Wall clock time and date at job start Tue Mar 31 2020 19:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35927 * 117.00231 * 2 1 4 4 C 1.39431 * 119.82458 * 0.02562 * 3 2 1 5 5 C 1.38078 * 120.56813 * 179.97438 * 4 3 2 6 6 C 1.38702 * 120.20739 * 359.97438 * 5 4 3 7 7 N 1.39090 * 120.17360 * 180.02562 * 6 5 4 8 8 C 1.37816 * 120.10464 * 269.72473 * 7 6 5 9 9 N 1.31191 * 118.89538 * 359.97438 * 8 7 6 10 10 N 1.34181 * 122.20831 * 179.69502 * 8 7 6 11 11 C 1.31687 * 121.84669 * 0.59596 * 10 8 7 12 12 O 1.35048 * 120.46286 * 179.72934 * 11 10 8 13 13 C 1.46939 * 119.06972 * 359.70171 * 11 10 8 14 14 C 1.39514 * 121.63426 * 179.97438 * 13 11 10 15 15 C 1.37805 * 119.53592 * 180.02562 * 14 13 11 16 16 C 1.38742 * 120.49336 * 0.02562 * 15 14 13 17 17 C 1.37991 * 120.63624 * 0.02562 * 16 15 14 18 18 C 1.38475 * 120.10217 * 90.00172 * 7 6 5 19 19 C 1.41507 * 119.64726 * 0.02562 * 6 5 4 20 20 C 1.41016 * 120.27758 * 179.97438 * 19 6 5 21 21 H 1.08001 * 119.99669 * 334.37210 * 20 19 6 22 22 C 1.39918 * 120.00343 * 154.37397 * 20 19 6 23 23 N 1.30869 * 119.99951 * 343.28265 * 22 20 19 24 24 Si 1.86804 * 120.00084 * 163.28830 * 22 20 19 25 25 H 1.48497 * 109.47171 * 89.99702 * 24 22 20 26 26 H 1.48493 * 109.46869 * 210.00168 * 24 22 20 27 27 H 1.48499 * 109.46992 * 329.99642 * 24 22 20 28 28 C 1.37858 * 119.83062 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46882 * 299.99796 * 1 2 3 30 30 H 1.09001 * 109.47541 * 59.99882 * 1 2 3 31 31 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.71604 * 0.25746 * 4 3 2 33 33 H 1.07995 * 119.89447 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99683 * 179.97438 * 9 8 7 35 35 H 0.96696 * 114.00196 * 269.97068 * 12 11 10 36 36 H 1.07996 * 120.23391 * 0.05242 * 14 13 11 37 37 H 1.07993 * 119.75246 * 179.97438 * 15 14 13 38 38 H 1.07994 * 119.67904 * 179.97438 * 16 15 14 39 39 H 1.08007 * 120.13237 * 179.97438 * 17 16 15 40 40 H 0.97000 * 120.00282 * 179.97438 * 23 22 20 41 41 H 1.08006 * 120.10571 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2832 2.3782 0.0005 5 6 1.8941 3.6164 0.0011 6 6 3.2779 3.7120 0.0016 7 7 3.8925 4.9597 0.0027 8 6 4.2035 5.5781 -1.1890 9 7 3.9106 4.9701 -2.3140 10 7 4.7909 6.7836 -1.2372 11 6 5.1156 7.4425 -0.1443 12 8 5.7109 8.6520 -0.2255 13 6 4.8205 6.8437 1.1646 14 6 5.1417 7.4944 2.3562 15 6 4.8458 6.8926 3.5600 16 6 4.2332 5.6482 3.5933 17 6 3.9104 4.9918 2.4232 18 6 4.1990 5.5819 1.2012 19 6 4.0609 2.5333 0.0011 20 6 5.4687 2.6149 0.0011 21 1 5.9589 3.4882 -0.4031 22 6 6.2304 1.5645 0.5246 23 7 5.6684 0.6708 1.2980 24 14 8.0496 1.4378 0.1198 25 1 8.8357 2.1842 1.1348 26 1 8.4601 0.0108 0.1270 27 1 8.2992 2.0179 -1.2242 28 6 3.4231 1.2791 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2052 2.3130 0.0052 33 1 1.2926 4.5134 0.0019 34 1 4.1221 5.3910 -3.1620 35 1 6.6768 8.6142 -0.2489 36 1 5.6186 8.4632 2.3353 37 1 5.0933 7.3930 4.4845 38 1 4.0076 5.1885 4.5441 39 1 3.4341 4.0231 2.4585 40 1 6.1963 -0.0576 1.6607 41 1 4.0103 0.3726 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162897195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:50 Heat of formation + Delta-G solvation = 40.483011 kcal Electronic energy + Delta-G solvation = -29209.920511 eV Core-core repulsion = 25249.386599 eV Total energy + Delta-G solvation = -3960.533912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.90999 -38.85917 -38.02883 -37.52742 -36.23605 -34.03686 -33.32858 -32.42152 -30.57260 -29.86373 -29.25298 -28.14443 -26.29312 -25.31580 -24.05433 -22.79604 -22.35686 -21.26335 -20.32441 -18.84098 -18.43875 -17.82486 -17.55529 -16.64446 -16.22646 -15.75355 -15.38164 -15.24648 -14.88662 -14.81779 -14.25807 -14.04630 -13.82517 -13.73032 -13.30874 -12.83369 -12.53047 -12.21354 -12.16666 -11.99414 -11.82649 -11.64842 -11.48305 -11.29450 -11.22026 -11.01127 -10.67493 -10.51561 -10.26303 -10.05176 -9.61164 -9.53238 -9.38758 -9.25418 -9.02519 -8.46725 -7.62156 -7.09864 -6.97452 -6.82262 -4.57199 0.64607 1.56340 1.97615 2.61372 2.76184 2.98981 3.02937 3.12447 3.26522 3.43254 3.62797 3.82099 4.25192 4.32369 4.45372 4.68328 4.85092 5.14648 5.28538 5.41539 5.55912 5.62737 5.69914 5.73319 5.76833 5.87913 5.94734 6.03424 6.23905 6.30939 6.38736 6.51900 6.66583 6.71393 6.89193 6.91512 7.07647 7.16623 7.28409 7.34962 7.41636 7.51763 7.76832 7.87619 8.01202 8.20732 8.33215 8.61353 8.68185 8.79906 9.08621 9.99320 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009471 B = 0.005393 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.552983 B = 5191.025718 C = 6152.386542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.139 3.861 4 C -0.309 4.309 5 C -0.031 4.031 6 C -0.026 4.026 7 N -0.434 5.434 8 C 0.551 3.449 9 N -0.714 5.714 10 N -0.561 5.561 11 C 0.447 3.553 12 O -0.477 6.477 13 C -0.218 4.218 14 C -0.037 4.037 15 C -0.178 4.178 16 C -0.051 4.051 17 C -0.147 4.147 18 C 0.253 3.747 19 C 0.162 3.838 20 C -0.436 4.436 21 H 0.074 0.926 22 C 0.079 3.921 23 N -0.775 5.775 24 Si 0.904 3.096 25 H -0.268 1.268 26 H -0.272 1.272 27 H -0.260 1.260 28 C -0.186 4.186 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.342 0.658 35 H 0.411 0.589 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.285 0.715 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 7.921 5.408 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.095 3.905 4 C -0.330 4.330 5 C -0.051 4.051 6 C -0.117 4.117 7 N -0.131 5.131 8 C 0.183 3.817 9 N -0.348 5.348 10 N -0.290 5.290 11 C 0.227 3.773 12 O -0.285 6.285 13 C -0.227 4.227 14 C -0.057 4.057 15 C -0.198 4.198 16 C -0.071 4.071 17 C -0.169 4.169 18 C 0.145 3.855 19 C 0.158 3.842 20 C -0.464 4.464 21 H 0.092 0.908 22 C -0.142 4.142 23 N -0.398 5.398 24 Si 0.728 3.272 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.184 1.184 28 C -0.207 4.207 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.271 0.729 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.096 0.904 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.133 6.804 4.220 8.086 hybrid contribution 1.374 0.583 0.164 1.502 sum 0.242 7.387 4.384 8.593 Atomic orbital electron populations 1.22777 0.80612 1.01974 1.00605 1.86022 1.19627 1.28881 1.89669 1.18947 0.92375 0.82525 0.96613 1.20239 0.97472 0.91841 1.23431 1.20242 0.92659 0.95708 0.96448 1.17091 0.90004 0.81718 1.22874 1.41003 1.53682 1.17259 1.01145 1.19511 0.90602 0.83465 0.88130 1.70127 1.30082 1.35878 0.98669 1.69125 1.20122 1.08418 1.31324 1.21158 0.86630 0.82119 0.87406 1.84474 1.25546 1.22972 1.95479 1.19244 1.12877 0.96582 0.93978 1.20873 0.95839 0.98373 0.90627 1.20913 1.04514 0.96831 0.97522 1.21182 0.94281 0.93887 0.97783 1.20811 1.04672 1.01756 0.89623 1.18113 0.90722 0.89507 0.87131 1.17172 0.92706 0.88621 0.85687 1.19323 0.90920 1.02693 1.33457 0.90755 1.25930 1.01375 0.94266 0.92590 1.69826 1.38558 1.10689 1.20766 0.86353 0.81799 0.78644 0.80395 1.19307 1.19668 1.18368 1.20418 0.89398 0.98628 1.12236 0.93587 0.93591 0.89838 0.88158 0.89129 0.84153 0.72894 0.85035 0.85821 0.85434 0.83845 0.90425 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 16 2 O -0.33 -7.02 10.49 -19.51 -0.20 -7.22 16 3 C 0.14 3.29 6.67 -39.28 -0.26 3.02 16 4 C -0.31 -6.78 9.03 -39.20 -0.35 -7.14 16 5 C -0.03 -0.70 9.94 -39.47 -0.39 -1.09 16 6 C -0.03 -0.61 2.96 -83.15 -0.25 -0.85 16 7 N -0.43 -9.60 1.98 -59.28 -0.12 -9.72 16 8 C 0.55 12.26 8.16 -323.11 -2.64 9.62 16 9 N -0.71 -16.52 13.23 29.72 0.39 -16.13 16 10 N -0.56 -11.02 10.38 -12.30 -0.13 -11.14 16 11 C 0.45 7.32 8.02 -14.09 -0.11 7.20 16 12 O -0.48 -5.75 12.99 -16.85 -0.22 -5.97 16 13 C -0.22 -3.58 5.88 -104.97 -0.62 -4.20 16 14 C -0.04 -0.47 9.68 -39.26 -0.38 -0.85 16 15 C -0.18 -2.17 10.02 -39.55 -0.40 -2.56 16 16 C -0.05 -0.72 10.02 -39.49 -0.40 -1.11 16 17 C -0.15 -2.64 9.35 -39.49 -0.37 -3.01 16 18 C 0.25 4.92 6.51 -83.75 -0.55 4.38 16 19 C 0.16 4.18 5.58 -106.67 -0.59 3.58 16 20 C -0.44 -11.26 8.67 -37.90 -0.33 -11.59 16 21 H 0.07 1.99 7.39 -52.49 -0.39 1.60 16 22 C 0.08 1.91 5.15 -17.33 -0.09 1.82 16 23 N -0.77 -19.02 10.96 55.55 0.61 -18.41 16 24 Si 0.90 18.55 29.59 -169.99 -5.03 13.52 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 28 C -0.19 -4.80 8.60 -38.79 -0.33 -5.14 16 29 H 0.05 0.67 7.64 -51.93 -0.40 0.28 16 30 H 0.05 0.68 7.65 -51.93 -0.40 0.29 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.93 6.26 -52.49 -0.33 1.60 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.34 7.19 8.88 -40.82 -0.36 6.83 16 35 H 0.41 2.75 9.06 45.56 0.41 3.16 16 36 H 0.13 1.27 7.75 -52.49 -0.41 0.86 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.14 2.85 7.13 -52.48 -0.37 2.48 16 40 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 41 H 0.13 3.51 6.20 -52.48 -0.33 3.18 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -31.14 353.55 -9.82 -40.96 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -3.39 Total: 15.12 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -7.06 Total: -6.34 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.76 Total: -55.40 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.42 Total: -13.19 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.14 -9.82 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162897195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.448 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds