Wall clock time and date at job start Tue Mar 31 2020 19:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00018 * 2 1 4 4 O 1.20827 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00382 * 180.02562 * 3 2 1 6 6 F 1.39899 * 110.88878 * 54.29734 * 5 3 2 7 7 C 1.55154 * 111.00825 * 178.18255 * 5 3 2 8 8 C 1.54320 * 102.94339 * 153.61208 * 7 5 3 9 9 N 1.47023 * 107.27205 * 337.80696 * 8 7 5 10 10 C 1.34774 * 125.64732 * 178.98822 * 9 8 7 11 11 O 1.21578 * 119.99853 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99958 * 359.97363 * 10 9 8 13 13 C 1.39251 * 119.99871 * 174.84861 * 12 10 9 14 14 C 1.39689 * 119.57602 * 185.39361 * 13 12 10 15 15 C 1.38642 * 119.49523 * 179.75358 * 14 13 12 16 16 C 1.38360 * 118.67100 * 0.51197 * 15 14 13 17 17 C 1.40569 * 119.12858 * 359.72707 * 16 15 14 18 18 C 1.41331 * 119.78722 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99917 * 0.02952 * 18 17 16 20 20 C 1.40031 * 120.00168 * 180.02562 * 18 17 16 21 21 N 1.30740 * 120.00064 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99811 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46973 * 120.00568 * 22 20 18 25 25 H 1.48502 * 109.47084 * 239.99787 * 22 20 18 26 26 N 1.31906 * 119.57376 * 5.66427 * 13 12 10 27 27 C 1.47422 * 108.70064 * 358.93758 * 9 8 7 28 28 H 1.09003 * 109.46880 * 299.99445 * 1 2 3 29 29 H 1.08996 * 109.48054 * 59.99626 * 1 2 3 30 30 H 1.09008 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.71717 * 271.97913 * 7 5 3 32 32 H 1.09007 * 110.72182 * 35.07281 * 7 5 3 33 33 H 1.09005 * 109.88351 * 97.22883 * 8 7 5 34 34 H 1.09008 * 109.87920 * 218.39042 * 8 7 5 35 35 H 0.96997 * 120.00381 * 354.85192 * 12 10 9 36 36 H 1.08002 * 120.24921 * 359.97438 * 14 13 12 37 37 H 1.07998 * 120.66876 * 180.24493 * 15 14 13 38 38 H 1.07994 * 120.43440 * 179.75193 * 16 15 14 39 39 H 0.97003 * 120.00050 * 180.02562 * 21 20 18 40 40 H 1.08991 * 110.36872 * 265.28708 * 27 9 8 41 41 H 1.09005 * 110.36162 * 142.96759 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 9 4.1039 0.5396 -1.0623 7 6 4.0458 2.7498 -0.0464 8 6 5.4331 2.6832 0.6262 9 7 5.4571 1.4714 1.4583 10 6 6.5020 1.0449 2.1950 11 8 6.4088 0.0238 2.8482 12 7 7.6503 1.7505 2.2075 13 6 8.6918 1.3705 3.0501 14 6 9.8330 2.1711 3.1401 15 6 10.8667 1.7938 3.9834 16 6 10.7389 0.6214 4.7069 17 6 9.5677 -0.1436 4.5689 18 6 9.4227 -1.3438 5.3010 19 1 10.2102 -1.6703 5.9641 20 6 8.2581 -2.1096 5.1666 21 7 7.3050 -1.7146 4.3635 22 14 8.0663 -3.6956 6.1347 23 1 9.2767 -3.9177 6.9658 24 1 6.8737 -3.5975 7.0141 25 1 7.8955 -4.8321 5.1942 26 7 8.5903 0.2564 3.7489 27 6 4.1484 0.8006 1.3544 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.1328 3.0951 -1.0766 32 1 3.3707 3.3926 0.5186 33 1 6.2117 2.6260 -0.1346 34 1 5.5854 3.5642 1.2498 35 1 7.7512 2.5230 1.6297 36 1 9.9078 3.0789 2.5598 37 1 11.7559 2.4006 4.0705 38 1 11.5285 0.2984 5.3692 39 1 6.4981 -2.2448 4.2707 40 1 3.4990 1.1068 2.1744 41 1 4.2760 -0.2819 1.3543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:56 Heat of formation + Delta-G solvation = -77.747161 kcal Electronic energy + Delta-G solvation = -29428.123014 eV Core-core repulsion = 25031.693032 eV Total energy + Delta-G solvation = -4396.429982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.127 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.18811 -40.91122 -39.75335 -38.16146 -37.13686 -36.39526 -34.12202 -33.02367 -31.51547 -30.26865 -29.78058 -28.93166 -27.85512 -25.60352 -24.49196 -22.98515 -21.78408 -21.16641 -20.67315 -19.30221 -18.58206 -18.19866 -17.46090 -17.24791 -16.77008 -16.16198 -15.60317 -15.43498 -15.23243 -14.76656 -14.60532 -14.45104 -14.26771 -13.77856 -13.65308 -13.53520 -13.24948 -12.91184 -12.81495 -12.64219 -12.44673 -12.06591 -12.00218 -11.90419 -11.69348 -11.30626 -11.21091 -11.15446 -10.92254 -10.79545 -10.61679 -10.45503 -9.89759 -9.72578 -9.22103 -9.02767 -8.34724 -7.94737 -7.22930 -6.95418 -6.10296 -4.37517 1.53854 2.02029 2.83590 2.92887 3.12688 3.19714 3.23127 3.28485 3.59252 3.84639 4.04111 4.07954 4.08894 4.45260 4.46260 4.71101 4.74781 4.83623 4.93276 4.96229 5.17406 5.36766 5.42325 5.54541 5.62045 5.70974 5.84230 6.04523 6.07771 6.23038 6.50282 6.68977 6.79915 6.86306 7.14334 7.21331 7.33585 7.62015 7.70892 7.82609 8.16289 8.27208 8.57883 8.79329 9.07299 9.47828 10.26980 10.51153 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.003484 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.998431 B = 8034.276927 C = 9855.207144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.343 6.343 3 C 0.464 3.536 4 O -0.485 6.485 5 C 0.116 3.884 6 F -0.169 7.169 7 C -0.133 4.133 8 C 0.098 3.902 9 N -0.645 5.645 10 C 0.687 3.313 11 O -0.452 6.452 12 N -0.667 5.667 13 C 0.386 3.614 14 C -0.357 4.357 15 C -0.035 4.035 16 C -0.305 4.305 17 C 0.271 3.729 18 C -0.424 4.424 19 H 0.083 0.917 20 C 0.057 3.943 21 N -0.651 5.651 22 Si 0.895 3.105 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.275 1.275 26 N -0.473 5.473 27 C 0.124 3.876 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.084 0.916 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 6.658 -10.095 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.259 6.259 3 C 0.304 3.696 4 O -0.371 6.371 5 C 0.095 3.905 6 F -0.149 7.149 7 C -0.171 4.171 8 C -0.026 4.026 9 N -0.390 5.390 10 C 0.388 3.612 11 O -0.314 6.314 12 N -0.316 5.316 13 C 0.146 3.854 14 C -0.383 4.383 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.146 3.854 18 C -0.454 4.454 19 H 0.101 0.899 20 C -0.173 4.173 21 N -0.269 5.269 22 Si 0.719 3.281 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.201 1.201 26 N -0.191 5.191 27 C -0.001 4.001 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.229 0.771 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.564 5.470 -9.666 17.531 hybrid contribution 0.459 0.398 -0.124 0.620 sum -13.105 5.868 -9.790 17.379 Atomic orbital electron populations 1.23401 0.75480 1.04357 1.02796 1.86589 1.24055 1.32223 1.82989 1.23476 0.90990 0.82176 0.72985 1.90699 1.66165 1.36210 1.44011 1.21825 0.85708 0.94633 0.88342 1.92983 1.86426 1.78431 1.57038 1.23197 0.97232 0.92271 1.04358 1.21994 0.96601 0.89458 0.94503 1.47749 1.12969 1.26618 1.51651 1.15898 0.79423 0.84606 0.81308 1.91413 1.79212 1.20504 1.40305 1.42500 1.13277 1.32187 1.43600 1.18319 0.84729 0.92043 0.90264 1.20414 0.98437 1.04975 1.14437 1.20545 0.95901 0.95223 0.94293 1.21623 1.01631 1.00040 1.09562 1.18384 0.86138 0.92069 0.88802 1.19617 1.01807 1.03210 1.20815 0.89909 1.26191 0.96181 0.99054 0.95824 1.70341 1.02793 1.31914 1.21862 0.86478 0.79146 0.82254 0.80204 1.18612 1.20107 1.20068 1.68664 1.28970 1.11450 1.10058 1.22280 0.84960 1.00726 0.92092 0.91409 0.91609 0.87523 0.87977 0.87213 0.90997 0.90575 0.77081 0.89129 0.88569 0.88543 0.91669 0.89824 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.34 -3.74 10.56 -39.26 -0.41 -4.15 16 3 C 0.46 5.35 7.05 36.00 0.25 5.60 16 4 O -0.48 -6.03 15.45 -18.75 -0.29 -6.32 16 5 C 0.12 1.35 1.58 -89.62 -0.14 1.20 16 6 F -0.17 -2.23 17.01 2.25 0.04 -2.19 16 7 C -0.13 -1.23 5.91 -24.90 -0.15 -1.38 16 8 C 0.10 1.06 6.16 -3.07 -0.02 1.04 16 9 N -0.64 -9.99 3.33 -176.24 -0.59 -10.58 16 10 C 0.69 14.34 8.45 -86.92 -0.73 13.61 16 11 O -0.45 -11.62 12.36 5.30 0.07 -11.56 16 12 N -0.67 -13.41 5.34 -15.78 -0.08 -13.50 16 13 C 0.39 9.48 7.43 -154.99 -1.15 8.33 16 14 C -0.36 -8.00 9.96 -38.89 -0.39 -8.39 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.31 -7.71 9.83 -38.66 -0.38 -8.09 16 17 C 0.27 7.66 6.55 -85.00 -0.56 7.11 16 18 C -0.42 -11.73 9.14 -37.73 -0.34 -12.07 16 19 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16 20 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 21 N -0.65 -18.21 8.99 55.55 0.50 -17.71 16 22 Si 0.89 19.38 29.56 -169.99 -5.02 14.35 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 N -0.47 -13.40 5.74 -10.26 -0.06 -13.46 16 27 C 0.12 1.72 6.18 -2.53 -0.02 1.70 16 28 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.11 0.96 7.36 -51.92 -0.38 0.57 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.40 6.19 7.68 -40.82 -0.31 5.88 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 39 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 40 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 41 H 0.11 1.62 8.04 -51.93 -0.42 1.21 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -34.84 354.32 -8.45 -43.29 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.88 Total: 6.31 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -3.05 Total: 10.17 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.23 Total: -55.25 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.64 Total: -22.03 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.84 -8.45 -43.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.456 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds