Wall clock time and date at job start Tue Mar 31 2020 19:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00018 * 2 1 4 4 O 1.20827 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00382 * 180.02562 * 3 2 1 6 6 F 1.39899 * 110.88878 * 54.29734 * 5 3 2 7 7 C 1.55154 * 111.00825 * 178.18255 * 5 3 2 8 8 C 1.54320 * 102.94339 * 153.61208 * 7 5 3 9 9 N 1.47023 * 107.27205 * 337.80696 * 8 7 5 10 10 C 1.34774 * 125.64732 * 178.98822 * 9 8 7 11 11 O 1.21578 * 119.99853 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99958 * 359.97363 * 10 9 8 13 13 C 1.39251 * 119.99871 * 174.84861 * 12 10 9 14 14 C 1.39689 * 119.57602 * 185.39361 * 13 12 10 15 15 C 1.38642 * 119.49523 * 179.75358 * 14 13 12 16 16 C 1.38360 * 118.67100 * 0.51197 * 15 14 13 17 17 C 1.40569 * 119.12858 * 359.72707 * 16 15 14 18 18 C 1.41331 * 119.78722 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99917 * 0.02952 * 18 17 16 20 20 C 1.40031 * 120.00168 * 180.02562 * 18 17 16 21 21 N 1.30740 * 120.00064 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99811 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46973 * 120.00568 * 22 20 18 25 25 H 1.48502 * 109.47084 * 239.99787 * 22 20 18 26 26 N 1.31906 * 119.57376 * 5.66427 * 13 12 10 27 27 C 1.47422 * 108.70064 * 358.93758 * 9 8 7 28 28 H 1.09003 * 109.46880 * 299.99445 * 1 2 3 29 29 H 1.08996 * 109.48054 * 59.99626 * 1 2 3 30 30 H 1.09008 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.71717 * 271.97913 * 7 5 3 32 32 H 1.09007 * 110.72182 * 35.07281 * 7 5 3 33 33 H 1.09005 * 109.88351 * 97.22883 * 8 7 5 34 34 H 1.09008 * 109.87920 * 218.39042 * 8 7 5 35 35 H 0.96997 * 120.00381 * 354.85192 * 12 10 9 36 36 H 1.08002 * 120.24921 * 359.97438 * 14 13 12 37 37 H 1.07998 * 120.66876 * 180.24493 * 15 14 13 38 38 H 1.07994 * 120.43440 * 179.75193 * 16 15 14 39 39 H 0.97003 * 120.00050 * 180.02562 * 21 20 18 40 40 H 1.08991 * 110.36872 * 265.28708 * 27 9 8 41 41 H 1.09005 * 110.36162 * 142.96759 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 9 4.1039 0.5396 -1.0623 7 6 4.0458 2.7498 -0.0464 8 6 5.4331 2.6832 0.6262 9 7 5.4571 1.4714 1.4583 10 6 6.5020 1.0449 2.1950 11 8 6.4088 0.0238 2.8482 12 7 7.6503 1.7505 2.2075 13 6 8.6918 1.3705 3.0501 14 6 9.8330 2.1711 3.1401 15 6 10.8667 1.7938 3.9834 16 6 10.7389 0.6214 4.7069 17 6 9.5677 -0.1436 4.5689 18 6 9.4227 -1.3438 5.3010 19 1 10.2102 -1.6703 5.9641 20 6 8.2581 -2.1096 5.1666 21 7 7.3050 -1.7146 4.3635 22 14 8.0663 -3.6956 6.1347 23 1 9.2767 -3.9177 6.9658 24 1 6.8737 -3.5975 7.0141 25 1 7.8955 -4.8321 5.1942 26 7 8.5903 0.2564 3.7489 27 6 4.1484 0.8006 1.3544 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.1328 3.0951 -1.0766 32 1 3.3707 3.3926 0.5186 33 1 6.2117 2.6260 -0.1346 34 1 5.5854 3.5642 1.2498 35 1 7.7512 2.5230 1.6297 36 1 9.9078 3.0789 2.5598 37 1 11.7559 2.4006 4.0705 38 1 11.5285 0.2984 5.3692 39 1 6.4981 -2.2448 4.2707 40 1 3.4990 1.1068 2.1744 41 1 4.2760 -0.2819 1.3543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:55 Heat of formation + Delta-G solvation = -99.476338 kcal Electronic energy + Delta-G solvation = -29429.065262 eV Core-core repulsion = 25031.693032 eV Total energy + Delta-G solvation = -4397.372230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.127 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.18956 -41.82398 -41.23635 -39.78099 -38.27268 -37.55911 -35.93073 -34.86769 -32.75197 -32.15720 -30.80890 -30.57710 -28.64659 -27.46304 -25.74346 -23.95162 -23.48066 -22.96597 -21.60132 -20.81249 -19.85916 -19.44773 -18.85179 -18.23469 -18.04937 -17.67194 -16.77829 -16.59087 -16.33583 -16.24727 -16.22895 -15.78779 -15.60697 -15.51413 -15.00032 -14.64974 -14.30981 -14.22743 -14.07766 -14.00075 -13.68359 -13.63800 -13.11636 -12.90610 -12.90408 -12.70695 -12.54591 -12.51812 -12.29743 -12.26112 -11.95392 -11.72860 -11.71813 -11.54188 -10.93851 -10.87686 -9.88651 -9.63522 -9.12314 -8.79131 -8.01539 -6.39425 0.62226 0.96659 1.14644 1.29395 1.40555 1.52888 1.55243 1.64553 2.27879 2.45566 2.66695 2.91211 3.02340 3.04212 3.24799 3.56850 3.83797 4.07144 4.08659 4.20064 4.28887 4.33408 4.44230 4.47688 4.62067 4.64859 4.67777 4.75265 4.85232 4.92646 4.98848 5.04581 5.06946 5.23917 5.28579 5.67689 5.84206 5.93480 5.99596 6.25739 6.29235 6.40980 6.83138 7.03252 7.11348 7.89062 8.38108 8.59585 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.003484 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.998431 B = 8034.276927 C = 9855.207144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.493 6.493 5 C 0.119 3.881 6 F -0.179 7.179 7 C -0.120 4.120 8 C 0.091 3.909 9 N -0.642 5.642 10 C 0.681 3.319 11 O -0.509 6.509 12 N -0.655 5.655 13 C 0.364 3.636 14 C -0.342 4.342 15 C -0.033 4.033 16 C -0.329 4.329 17 C 0.237 3.763 18 C -0.465 4.465 19 H 0.086 0.914 20 C 0.011 3.989 21 N -0.688 5.688 22 Si 0.973 3.027 23 H -0.253 1.253 24 H -0.271 1.271 25 H -0.272 1.272 26 N -0.509 5.509 27 C 0.121 3.879 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.417 0.583 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.269 0.731 40 H 0.092 0.908 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 8.516 -11.206 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.380 6.380 5 C 0.098 3.902 6 F -0.159 7.159 7 C -0.157 4.157 8 C -0.031 4.031 9 N -0.385 5.385 10 C 0.381 3.619 11 O -0.376 6.376 12 N -0.305 5.305 13 C 0.124 3.876 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.352 4.352 17 C 0.112 3.888 18 C -0.496 4.496 19 H 0.104 0.896 20 C -0.215 4.215 21 N -0.307 5.307 22 Si 0.794 3.206 23 H -0.177 1.177 24 H -0.197 1.197 25 H -0.197 1.197 26 N -0.228 5.228 27 C -0.004 4.004 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.255 0.745 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.878 7.403 -10.842 19.104 hybrid contribution 0.530 -0.015 0.101 0.540 sum -13.348 7.389 -10.741 18.658 Atomic orbital electron populations 1.23726 0.73466 1.06239 1.03348 1.86578 1.26122 1.31964 1.82631 1.23314 0.90761 0.82276 0.72781 1.90692 1.66273 1.36429 1.44626 1.21843 0.85947 0.95870 0.86516 1.92963 1.86637 1.78962 1.57342 1.23249 0.96116 0.90450 1.05928 1.22345 0.98180 0.87910 0.94616 1.47553 1.12024 1.28030 1.50873 1.16104 0.80282 0.84127 0.81378 1.91396 1.80424 1.22921 1.42815 1.42308 1.12343 1.32689 1.43197 1.18820 0.86502 0.91753 0.90481 1.20903 0.97015 1.05471 1.13409 1.21035 0.97337 0.94451 0.92886 1.21810 1.01220 1.01263 1.10901 1.18875 0.87424 0.93080 0.89468 1.19923 1.02935 1.04453 1.22298 0.89615 1.27037 0.95417 1.02375 0.96642 1.70553 1.03147 1.33307 1.23662 0.85301 0.79244 0.77465 0.78569 1.17654 1.19651 1.19669 1.68626 1.29772 1.13409 1.11025 1.22322 0.84569 0.99383 0.94143 0.91049 0.90856 0.85129 0.85416 0.86095 0.89522 0.88399 0.74524 0.84862 0.84323 0.87716 0.92071 0.88997 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -7.52 10.56 -51.41 -0.54 -8.06 16 3 C 0.47 10.24 7.05 71.24 0.50 10.75 16 4 O -0.49 -11.38 15.45 21.96 0.34 -11.04 16 5 C 0.12 2.63 1.58 -10.15 -0.02 2.61 16 6 F -0.18 -4.57 17.01 44.97 0.76 -3.81 16 7 C -0.12 -1.88 5.91 31.78 0.19 -1.69 16 8 C 0.09 1.72 6.16 86.73 0.53 2.26 16 9 N -0.64 -19.57 3.33 -829.77 -2.76 -22.33 16 10 C 0.68 28.84 8.45 179.06 1.51 30.35 16 11 O -0.51 -27.47 12.36 -3.96 -0.05 -27.52 16 12 N -0.65 -25.84 5.34 -322.11 -1.72 -27.55 16 13 C 0.36 17.81 7.43 133.26 0.99 18.80 16 14 C -0.34 -14.52 9.96 22.72 0.23 -14.29 16 15 C -0.03 -1.42 10.15 22.40 0.23 -1.20 16 16 C -0.33 -16.69 9.83 22.87 0.22 -16.47 16 17 C 0.24 13.87 6.55 40.19 0.26 14.13 16 18 C -0.47 -26.87 9.14 23.47 0.21 -26.66 16 19 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 20 C 0.01 0.60 5.50 85.29 0.47 1.07 16 21 N -0.69 -40.56 8.99 21.84 0.20 -40.36 16 22 Si 0.97 41.45 29.56 68.60 2.03 43.48 16 23 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 N -0.51 -29.77 5.74 -186.36 -1.07 -30.84 16 27 C 0.12 3.36 6.18 86.86 0.54 3.90 16 28 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 29 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.70 7.36 -2.38 -0.02 1.69 16 33 H 0.09 1.42 8.12 -2.38 -0.02 1.41 16 34 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.42 12.06 7.68 -92.71 -0.71 11.35 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.27 14.95 8.29 -92.71 -0.77 14.19 16 40 H 0.09 2.38 8.03 -2.39 -0.02 2.37 16 41 H 0.08 2.63 8.04 -2.38 -0.02 2.61 16 Total: -1.00 -80.31 354.32 4.63 -75.68 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.37 Total: 27.30 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 7.07 Total: 25.07 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -5.35 Total: -121.09 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.25 Total: -46.62 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.76 Total: -3.81 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -80.31 4.63 -75.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.799 kcal (2) G-P(sol) polarization free energy of solvation -80.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds