Wall clock time and date at job start Tue Mar 31 2020 19:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35666 * 117.00115 * 2 1 4 4 C 1.38052 * 120.21456 * 0.25302 * 3 2 1 5 5 C 1.39191 * 119.98202 * 180.27931 * 4 3 2 6 6 N 1.39215 * 119.79383 * 179.76096 * 5 4 3 7 7 C 1.37833 * 120.10323 * 64.70587 * 6 5 4 8 8 N 1.31183 * 118.89940 * 359.97438 * 7 6 5 9 9 N 1.34180 * 122.20375 * 179.69832 * 7 6 5 10 10 C 1.31689 * 121.85126 * 0.58280 * 9 7 6 11 11 O 1.35041 * 120.45929 * 179.73509 * 10 9 7 12 12 C 1.46951 * 119.07287 * 359.71748 * 10 9 7 13 13 C 1.39518 * 121.63081 * 179.97438 * 12 10 9 14 14 C 1.37799 * 119.53308 * 180.02562 * 13 12 10 15 15 C 1.38734 * 120.49346 * 0.02562 * 14 13 12 16 16 C 1.37997 * 120.63601 * 359.97438 * 15 14 13 17 17 C 1.38508 * 120.11085 * 244.98081 * 6 5 4 18 18 C 1.39680 * 120.41316 * 359.74240 * 5 4 3 19 19 C 1.36215 * 120.44004 * 359.97438 * 18 5 4 20 20 C 1.40868 * 120.00245 * 359.97438 * 19 18 5 21 21 C 1.40939 * 120.20208 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99986 * 205.46642 * 21 20 19 23 23 C 1.39880 * 119.99977 * 25.47080 * 21 20 19 24 24 N 1.30915 * 120.00249 * 17.24863 * 23 21 20 25 25 Si 1.86799 * 119.99786 * 197.24861 * 23 21 20 26 26 H 1.48503 * 109.47010 * 265.19191 * 25 23 21 27 27 H 1.48511 * 109.47315 * 25.18794 * 25 23 21 28 28 H 1.48493 * 109.47220 * 145.18887 * 25 23 21 29 29 H 1.09005 * 109.47092 * 299.99922 * 1 2 3 30 30 H 1.08995 * 109.47594 * 60.00371 * 1 2 3 31 31 H 1.09010 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00781 * 0.02562 * 4 3 2 33 33 H 0.96998 * 119.99815 * 180.02562 * 8 7 6 34 34 H 0.96703 * 114.00157 * 269.97788 * 11 10 9 35 35 H 1.08002 * 120.22852 * 0.04789 * 13 12 10 36 36 H 1.07995 * 119.74999 * 180.02562 * 14 13 12 37 37 H 1.07998 * 119.67846 * 180.02562 * 15 14 13 38 38 H 1.07995 * 120.13207 * 179.97438 * 16 15 14 39 39 H 1.08001 * 119.78054 * 179.97438 * 18 5 4 40 40 H 1.07996 * 120.00155 * 179.97438 * 19 18 5 41 41 H 0.96996 * 120.00282 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3694 0.0053 5 6 1.9343 3.6070 -0.0006 6 7 1.1766 4.7749 -0.0003 7 6 0.3777 5.0803 1.0805 8 7 0.3463 4.2544 2.0992 9 7 -0.3650 6.1969 1.1279 10 6 -0.3820 7.0629 0.1359 11 8 -1.1441 8.1751 0.2112 12 6 0.4403 6.8021 -1.0538 13 6 0.4623 7.6830 -2.1355 14 6 1.2489 7.3955 -3.2298 15 6 2.0153 6.2395 -3.2616 16 6 2.0039 5.3587 -2.1993 17 6 1.2189 5.6309 -1.0884 18 6 3.3290 3.6845 -0.0065 19 6 4.0832 2.5502 -0.0059 20 6 3.4574 1.2882 0.0011 21 6 4.2336 0.1119 0.0022 22 1 3.8247 -0.8054 -0.3951 23 6 5.5337 0.1323 0.5179 24 7 5.9151 1.1161 1.2930 25 14 6.7258 -1.2440 0.1007 26 1 6.6920 -2.2703 1.1734 27 1 6.3334 -1.8644 -1.1903 28 1 8.0995 -0.6916 -0.0129 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2187 2.3171 0.0098 33 1 -0.2107 4.4535 2.8679 34 1 -2.0393 8.0628 -0.1367 35 1 -0.1328 8.5841 -2.1151 36 1 1.2688 8.0751 -4.0688 37 1 2.6273 6.0273 -4.1257 38 1 2.6033 4.4610 -2.2329 39 1 3.8125 4.6502 -0.0114 40 1 5.1610 2.6184 -0.0109 41 1 6.8167 1.1305 1.6503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162896253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:44 Heat of formation + Delta-G solvation = 22.723450 kcal Electronic energy + Delta-G solvation = -28620.795001 eV Core-core repulsion = 24659.490977 eV Total energy + Delta-G solvation = -3961.304025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.45493 -40.51565 -39.28730 -38.87333 -37.83195 -36.18726 -34.67575 -33.96939 -31.93257 -31.43401 -30.77963 -29.96325 -28.14038 -26.96608 -25.39453 -24.28466 -23.72397 -22.62388 -22.25116 -20.29644 -19.88871 -19.40482 -19.09302 -18.54922 -17.45345 -17.20647 -16.86671 -16.67339 -16.30478 -16.23929 -15.81874 -15.57771 -15.34024 -15.15103 -14.98219 -14.61490 -14.22778 -13.78689 -13.63114 -13.33048 -13.27575 -13.04933 -12.97464 -12.79641 -12.76822 -12.28250 -12.15420 -12.05986 -11.74881 -11.62645 -11.54868 -11.12281 -10.93317 -10.80315 -10.72912 -9.83541 -9.45820 -9.00343 -8.69124 -8.52240 -6.25807 -0.70652 0.20750 0.57454 0.77683 1.03783 1.40033 1.46190 1.55907 1.58321 2.08029 2.22198 2.22984 2.61576 2.82611 2.89349 3.25244 3.50727 3.59890 3.97073 4.18926 4.20535 4.29735 4.35940 4.37649 4.39975 4.41499 4.51534 4.58348 4.65365 4.84525 4.98067 5.04804 5.10534 5.20990 5.26057 5.33385 5.46345 5.52197 5.60541 5.77041 5.89294 6.01702 6.07838 6.27263 6.43531 6.50490 6.66825 6.70100 6.83160 7.13412 7.39570 8.29595 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.003608 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.113600 B = 7758.082982 C = 8461.895335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.332 6.332 3 C 0.004 3.996 4 C -0.132 4.132 5 C 0.032 3.968 6 N -0.464 5.464 7 C 0.549 3.451 8 N -0.762 5.762 9 N -0.592 5.592 10 C 0.473 3.527 11 O -0.463 6.463 12 C -0.224 4.224 13 C -0.016 4.016 14 C -0.156 4.156 15 C -0.034 4.034 16 C -0.186 4.186 17 C 0.202 3.798 18 C -0.107 4.107 19 C -0.155 4.155 20 C 0.077 3.923 21 C -0.469 4.469 22 H 0.077 0.923 23 C 0.035 3.965 24 N -0.819 5.819 25 Si 0.985 3.015 26 H -0.266 1.266 27 H -0.256 1.256 28 H -0.262 1.262 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.347 0.653 34 H 0.440 0.560 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 12.946 -11.698 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.247 6.247 3 C -0.041 4.041 4 C -0.153 4.153 5 C -0.060 4.060 6 N -0.164 5.164 7 C 0.181 3.819 8 N -0.398 5.398 9 N -0.323 5.323 10 C 0.255 3.745 11 O -0.276 6.276 12 C -0.233 4.233 13 C -0.036 4.036 14 C -0.175 4.175 15 C -0.054 4.054 16 C -0.208 4.208 17 C 0.098 3.902 18 C -0.127 4.127 19 C -0.175 4.175 20 C 0.074 3.926 21 C -0.497 4.497 22 H 0.095 0.905 23 C -0.181 4.181 24 N -0.445 5.445 25 Si 0.805 3.195 26 H -0.191 1.191 27 H -0.180 1.180 28 H -0.186 1.186 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.306 0.694 35 H 0.195 0.805 36 H 0.191 0.809 37 H 0.178 0.822 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.846 11.991 -10.155 18.032 hybrid contribution -0.349 -0.213 0.283 0.497 sum -9.194 11.777 -9.872 17.908 Atomic orbital electron populations 1.23012 0.78944 1.04191 1.00226 1.85910 1.21085 1.27365 1.90324 1.19038 0.92113 0.83389 1.09542 1.20406 0.97521 0.91274 1.06050 1.16411 0.88891 0.83218 1.17494 1.41445 1.40705 1.20353 1.13906 1.19624 0.87034 0.87036 0.88213 1.70152 1.31929 1.32749 1.05009 1.69164 1.27062 1.04796 1.31316 1.21331 0.85710 0.81982 0.85473 1.84469 1.30489 1.26783 1.85835 1.19513 1.06655 0.98263 0.98841 1.21478 0.95728 0.96911 0.89493 1.21540 0.97901 0.98137 0.99967 1.21660 0.95306 0.92011 0.96405 1.20933 1.02855 1.03252 0.93742 1.18536 0.95103 0.89109 0.87456 1.20350 0.91803 0.97544 1.03020 1.20559 0.99150 0.90526 1.07247 1.17438 0.88346 0.94683 0.92123 1.19614 0.98224 0.96597 1.35292 0.90511 1.26794 0.99894 0.99593 0.91773 1.69907 1.20242 1.32242 1.22108 0.85149 0.76872 0.77591 0.79862 1.19097 1.17993 1.18565 0.94454 0.93345 0.86395 0.87989 0.83585 0.69385 0.80528 0.80908 0.82180 0.86147 0.88341 0.86435 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.81 113.37 1.11 2.25 16 2 O -0.33 -16.13 9.78 -89.82 -0.88 -17.01 16 3 C 0.00 0.22 6.71 23.02 0.15 0.38 16 4 C -0.13 -6.43 8.14 22.45 0.18 -6.25 16 5 C 0.03 1.49 4.03 38.55 0.16 1.65 16 6 N -0.46 -19.28 2.78 -342.54 -0.95 -20.24 16 7 C 0.55 23.12 8.27 261.59 2.16 25.28 16 8 N -0.76 -34.87 12.72 -59.89 -0.76 -35.63 16 9 N -0.59 -20.86 10.38 -306.30 -3.18 -24.04 16 10 C 0.47 12.40 8.02 87.00 0.70 13.10 16 11 O -0.46 -7.53 12.99 -83.14 -1.08 -8.61 16 12 C -0.22 -5.71 5.88 -20.09 -0.12 -5.82 16 13 C -0.02 -0.25 9.68 22.47 0.22 -0.03 16 14 C -0.16 -2.12 10.02 22.28 0.22 -1.89 16 15 C -0.03 -0.65 10.02 22.33 0.22 -0.43 16 16 C -0.19 -5.51 9.01 22.33 0.20 -5.30 16 17 C 0.20 6.75 6.43 38.80 0.25 7.00 16 18 C -0.11 -5.22 8.17 22.15 0.18 -5.04 16 19 C -0.15 -8.22 8.62 22.44 0.19 -8.03 16 20 C 0.08 4.29 5.58 -21.18 -0.12 4.17 16 21 C -0.47 -25.87 8.70 23.33 0.20 -25.67 16 22 H 0.08 4.21 7.65 -2.91 -0.02 4.19 16 23 C 0.03 1.77 5.14 85.23 0.44 2.21 16 24 N -0.82 -43.17 10.98 21.82 0.24 -42.93 16 25 Si 0.99 38.38 29.59 68.60 2.03 40.41 16 26 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 28 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 29 H 0.04 1.38 7.65 -2.38 -0.02 1.36 16 30 H 0.05 1.62 7.67 -2.39 -0.02 1.60 16 31 H 0.12 3.36 8.14 -2.38 -0.02 3.34 16 32 H 0.10 4.76 6.29 -2.91 -0.02 4.74 16 33 H 0.35 14.55 8.88 -92.71 -0.82 13.73 16 34 H 0.44 1.83 9.06 -74.06 -0.67 1.16 16 35 H 0.18 1.30 7.75 -2.91 -0.02 1.27 16 36 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.12 4.19 6.27 -2.91 -0.02 4.17 16 39 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 40 H 0.12 6.39 6.19 -2.91 -0.02 6.37 16 41 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 Total: -1.00 -76.78 350.81 1.41 -75.37 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.37 Total: 35.12 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 6.36 Total: -2.43 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -4.65 Total: -122.84 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.96 Total: -25.62 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -76.78 1.41 -75.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162896253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.090 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds