization free energy of solvation -81.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds