Wall clock time and date at job start Tue Mar 31 2020 19:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35666 * 117.00115 * 2 1 4 4 C 1.38052 * 120.21456 * 0.25302 * 3 2 1 5 5 C 1.39191 * 119.98202 * 180.27931 * 4 3 2 6 6 N 1.39215 * 119.79383 * 179.76096 * 5 4 3 7 7 C 1.37833 * 120.10323 * 64.70587 * 6 5 4 8 8 N 1.31183 * 118.89940 * 359.97438 * 7 6 5 9 9 N 1.34180 * 122.20375 * 179.69832 * 7 6 5 10 10 C 1.31689 * 121.85126 * 0.58280 * 9 7 6 11 11 O 1.35041 * 120.45929 * 179.73509 * 10 9 7 12 12 C 1.46951 * 119.07287 * 359.71748 * 10 9 7 13 13 C 1.39518 * 121.63081 * 179.97438 * 12 10 9 14 14 C 1.37799 * 119.53308 * 180.02562 * 13 12 10 15 15 C 1.38734 * 120.49346 * 0.02562 * 14 13 12 16 16 C 1.37997 * 120.63601 * 359.97438 * 15 14 13 17 17 C 1.38508 * 120.11085 * 244.98081 * 6 5 4 18 18 C 1.39680 * 120.41316 * 359.74240 * 5 4 3 19 19 C 1.36215 * 120.44004 * 359.97438 * 18 5 4 20 20 C 1.40868 * 120.00245 * 359.97438 * 19 18 5 21 21 C 1.40939 * 120.20208 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99986 * 205.46642 * 21 20 19 23 23 C 1.39880 * 119.99977 * 25.47080 * 21 20 19 24 24 N 1.30915 * 120.00249 * 17.24863 * 23 21 20 25 25 Si 1.86799 * 119.99786 * 197.24861 * 23 21 20 26 26 H 1.48503 * 109.47010 * 265.19191 * 25 23 21 27 27 H 1.48511 * 109.47315 * 25.18794 * 25 23 21 28 28 H 1.48493 * 109.47220 * 145.18887 * 25 23 21 29 29 H 1.09005 * 109.47092 * 299.99922 * 1 2 3 30 30 H 1.08995 * 109.47594 * 60.00371 * 1 2 3 31 31 H 1.09010 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00781 * 0.02562 * 4 3 2 33 33 H 0.96998 * 119.99815 * 180.02562 * 8 7 6 34 34 H 0.96703 * 114.00157 * 269.97788 * 11 10 9 35 35 H 1.08002 * 120.22852 * 0.04789 * 13 12 10 36 36 H 1.07995 * 119.74999 * 180.02562 * 14 13 12 37 37 H 1.07998 * 119.67846 * 180.02562 * 15 14 13 38 38 H 1.07995 * 120.13207 * 179.97438 * 16 15 14 39 39 H 1.08001 * 119.78054 * 179.97438 * 18 5 4 40 40 H 1.07996 * 120.00155 * 179.97438 * 19 18 5 41 41 H 0.96996 * 120.00282 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3694 0.0053 5 6 1.9343 3.6070 -0.0006 6 7 1.1766 4.7749 -0.0003 7 6 0.3777 5.0803 1.0805 8 7 0.3463 4.2544 2.0992 9 7 -0.3650 6.1969 1.1279 10 6 -0.3820 7.0629 0.1359 11 8 -1.1441 8.1751 0.2112 12 6 0.4403 6.8021 -1.0538 13 6 0.4623 7.6830 -2.1355 14 6 1.2489 7.3955 -3.2298 15 6 2.0153 6.2395 -3.2616 16 6 2.0039 5.3587 -2.1993 17 6 1.2189 5.6309 -1.0884 18 6 3.3290 3.6845 -0.0065 19 6 4.0832 2.5502 -0.0059 20 6 3.4574 1.2882 0.0011 21 6 4.2336 0.1119 0.0022 22 1 3.8247 -0.8054 -0.3951 23 6 5.5337 0.1323 0.5179 24 7 5.9151 1.1161 1.2930 25 14 6.7258 -1.2440 0.1007 26 1 6.6920 -2.2703 1.1734 27 1 6.3334 -1.8644 -1.1903 28 1 8.0995 -0.6916 -0.0129 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2187 2.3171 0.0098 33 1 -0.2107 4.4535 2.8679 34 1 -2.0393 8.0628 -0.1367 35 1 -0.1328 8.5841 -2.1151 36 1 1.2688 8.0751 -4.0688 37 1 2.6273 6.0273 -4.1257 38 1 2.6033 4.4610 -2.2329 39 1 3.8125 4.6502 -0.0114 40 1 5.1610 2.6184 -0.0109 41 1 6.8167 1.1305 1.6503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162896253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:45 Heat of formation + Delta-G solvation = 43.863955 kcal Electronic energy + Delta-G solvation = -28619.878280 eV Core-core repulsion = 24659.490977 eV Total energy + Delta-G solvation = -3960.387304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.16666 -38.87050 -38.13016 -37.68141 -36.17978 -34.62015 -33.06785 -32.64993 -30.85763 -29.79307 -29.00400 -28.56280 -26.54850 -25.27696 -24.25241 -22.92808 -22.44522 -20.89239 -20.66157 -19.10022 -18.65227 -17.86349 -17.57222 -17.19840 -15.97290 -15.73768 -15.49933 -15.27172 -14.65016 -14.59074 -14.33123 -14.24919 -14.13676 -13.90846 -13.85556 -12.90100 -12.55079 -12.47778 -12.31096 -12.19452 -11.92169 -11.55894 -11.33365 -11.30862 -11.20959 -11.11379 -10.62764 -10.49757 -10.08696 -9.96695 -9.84041 -9.67701 -9.62257 -9.27339 -9.20827 -8.73163 -7.68478 -7.22873 -7.05251 -6.80646 -4.34095 0.39332 1.28658 1.70168 2.51458 2.93887 2.97640 3.04398 3.05472 3.11860 3.21258 3.36642 3.87858 4.04001 4.37363 4.47060 4.51493 4.62354 4.91978 5.06543 5.32230 5.41872 5.48995 5.51996 5.72634 5.78148 5.84807 5.98193 6.01899 6.12742 6.14970 6.23360 6.26973 6.46388 6.61871 6.68102 6.86497 6.96833 7.03462 7.15539 7.24719 7.33755 7.62626 7.76241 7.84830 8.02845 8.12061 8.30389 8.57578 8.70842 8.82293 8.97276 10.06959 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.003608 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.113600 B = 7758.082982 C = 8461.895335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.014 3.986 4 C -0.126 4.126 5 C 0.006 3.994 6 N -0.446 5.446 7 C 0.545 3.455 8 N -0.710 5.710 9 N -0.559 5.559 10 C 0.447 3.553 11 O -0.474 6.474 12 C -0.216 4.216 13 C -0.033 4.033 14 C -0.176 4.176 15 C -0.048 4.048 16 C -0.161 4.161 17 C 0.240 3.760 18 C -0.102 4.102 19 C -0.146 4.146 20 C 0.110 3.890 21 C -0.432 4.432 22 H 0.086 0.914 23 C 0.072 3.928 24 N -0.783 5.783 25 Si 0.912 3.088 26 H -0.269 1.269 27 H -0.259 1.259 28 H -0.275 1.275 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.345 0.655 34 H 0.411 0.589 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 10.046 -8.957 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C -0.030 4.030 4 C -0.147 4.147 5 C -0.085 4.085 6 N -0.144 5.144 7 C 0.176 3.824 8 N -0.343 5.343 9 N -0.288 5.288 10 C 0.227 3.773 11 O -0.282 6.282 12 C -0.225 4.225 13 C -0.054 4.054 14 C -0.196 4.196 15 C -0.068 4.068 16 C -0.182 4.182 17 C 0.132 3.868 18 C -0.122 4.122 19 C -0.166 4.166 20 C 0.107 3.893 21 C -0.460 4.460 22 H 0.105 0.895 23 C -0.147 4.147 24 N -0.408 5.408 25 Si 0.736 3.264 26 H -0.194 1.194 27 H -0.182 1.182 28 H -0.200 1.200 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.272 0.728 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.166 0.834 39 H 0.108 0.892 40 H 0.147 0.853 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.691 9.008 -7.336 13.933 hybrid contribution -0.440 0.304 -0.340 0.633 sum -8.131 9.312 -7.676 14.551 Atomic orbital electron populations 1.22729 0.81624 1.01725 0.99991 1.85964 1.18280 1.27787 1.90390 1.18868 0.92042 0.82412 1.09726 1.20308 0.97339 0.91223 1.05804 1.16390 0.88887 0.82145 1.21109 1.41414 1.40185 1.20331 1.12441 1.19522 0.87660 0.86452 0.88732 1.70180 1.29536 1.30829 1.03776 1.69160 1.25804 1.04233 1.29566 1.21163 0.86808 0.82662 0.86664 1.84502 1.28818 1.29300 1.85599 1.19269 1.06998 0.98561 0.97673 1.20935 0.96382 0.96911 0.91171 1.20977 1.00438 0.98917 0.99249 1.21241 0.95798 0.92624 0.97158 1.20954 1.02171 1.02679 0.92412 1.18147 0.92854 0.88124 0.87629 1.20299 0.91287 0.97799 1.02854 1.20623 0.99515 0.90048 1.06429 1.17117 0.87312 0.94064 0.90811 1.19514 0.96591 0.96846 1.33041 0.89548 1.25988 0.98936 0.97093 0.92686 1.69863 1.19424 1.30301 1.21191 0.86229 0.79002 0.80911 0.80274 1.19448 1.18221 1.19968 0.93936 0.94481 0.89954 0.88528 0.83785 0.72829 0.84777 0.85530 0.85090 0.83433 0.89158 0.85336 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.31 -7.19 9.78 -18.70 -0.18 -7.38 16 3 C 0.01 0.36 6.71 -38.42 -0.26 0.10 16 4 C -0.13 -2.92 8.14 -39.30 -0.32 -3.24 16 5 C 0.01 0.13 4.03 -83.62 -0.34 -0.21 16 6 N -0.45 -9.01 2.78 -59.62 -0.17 -9.18 16 7 C 0.54 11.14 8.27 -323.09 -2.67 8.47 16 8 N -0.71 -15.42 12.72 29.72 0.38 -15.04 16 9 N -0.56 -9.93 10.38 -12.29 -0.13 -10.06 16 10 C 0.45 6.42 8.02 -14.09 -0.11 6.31 16 11 O -0.47 -4.87 12.99 -16.83 -0.22 -5.09 16 12 C -0.22 -3.06 5.88 -104.97 -0.62 -3.68 16 13 C -0.03 -0.35 9.68 -39.27 -0.38 -0.73 16 14 C -0.18 -1.73 10.02 -39.56 -0.40 -2.13 16 15 C -0.05 -0.55 10.02 -39.49 -0.40 -0.94 16 16 C -0.16 -2.43 9.01 -39.49 -0.36 -2.79 16 17 C 0.24 4.08 6.43 -83.75 -0.54 3.54 16 18 C -0.10 -2.35 8.17 -39.77 -0.32 -2.68 16 19 C -0.15 -3.63 8.62 -39.31 -0.34 -3.97 16 20 C 0.11 2.87 5.58 -106.65 -0.59 2.28 16 21 C -0.43 -11.22 8.70 -37.95 -0.33 -11.55 16 22 H 0.09 2.22 7.65 -52.49 -0.40 1.82 16 23 C 0.07 1.75 5.14 -17.33 -0.09 1.66 16 24 N -0.78 -19.68 10.98 55.55 0.61 -19.07 16 25 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 28 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 29 H 0.04 0.76 7.65 -51.93 -0.40 0.36 16 30 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 31 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.10 2.15 6.29 -52.49 -0.33 1.82 16 33 H 0.35 6.79 8.88 -40.82 -0.36 6.43 16 34 H 0.41 1.87 9.06 45.56 0.41 2.28 16 35 H 0.13 1.02 7.75 -52.49 -0.41 0.61 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.15 2.45 6.27 -52.49 -0.33 2.12 16 39 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.13 3.25 6.19 -52.49 -0.33 2.93 16 41 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -31.81 350.81 -9.88 -41.69 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -3.36 Total: 13.63 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -7.07 Total: -7.93 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.69 Total: -53.35 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.40 Total: -12.46 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.81 -9.88 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162896253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.554 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds