Wall clock time and date at job start Tue Mar 31 2020 19:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00369 * 2 1 4 4 O 1.20826 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00404 * 180.02562 * 3 2 1 6 6 F 1.39898 * 110.91641 * 313.90016 * 5 3 2 7 7 C 1.55160 * 111.00411 * 189.99498 * 5 3 2 8 8 C 1.54320 * 102.94170 * 206.42293 * 7 5 3 9 9 N 1.47013 * 107.27339 * 22.19791 * 8 7 5 10 10 C 1.34778 * 125.65082 * 181.02238 * 9 8 7 11 11 O 1.21579 * 120.00031 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00101 * 0.02562 * 10 9 8 13 13 C 1.39244 * 120.00207 * 185.16154 * 12 10 9 14 14 C 1.39683 * 119.57407 * 174.71425 * 13 12 10 15 15 C 1.38648 * 119.49149 * 179.75109 * 14 13 12 16 16 C 1.38347 * 118.67226 * 0.50970 * 15 14 13 17 17 C 1.40572 * 119.13143 * 359.73261 * 16 15 14 18 18 C 1.41339 * 119.78554 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00312 * 0.02562 * 18 17 16 20 20 C 1.40032 * 119.99578 * 180.02562 * 18 17 16 21 21 N 1.30737 * 119.99936 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99593 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47142 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46865 * 119.99919 * 22 20 18 25 25 H 1.48493 * 109.46899 * 239.99644 * 22 20 18 26 26 N 1.31909 * 119.57538 * 354.98594 * 13 12 10 27 27 C 1.47427 * 108.70327 * 1.28279 * 9 8 7 28 28 H 1.08999 * 109.47268 * 60.00336 * 1 2 3 29 29 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47184 * 300.00094 * 1 2 3 31 31 H 1.09007 * 110.71329 * 88.06274 * 7 5 3 32 32 H 1.09000 * 110.72443 * 324.79218 * 7 5 3 33 33 H 1.09001 * 109.88296 * 262.77553 * 8 7 5 34 34 H 1.09001 * 110.00762 * 141.69045 * 8 7 5 35 35 H 0.96999 * 119.99498 * 4.88091 * 12 10 9 36 36 H 1.08000 * 120.25176 * 0.02562 * 14 13 12 37 37 H 1.08005 * 120.66241 * 180.24851 * 15 14 13 38 38 H 1.08005 * 120.43571 * 179.71163 * 16 15 14 39 39 H 0.97005 * 119.99782 * 180.02562 * 21 20 18 40 40 H 1.09005 * 110.36529 * 94.48718 * 27 9 8 41 41 H 1.08997 * 110.36836 * 216.80753 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 9 4.1129 0.3959 0.9406 7 6 4.0471 2.7285 0.2509 8 6 5.4284 2.7594 -0.4365 9 7 5.4443 1.6788 -1.4332 10 6 6.4825 1.3624 -2.2322 11 8 6.3829 0.4448 -3.0237 12 7 7.6312 2.0631 -2.1540 13 6 8.6649 1.8079 -3.0513 14 6 9.8068 2.6123 -3.0344 15 6 10.8373 2.3534 -3.9251 16 6 10.6965 1.3049 -4.8166 17 6 9.5206 0.5351 -4.7874 18 6 9.3620 -0.5390 -5.6922 19 1 10.1428 -0.7664 -6.4028 20 6 8.1923 -1.3085 -5.6673 21 7 7.2472 -1.0335 -4.8068 22 14 7.9829 -2.7285 -6.8628 23 1 9.1869 -2.8306 -7.7259 24 1 7.8087 -3.9929 -6.1037 25 1 6.7863 -2.4905 -7.7093 26 7 8.5511 0.8129 -3.9098 27 6 4.1344 1.0026 -1.4182 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 4.1435 2.9233 1.3191 32 1 3.3692 3.4447 -0.2132 33 1 6.2136 2.5948 0.3014 34 1 5.5785 3.7202 -0.9290 35 1 7.7361 2.7480 -1.4752 36 1 9.8881 3.4269 -2.3300 37 1 11.7303 2.9609 -3.9258 38 1 11.4795 1.0809 -5.5259 39 1 6.4371 -1.5668 -4.7893 40 1 3.4798 1.4268 -2.1797 41 1 4.2585 -0.0685 -1.5774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:52 Heat of formation + Delta-G solvation = -77.827517 kcal Electronic energy + Delta-G solvation = -29422.662878 eV Core-core repulsion = 25026.229412 eV Total energy + Delta-G solvation = -4396.433467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.16706 -40.91039 -39.75550 -38.16803 -37.14450 -36.36990 -34.12419 -33.02437 -31.50824 -30.26978 -29.76488 -28.93458 -27.87486 -25.60428 -24.49387 -22.98523 -21.78668 -21.16911 -20.65649 -19.30698 -18.60230 -18.20291 -17.47010 -17.19107 -16.77952 -16.16911 -15.59816 -15.42729 -15.22189 -14.76941 -14.59949 -14.45140 -14.26585 -13.77898 -13.65362 -13.55545 -13.23336 -12.91126 -12.81490 -12.64522 -12.44296 -12.07845 -12.00397 -11.90701 -11.69308 -11.29774 -11.21065 -11.15550 -10.92266 -10.78479 -10.61749 -10.45549 -9.89760 -9.72874 -9.22419 -9.02860 -8.35028 -7.94816 -7.22888 -6.95529 -6.10314 -4.37585 1.54239 2.02274 2.83577 2.93326 3.12631 3.19686 3.23097 3.28442 3.60890 3.83583 4.02452 4.07599 4.08865 4.45335 4.46792 4.70338 4.74754 4.83711 4.93460 4.96227 5.17281 5.35887 5.42107 5.53891 5.60935 5.71105 5.84816 6.04542 6.07414 6.22695 6.50188 6.68777 6.79732 6.86175 7.15243 7.21158 7.33379 7.61904 7.70754 7.82536 8.16179 8.27085 8.57709 8.79241 9.07230 9.47608 10.26918 10.51114 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.003470 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.338843 B = 8066.235958 C = 9869.595262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.343 6.343 3 C 0.464 3.536 4 O -0.485 6.485 5 C 0.115 3.885 6 F -0.169 7.169 7 C -0.134 4.134 8 C 0.098 3.902 9 N -0.645 5.645 10 C 0.687 3.313 11 O -0.452 6.452 12 N -0.667 5.667 13 C 0.386 3.614 14 C -0.357 4.357 15 C -0.035 4.035 16 C -0.305 4.305 17 C 0.271 3.729 18 C -0.424 4.424 19 H 0.083 0.917 20 C 0.057 3.943 21 N -0.651 5.651 22 Si 0.895 3.105 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.276 1.276 26 N -0.473 5.473 27 C 0.125 3.875 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 5.106 11.393 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.259 6.259 3 C 0.304 3.696 4 O -0.371 6.371 5 C 0.094 3.906 6 F -0.149 7.149 7 C -0.172 4.172 8 C -0.025 4.025 9 N -0.390 5.390 10 C 0.388 3.612 11 O -0.314 6.314 12 N -0.315 5.315 13 C 0.146 3.854 14 C -0.383 4.383 15 C -0.060 4.060 16 C -0.328 4.328 17 C 0.146 3.854 18 C -0.455 4.455 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.269 5.269 22 Si 0.719 3.281 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.201 1.201 26 N -0.191 5.191 27 C 0.000 4.000 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.229 0.771 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.434 3.998 10.762 17.671 hybrid contribution 0.462 0.379 0.160 0.618 sum -12.972 4.376 10.922 17.513 Atomic orbital electron populations 1.23397 0.75505 1.04330 1.02805 1.86590 1.24028 1.32238 1.83020 1.23485 0.91002 0.82188 0.72971 1.90700 1.66096 1.36186 1.44156 1.21866 0.85583 0.91845 0.91257 1.92980 1.86168 1.70185 1.65566 1.23220 0.97388 0.92698 1.03852 1.21984 0.96652 0.92217 0.91676 1.47744 1.13179 1.36134 1.41908 1.15902 0.79447 0.83957 0.81933 1.91415 1.79019 1.26545 1.34439 1.42499 1.13611 1.40312 1.35128 1.18318 0.84822 0.92372 0.89840 1.20414 0.98471 1.08253 1.11125 1.20545 0.95893 0.95578 0.93948 1.21624 1.01639 1.03252 1.06325 1.18385 0.86174 0.91248 0.89585 1.19618 1.01789 1.09749 1.14297 0.89906 1.26191 0.96229 0.98539 0.96282 1.70342 1.02925 1.29847 1.23799 0.86478 0.79149 0.81466 0.81004 1.18609 1.20066 1.20108 1.68661 1.29079 1.15196 1.06215 1.22314 0.85061 1.01353 0.91254 0.91403 0.87551 0.91614 0.88007 0.87061 0.91017 0.90580 0.77079 0.89125 0.88566 0.88539 0.91677 0.89745 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.34 -3.75 10.55 -39.26 -0.41 -4.16 16 3 C 0.46 5.35 7.03 36.00 0.25 5.60 16 4 O -0.49 -6.05 15.43 -18.75 -0.29 -6.34 16 5 C 0.12 1.34 1.59 -89.50 -0.14 1.20 16 6 F -0.17 -2.23 17.01 2.25 0.04 -2.19 16 7 C -0.13 -1.24 5.98 -24.90 -0.15 -1.39 16 8 C 0.10 1.06 6.16 -3.07 -0.02 1.04 16 9 N -0.64 -10.01 3.32 -176.10 -0.59 -10.59 16 10 C 0.69 14.36 8.45 -86.91 -0.73 13.62 16 11 O -0.45 -11.63 12.35 5.30 0.07 -11.56 16 12 N -0.67 -13.42 5.34 -15.78 -0.08 -13.50 16 13 C 0.39 9.49 7.43 -154.99 -1.15 8.34 16 14 C -0.36 -8.00 9.95 -38.89 -0.39 -8.39 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.31 -7.71 9.83 -38.66 -0.38 -8.09 16 17 C 0.27 7.67 6.55 -85.00 -0.56 7.11 16 18 C -0.42 -11.73 9.14 -37.73 -0.34 -12.08 16 19 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 20 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 21 N -0.65 -18.22 8.98 55.55 0.50 -17.72 16 22 Si 0.89 19.39 29.56 -169.99 -5.02 14.36 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 N -0.47 -13.41 5.74 -10.26 -0.06 -13.47 16 27 C 0.13 1.73 6.19 -2.41 -0.01 1.72 16 28 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.11 0.98 7.26 -51.93 -0.38 0.60 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.40 6.19 7.68 -40.82 -0.31 5.88 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 39 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 40 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 41 H 0.10 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -34.86 354.25 -8.44 -43.31 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.87 Total: 6.33 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -3.05 Total: 10.20 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.23 Total: -55.28 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.64 Total: -22.06 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.86 -8.44 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.521 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds