Wall clock time and date at job start Tue Mar 31 2020 19:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34233 * 116.99938 * 2 1 4 4 O 1.20823 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99808 * 179.97438 * 3 2 1 6 6 F 1.39905 * 110.88547 * 54.30179 * 5 3 2 7 7 C 1.55154 * 111.00301 * 178.17913 * 5 3 2 8 8 C 1.54316 * 102.94371 * 153.61525 * 7 5 3 9 9 N 1.47022 * 107.27199 * 337.80353 * 8 7 5 10 10 C 1.34779 * 125.64978 * 178.89368 * 9 8 7 11 11 O 1.21577 * 119.99715 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00047 * 0.02757 * 10 9 8 13 13 C 1.39458 * 120.00215 * 175.12856 * 12 10 9 14 14 C 1.38643 * 119.64924 * 185.21619 * 13 12 10 15 15 C 1.40822 * 118.67139 * 179.97438 * 14 13 12 16 16 C 1.41544 * 120.99529 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99868 * 329.43459 * 16 15 14 18 18 C 1.40027 * 120.00216 * 149.44137 * 16 15 14 19 19 N 1.30749 * 120.00193 * 167.70820 * 18 16 15 20 20 Si 1.86803 * 119.99916 * 347.70768 * 18 16 15 21 21 H 1.48502 * 109.46977 * 92.44588 * 20 18 16 22 22 H 1.48501 * 109.47275 * 212.44560 * 20 18 16 23 23 H 1.48500 * 109.47185 * 332.45005 * 20 18 16 24 24 C 1.41163 * 118.00880 * 0.02562 * 15 14 13 25 25 C 1.36596 * 119.12483 * 359.97438 * 24 15 14 26 26 N 1.32061 * 121.25676 * 359.75116 * 25 24 15 27 27 C 1.47430 * 108.70061 * 358.94476 * 9 8 7 28 28 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47506 * 300.00023 * 1 2 3 30 30 H 1.09001 * 109.47022 * 60.00273 * 1 2 3 31 31 H 1.09001 * 110.72064 * 271.98351 * 7 5 3 32 32 H 1.09000 * 110.72042 * 35.06959 * 7 5 3 33 33 H 1.09004 * 109.88459 * 97.22565 * 8 7 5 34 34 H 1.09000 * 109.88289 * 218.23555 * 8 7 5 35 35 H 0.97004 * 120.00143 * 355.13129 * 12 10 9 36 36 H 1.07996 * 120.66463 * 359.95765 * 14 13 12 37 37 H 0.97003 * 119.99736 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.44100 * 179.97438 * 24 15 14 39 39 H 1.08007 * 119.36509 * 179.97438 * 25 24 15 40 40 H 1.09000 * 110.36263 * 265.28316 * 27 9 8 41 41 H 1.08999 * 110.36421 * 142.96419 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 9 4.1047 0.5391 -1.0606 7 6 4.0459 2.7497 -0.0455 8 6 5.4327 2.6834 0.6281 9 7 5.4560 1.4720 1.4609 10 6 6.5010 1.0449 2.1972 11 8 6.4075 0.0237 2.8502 12 7 7.6496 1.7499 2.2095 13 6 8.6949 1.3652 3.0487 14 6 9.8303 2.1559 3.1365 15 6 10.8731 1.7483 3.9906 16 6 12.0543 2.5178 4.1175 17 1 12.4104 3.1023 3.2820 18 6 12.7614 2.5211 5.3262 19 7 13.9656 3.0277 5.3777 20 14 11.9841 1.8016 6.8649 21 1 12.3674 0.3725 6.9912 22 1 12.4608 2.5491 8.0562 23 1 10.5062 1.9112 6.7705 24 6 10.7056 0.5487 4.7156 25 6 9.5503 -0.1641 4.5637 26 7 8.5901 0.2508 3.7575 27 6 4.1474 0.8011 1.3561 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.1337 3.0947 -1.0758 32 1 3.3704 3.3927 0.5186 33 1 6.2118 2.6258 -0.1321 34 1 5.5857 3.5660 1.2493 35 1 7.7492 2.5250 1.6348 36 1 9.9136 3.0661 2.5612 37 1 14.4552 3.0303 6.2151 38 1 11.4806 0.1991 5.3816 39 1 9.4182 -1.0827 5.1162 40 1 3.4973 1.1077 2.1756 41 1 4.2750 -0.2814 1.3566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:46 Heat of formation + Delta-G solvation = -119.896701 kcal Electronic energy + Delta-G solvation = -28586.101498 eV Core-core repulsion = 24187.843775 eV Total energy + Delta-G solvation = -4398.257723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.127 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.20777 -41.90457 -41.53423 -40.22703 -38.46779 -37.64563 -36.24572 -35.47849 -33.24169 -32.80004 -30.84441 -30.49676 -28.62647 -27.92172 -25.93234 -23.99904 -23.82153 -23.33586 -21.63693 -21.06360 -19.99688 -19.49550 -19.30567 -18.26400 -18.03933 -17.76589 -17.34291 -17.00318 -16.61748 -16.39012 -16.20678 -16.00662 -15.89681 -15.70245 -15.16925 -14.90849 -14.63932 -14.44823 -14.31065 -14.24527 -14.12736 -13.85376 -13.40280 -13.13730 -13.00193 -12.93829 -12.68730 -12.61294 -12.53924 -12.29678 -11.94763 -11.77999 -11.73537 -11.50507 -11.39462 -11.19370 -10.16095 -9.87900 -9.72339 -8.97684 -8.94420 -6.71537 0.58155 0.62046 0.76304 1.05384 1.29492 1.42018 1.48397 1.49718 2.07737 2.12529 2.58852 2.70503 2.77476 2.88290 3.20772 3.51437 3.55331 3.77644 3.94082 4.04052 4.21391 4.30105 4.36129 4.43164 4.44144 4.57858 4.61103 4.62669 4.68616 4.70720 4.76225 4.88440 5.02748 5.05494 5.20808 5.26840 5.40687 5.68789 5.78033 6.09331 6.25865 6.29056 6.51530 6.66963 6.73325 7.39477 7.72354 8.11625 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.002284 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.666394 B =12257.493142 C =12649.170911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.493 6.493 5 C 0.118 3.882 6 F -0.178 7.178 7 C -0.122 4.122 8 C 0.087 3.913 9 N -0.635 5.635 10 C 0.713 3.287 11 O -0.570 6.570 12 N -0.653 5.653 13 C 0.378 3.622 14 C -0.294 4.294 15 C 0.115 3.885 16 C -0.465 4.465 17 H 0.070 0.930 18 C 0.054 3.946 19 N -0.835 5.835 20 Si 0.967 3.033 21 H -0.254 1.254 22 H -0.277 1.277 23 H -0.259 1.259 24 C -0.309 4.309 25 C 0.136 3.864 26 N -0.573 5.573 27 C 0.116 3.884 28 H 0.132 0.868 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.425 0.575 36 H 0.130 0.870 37 H 0.298 0.702 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.101 0.899 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.362 0.251 -10.474 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.380 6.380 5 C 0.098 3.902 6 F -0.158 7.158 7 C -0.160 4.160 8 C -0.035 4.035 9 N -0.376 5.376 10 C 0.415 3.585 11 O -0.443 6.443 12 N -0.302 5.302 13 C 0.149 3.851 14 C -0.320 4.320 15 C 0.107 3.893 16 C -0.496 4.496 17 H 0.088 0.912 18 C -0.164 4.164 19 N -0.461 5.461 20 Si 0.791 3.209 21 H -0.179 1.179 22 H -0.204 1.204 23 H -0.184 1.184 24 C -0.333 4.333 25 C -0.017 4.017 26 N -0.293 5.293 27 C -0.008 4.008 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.172 0.828 40 H 0.119 0.881 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.176 -0.643 -9.998 26.169 hybrid contribution 0.938 0.588 0.222 1.129 sum -23.238 -0.055 -9.776 25.210 Atomic orbital electron populations 1.23728 0.73456 1.06289 1.03319 1.86569 1.26080 1.31867 1.82638 1.23305 0.90750 0.82304 0.72870 1.90709 1.66287 1.36519 1.44513 1.21828 0.86007 0.95750 0.86622 1.92976 1.86555 1.78844 1.57405 1.23265 0.95969 0.90710 1.06026 1.22448 0.98597 0.87658 0.94777 1.47433 1.12009 1.28082 1.50053 1.15568 0.79762 0.82954 0.80255 1.91017 1.81825 1.25318 1.46148 1.42355 1.11971 1.32707 1.43210 1.18012 0.86279 0.90719 0.90075 1.21352 0.94524 1.03704 1.12423 1.17879 0.91469 0.90451 0.89540 1.19450 1.05012 1.25350 0.99759 0.91156 1.26768 0.93679 0.92603 1.03316 1.69621 1.10308 1.35587 1.30575 0.85490 0.80242 0.78905 0.76272 1.17931 1.20419 1.18356 1.21805 1.01556 0.99403 1.10513 1.21978 0.88202 0.98133 0.93433 1.67421 1.32119 1.16424 1.13344 1.22485 0.84040 0.99814 0.94464 0.85021 0.90981 0.91061 0.85445 0.85939 0.89050 0.87904 0.73647 0.85198 0.89150 0.86906 0.82794 0.88055 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.56 113.37 1.20 1.43 16 2 O -0.36 -5.91 10.57 -51.45 -0.54 -6.45 16 3 C 0.47 8.20 7.05 71.24 0.50 8.70 16 4 O -0.49 -9.62 15.45 21.97 0.34 -9.28 16 5 C 0.12 2.03 1.58 -10.15 -0.02 2.02 16 6 F -0.18 -3.67 17.01 44.97 0.76 -2.91 16 7 C -0.12 -1.42 5.91 31.78 0.19 -1.24 16 8 C 0.09 1.24 6.16 86.73 0.53 1.77 16 9 N -0.64 -15.31 3.33 -829.78 -2.76 -18.07 16 10 C 0.71 24.77 8.45 179.06 1.51 26.28 16 11 O -0.57 -25.35 14.86 -3.96 -0.06 -25.40 16 12 N -0.65 -22.02 5.35 -322.38 -1.72 -23.74 16 13 C 0.38 16.38 7.42 132.76 0.99 17.37 16 14 C -0.29 -13.11 9.74 23.00 0.22 -12.89 16 15 C 0.12 5.73 5.16 -21.11 -0.11 5.62 16 16 C -0.46 -24.69 9.67 23.52 0.23 -24.46 16 17 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 18 C 0.05 2.74 5.48 85.29 0.47 3.20 16 19 N -0.84 -43.37 13.92 21.84 0.30 -43.07 16 20 Si 0.97 41.56 24.42 68.60 1.68 43.24 16 21 H -0.25 -10.29 6.67 99.48 0.66 -9.63 16 22 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.26 -11.72 6.66 99.48 0.66 -11.05 16 24 C -0.31 -14.69 7.07 22.60 0.16 -14.53 16 25 C 0.14 6.18 11.10 84.27 0.94 7.11 16 26 N -0.57 -27.41 7.85 -194.27 -1.53 -28.93 16 27 C 0.12 2.45 6.18 86.85 0.54 2.98 16 28 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 30 H 0.07 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.12 1.25 7.35 -2.39 -0.02 1.24 16 33 H 0.09 1.10 8.12 -2.38 -0.02 1.09 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.42 10.52 7.68 -92.71 -0.71 9.80 16 36 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 37 H 0.30 13.86 8.29 -92.71 -0.77 13.09 16 38 H 0.11 5.17 4.43 -2.91 -0.01 5.16 16 39 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 40 H 0.10 1.88 8.03 -2.39 -0.02 1.86 16 41 H 0.09 2.21 8.04 -2.39 -0.02 2.19 16 Total: -1.00 -73.21 351.52 4.11 -69.09 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.30 Total: 22.15 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 7.34 Total: 23.38 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -5.71 Total: -113.81 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.26 Total: -41.14 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.76 Total: -2.91 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.68 Total: 43.24 kcal Total: -73.21 4.11 -69.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.803 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds