Wall clock time and date at job start Tue Mar 31 2020 19:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99722 * 2 1 4 4 C 1.38664 * 119.93541 * 359.72672 * 3 2 1 5 5 C 1.38193 * 120.09366 * 179.72607 * 4 3 2 6 6 F 1.35103 * 120.01388 * 180.29548 * 5 4 3 7 7 C 1.39579 * 119.97062 * 0.54693 * 5 4 3 8 8 C 1.48283 * 120.06237 * 179.70160 * 7 5 4 9 9 N 1.30833 * 126.42018 * 180.02562 * 8 7 5 10 10 O 1.21294 * 110.07900 * 179.97438 * 9 8 7 11 11 C 1.33663 * 110.04412 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.43057 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.46570 * 269.97066 * 12 11 10 14 14 C 1.46905 * 110.99937 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47251 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00163 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00180 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47024 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46817 * 119.99986 * 19 17 15 22 22 H 1.48500 * 109.47218 * 239.99731 * 19 17 15 23 23 N 1.30967 * 107.14158 * 359.76145 * 11 10 9 24 24 C 1.39430 * 119.87639 * 359.73266 * 7 5 4 25 25 C 1.38247 * 119.89959 * 359.97438 * 24 7 5 26 26 O 1.36039 * 119.98242 * 179.97438 * 25 24 7 27 27 C 1.42899 * 117.00511 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47382 * 60.00054 * 1 2 3 29 29 H 1.09001 * 109.46938 * 300.00041 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.95146 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47217 * 29.96876 * 12 11 10 33 33 H 1.08994 * 109.47370 * 149.97373 * 12 11 10 34 34 H 1.00897 * 111.00109 * 56.04681 * 13 12 11 35 35 H 1.09001 * 109.46958 * 299.99772 * 14 13 12 36 36 H 1.09001 * 109.46807 * 59.99541 * 14 13 12 37 37 H 0.97000 * 120.00061 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.05297 * 179.97438 * 24 7 5 39 39 H 1.09007 * 109.46945 * 300.00174 * 27 26 25 40 40 H 1.09001 * 109.46728 * 59.99516 * 27 26 25 41 41 H 1.09001 * 109.47544 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2895 2.3732 -0.0057 5 6 1.9134 3.6062 0.0000 6 9 1.1746 4.7374 0.0004 7 6 3.3071 3.6825 0.0000 8 6 3.9786 5.0046 -0.0006 9 7 5.2690 5.2203 -0.0011 10 8 5.4919 6.4126 -0.0020 11 6 4.3418 7.0936 -0.0016 12 6 4.1895 8.5930 -0.0029 13 7 4.1407 9.0813 1.3817 14 6 3.9918 10.5423 1.4197 15 6 3.9449 11.0053 2.8530 16 1 4.0188 10.2863 3.6555 17 6 3.8087 12.3470 3.1399 18 7 3.7192 13.2226 2.1628 19 14 3.7514 12.9210 4.9166 20 1 3.8717 11.7485 5.8198 21 1 4.8750 13.8581 5.1705 22 1 2.4625 13.6130 5.1719 23 7 3.3720 6.2135 -0.0056 24 6 4.0667 2.5133 -0.0001 25 6 3.4371 1.2825 0.0003 26 8 4.1765 0.1406 -0.0004 27 6 5.5979 0.2881 -0.0009 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2111 2.3145 -0.0106 32 1 5.0380 9.0439 -0.5175 33 1 3.2672 8.8641 -0.5165 34 1 4.9562 8.7871 1.8978 35 1 4.8386 11.0071 0.9148 36 1 3.0678 10.8265 0.9160 37 1 3.6237 14.1666 2.3646 38 1 5.1452 2.5690 -0.0006 39 1 5.9059 0.8370 -0.8909 40 1 5.9066 0.8365 0.8891 41 1 6.0654 -0.6966 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:00 Heat of formation + Delta-G solvation = -11.286184 kcal Electronic energy + Delta-G solvation = -27919.109101 eV Core-core repulsion = 23525.561083 eV Total energy + Delta-G solvation = -4393.548018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.93266 -45.41770 -40.96360 -38.92704 -37.40082 -36.10093 -35.29993 -33.11400 -32.07380 -30.61608 -30.43161 -27.93593 -27.79327 -27.61806 -25.10136 -24.56361 -23.16906 -22.34464 -21.69074 -21.10934 -19.11432 -18.16822 -17.98604 -17.67011 -17.25464 -16.61811 -16.55302 -16.08903 -15.67584 -15.51013 -15.49833 -15.24119 -14.99169 -14.72951 -14.59798 -14.07153 -13.58517 -13.32335 -13.10544 -12.99093 -12.87543 -12.31112 -12.23780 -12.17649 -11.98331 -11.72749 -11.63307 -11.60292 -11.42653 -11.04763 -10.90568 -10.80717 -10.73720 -10.19705 -9.92043 -9.30480 -9.16745 -8.56613 -8.12280 -7.60200 -6.10693 -4.12939 0.32584 0.72604 1.35426 2.35636 2.69367 2.80417 2.90590 3.21413 3.28595 3.36161 3.37807 3.41659 3.79190 3.98200 4.27371 4.38719 4.52419 4.56120 4.72750 4.75072 4.83378 4.83997 4.93796 5.08771 5.11879 5.15879 5.17062 5.26272 5.31753 5.53367 5.56468 5.68039 5.78086 5.89631 6.03617 6.18204 6.52045 6.99516 7.03327 7.22315 7.63440 7.97726 8.11557 8.20132 8.38563 8.94860 9.52288 11.00358 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002168 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.983665 B =12910.368808 C =13548.772704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.297 6.297 3 C 0.148 3.852 4 C -0.218 4.218 5 C 0.155 3.845 6 F -0.107 7.107 7 C -0.050 4.050 8 C 0.206 3.794 9 N -0.381 5.381 10 O 0.078 5.922 11 C 0.210 3.790 12 C 0.147 3.853 13 N -0.681 5.681 14 C 0.196 3.804 15 C -0.516 4.516 16 H 0.064 0.936 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.901 3.099 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.454 5.454 24 C -0.112 4.112 25 C 0.087 3.913 26 O -0.301 6.301 27 C 0.022 3.978 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.157 0.843 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.336 0.664 35 H -0.005 1.005 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.153 0.847 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 -27.038 -7.946 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.209 6.209 3 C 0.101 3.899 4 C -0.237 4.237 5 C 0.133 3.867 6 F -0.085 7.085 7 C -0.053 4.053 8 C -0.063 4.063 9 N -0.089 5.089 10 O 0.018 5.982 11 C -0.012 4.012 12 C 0.016 3.984 13 N -0.314 5.314 14 C 0.070 3.930 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.187 5.187 24 C -0.133 4.133 25 C 0.041 3.959 26 O -0.215 6.215 27 C -0.073 4.073 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.174 0.826 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.013 0.987 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.171 0.829 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.899 -28.061 -7.928 29.221 hybrid contribution 0.703 1.436 0.689 1.741 sum -1.196 -26.625 -7.239 27.618 Atomic orbital electron populations 1.23210 0.77812 1.04550 1.01863 1.86204 1.21673 1.25033 1.88026 1.18007 0.88846 0.84917 0.98128 1.20915 1.01458 0.89740 1.11600 1.17110 0.87376 0.82543 0.99669 1.91645 1.75838 1.48160 1.92822 1.16967 0.90638 0.88224 1.09501 1.23492 0.86781 0.93669 1.02396 1.74822 1.17332 0.95158 1.21582 1.85257 1.35202 1.12190 1.65586 1.29154 0.78897 0.99508 0.93597 1.20535 1.03786 0.78681 0.95416 1.60766 1.45750 1.17404 1.07456 1.19654 0.96623 0.78633 0.98100 1.21143 1.50296 0.92189 0.91841 0.91753 1.24971 0.95155 0.96616 0.97717 1.69959 1.50089 1.02086 1.31391 0.86389 0.77596 0.78671 0.84460 1.19633 1.21032 1.20908 1.72193 1.29683 0.97389 1.19434 1.20883 1.00973 0.89049 1.02358 1.17910 0.88211 0.85955 1.03840 1.86191 1.19023 1.27157 1.89120 1.23159 0.78142 1.04250 1.01720 0.92165 0.92111 0.87694 0.82592 0.91900 0.86770 0.84745 0.98713 0.94640 0.92809 0.82903 0.92397 0.92336 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.84 10.27 -34.19 -0.35 -3.20 16 3 C 0.15 1.57 6.70 -39.04 -0.26 1.31 16 4 C -0.22 -2.23 9.00 -39.44 -0.35 -2.59 16 5 C 0.15 2.05 7.27 -39.10 -0.28 1.76 16 6 F -0.11 -1.63 15.79 2.25 0.04 -1.59 16 7 C -0.05 -0.70 5.88 -104.82 -0.62 -1.32 16 8 C 0.21 3.35 7.78 -156.09 -1.21 2.13 16 9 N -0.38 -6.05 11.86 30.98 0.37 -5.68 16 10 O 0.08 1.23 11.29 18.05 0.20 1.43 16 11 C 0.21 3.45 8.01 -12.98 -0.10 3.35 16 12 C 0.15 2.41 6.31 -4.97 -0.03 2.38 16 13 N -0.68 -13.89 6.48 -116.34 -0.75 -14.64 16 14 C 0.20 4.82 5.44 -4.97 -0.03 4.79 16 15 C -0.52 -14.17 9.32 -34.44 -0.32 -14.49 16 16 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 19 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 N -0.45 -8.03 10.24 -9.87 -0.10 -8.13 16 24 C -0.11 -1.29 8.67 -39.13 -0.34 -1.63 16 25 C 0.09 0.96 6.69 -39.19 -0.26 0.69 16 26 O -0.30 -3.10 10.28 -34.55 -0.35 -3.46 16 27 C 0.02 0.15 9.81 101.05 0.99 1.14 16 28 H 0.06 0.26 7.64 -51.93 -0.40 -0.14 16 29 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.16 1.17 6.27 -52.49 -0.33 0.85 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 34 H 0.34 6.54 8.72 -39.29 -0.34 6.20 16 35 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.15 1.57 6.09 -52.49 -0.32 1.25 16 39 H 0.06 0.34 7.66 -51.92 -0.40 -0.05 16 40 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -32.70 363.17 -6.36 -39.06 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.66 Total: -0.50 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.93 Total: 0.13 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.25 Total: -53.65 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.50 Total: -5.22 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.70 -6.36 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.774 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds