Wall clock time and date at job start Tue Mar 31 2020 19:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99722 * 2 1 4 4 C 1.38664 * 119.93541 * 359.72672 * 3 2 1 5 5 C 1.38193 * 120.09366 * 179.72607 * 4 3 2 6 6 F 1.35103 * 120.01388 * 180.29548 * 5 4 3 7 7 C 1.39579 * 119.97062 * 0.54693 * 5 4 3 8 8 C 1.48283 * 120.06237 * 179.70160 * 7 5 4 9 9 N 1.30833 * 126.42018 * 180.02562 * 8 7 5 10 10 O 1.21294 * 110.07900 * 179.97438 * 9 8 7 11 11 C 1.33663 * 110.04412 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.43057 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.46570 * 269.97066 * 12 11 10 14 14 C 1.46905 * 110.99937 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47251 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00163 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00180 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47024 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46817 * 119.99986 * 19 17 15 22 22 H 1.48500 * 109.47218 * 239.99731 * 19 17 15 23 23 N 1.30967 * 107.14158 * 359.76145 * 11 10 9 24 24 C 1.39430 * 119.87639 * 359.73266 * 7 5 4 25 25 C 1.38247 * 119.89959 * 359.97438 * 24 7 5 26 26 O 1.36039 * 119.98242 * 179.97438 * 25 24 7 27 27 C 1.42899 * 117.00511 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47382 * 60.00054 * 1 2 3 29 29 H 1.09001 * 109.46938 * 300.00041 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.95146 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47217 * 29.96876 * 12 11 10 33 33 H 1.08994 * 109.47370 * 149.97373 * 12 11 10 34 34 H 1.00897 * 111.00109 * 56.04681 * 13 12 11 35 35 H 1.09001 * 109.46958 * 299.99772 * 14 13 12 36 36 H 1.09001 * 109.46807 * 59.99541 * 14 13 12 37 37 H 0.97000 * 120.00061 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.05297 * 179.97438 * 24 7 5 39 39 H 1.09007 * 109.46945 * 300.00174 * 27 26 25 40 40 H 1.09001 * 109.46728 * 59.99516 * 27 26 25 41 41 H 1.09001 * 109.47544 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2895 2.3732 -0.0057 5 6 1.9134 3.6062 0.0000 6 9 1.1746 4.7374 0.0004 7 6 3.3071 3.6825 0.0000 8 6 3.9786 5.0046 -0.0006 9 7 5.2690 5.2203 -0.0011 10 8 5.4919 6.4126 -0.0020 11 6 4.3418 7.0936 -0.0016 12 6 4.1895 8.5930 -0.0029 13 7 4.1407 9.0813 1.3817 14 6 3.9918 10.5423 1.4197 15 6 3.9449 11.0053 2.8530 16 1 4.0188 10.2863 3.6555 17 6 3.8087 12.3470 3.1399 18 7 3.7192 13.2226 2.1628 19 14 3.7514 12.9210 4.9166 20 1 3.8717 11.7485 5.8198 21 1 4.8750 13.8581 5.1705 22 1 2.4625 13.6130 5.1719 23 7 3.3720 6.2135 -0.0056 24 6 4.0667 2.5133 -0.0001 25 6 3.4371 1.2825 0.0003 26 8 4.1765 0.1406 -0.0004 27 6 5.5979 0.2881 -0.0009 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2111 2.3145 -0.0106 32 1 5.0380 9.0439 -0.5175 33 1 3.2672 8.8641 -0.5165 34 1 4.9562 8.7871 1.8978 35 1 4.8386 11.0071 0.9148 36 1 3.0678 10.8265 0.9160 37 1 3.6237 14.1666 2.3646 38 1 5.1452 2.5690 -0.0006 39 1 5.9059 0.8370 -0.8909 40 1 5.9066 0.8365 0.8891 41 1 6.0654 -0.6966 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:59 Heat of formation + Delta-G solvation = -34.743818 kcal Electronic energy + Delta-G solvation = -27920.126300 eV Core-core repulsion = 23525.561083 eV Total energy + Delta-G solvation = -4394.565217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.99244 -46.67695 -41.75048 -39.62952 -38.30239 -37.64979 -36.57994 -34.87425 -33.61099 -31.61491 -31.22235 -29.65702 -28.47721 -28.16259 -26.82004 -25.66160 -24.26371 -23.53692 -23.25557 -22.25059 -19.96204 -19.26721 -19.16787 -18.69249 -18.53233 -18.08177 -17.35839 -17.08265 -16.97632 -16.51524 -16.43164 -16.39572 -16.25184 -15.67742 -15.58562 -15.44668 -15.16139 -14.48649 -14.29636 -13.98551 -13.82127 -13.78485 -13.35245 -13.20401 -13.14139 -13.05460 -12.68736 -12.65521 -12.56949 -12.39711 -12.19806 -12.18359 -12.12177 -11.95749 -11.36336 -11.15232 -10.65571 -10.04418 -9.29704 -8.99674 -8.21946 -6.31496 -0.67184 -0.14426 0.11850 1.19497 1.42925 1.44394 1.56840 1.60943 2.00387 2.11988 2.26743 2.29380 2.41959 2.69249 3.00529 3.12688 3.39766 3.54846 3.65562 3.77335 3.94276 4.11729 4.24128 4.26423 4.34860 4.35935 4.37544 4.40202 4.50602 4.60100 4.69262 4.71730 4.78976 4.83556 4.90226 5.05476 5.24126 5.24987 5.58944 5.85552 5.97475 6.29838 6.30641 6.54297 6.84980 6.93879 7.38471 8.89405 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002168 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.983665 B =12910.368808 C =13548.772704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.309 6.309 3 C 0.153 3.847 4 C -0.204 4.204 5 C 0.137 3.863 6 F -0.124 7.124 7 C -0.077 4.077 8 C 0.204 3.796 9 N -0.384 5.384 10 O 0.080 5.920 11 C 0.212 3.788 12 C 0.153 3.847 13 N -0.687 5.687 14 C 0.211 3.789 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.279 1.279 23 N -0.478 5.478 24 C -0.108 4.108 25 C 0.086 3.914 26 O -0.313 6.313 27 C 0.013 3.987 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.184 0.816 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.341 0.659 35 H -0.017 1.017 36 H 0.014 0.986 37 H 0.266 0.734 38 H 0.162 0.838 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -28.824 -7.472 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.221 6.221 3 C 0.105 3.895 4 C -0.224 4.224 5 C 0.115 3.885 6 F -0.103 7.103 7 C -0.080 4.080 8 C -0.066 4.066 9 N -0.092 5.092 10 O 0.021 5.979 11 C -0.009 4.009 12 C 0.022 3.978 13 N -0.320 5.320 14 C 0.084 3.916 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.205 1.205 23 N -0.211 5.211 24 C -0.128 4.128 25 C 0.040 3.960 26 O -0.226 6.226 27 C -0.081 4.081 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.201 0.799 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.001 0.999 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.179 0.821 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.045 -29.876 -7.461 30.861 hybrid contribution 0.729 1.777 0.488 1.982 sum -1.316 -28.099 -6.973 28.981 Atomic orbital electron populations 1.23573 0.75550 1.06471 1.02967 1.86208 1.24025 1.24359 1.87523 1.18134 0.88942 0.85444 0.96948 1.21082 1.02734 0.88397 1.10158 1.17370 0.87249 0.82925 1.00957 1.91593 1.76181 1.49302 1.93198 1.17137 0.91186 0.87865 1.11796 1.23899 0.86812 0.94207 1.01640 1.74797 1.17273 0.95020 1.22105 1.85243 1.34830 1.12244 1.65577 1.28971 0.79057 0.99245 0.93674 1.20506 1.05126 0.78772 0.93402 1.60540 1.46436 1.14885 1.10187 1.19278 0.94944 0.80949 0.96447 1.21500 1.50270 0.92564 0.93075 0.92100 1.25832 0.94685 0.96784 1.01982 1.70060 1.50834 1.02485 1.33487 0.85343 0.77755 0.78220 0.79324 1.19117 1.20210 1.20518 1.72188 1.30484 0.98287 1.20131 1.20893 1.01269 0.88578 1.02092 1.18046 0.88783 0.85997 1.03214 1.86187 1.20748 1.26850 1.88863 1.23446 0.76404 1.06020 1.02233 0.90909 0.91097 0.85527 0.79927 0.89258 0.86532 0.84137 0.99890 0.96832 0.92525 0.82076 0.91739 0.91949 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.31 -5.25 10.27 -78.67 -0.81 -6.06 16 3 C 0.15 3.00 6.70 22.62 0.15 3.15 16 4 C -0.20 -3.91 9.00 22.36 0.20 -3.71 16 5 C 0.14 3.58 7.27 22.58 0.16 3.75 16 6 F -0.12 -3.85 15.79 44.97 0.71 -3.14 16 7 C -0.08 -2.13 5.88 -19.99 -0.12 -2.25 16 8 C 0.20 6.65 7.78 137.22 1.07 7.72 16 9 N -0.38 -12.10 11.86 -59.02 -0.70 -12.80 16 10 O 0.08 2.51 11.29 74.66 0.84 3.35 16 11 C 0.21 6.95 8.01 88.36 0.71 7.65 16 12 C 0.15 4.97 6.31 85.56 0.54 5.51 16 13 N -0.69 -28.14 6.48 -521.98 -3.38 -31.52 16 14 C 0.21 10.53 5.44 85.56 0.47 11.00 16 15 C -0.54 -29.60 9.32 25.60 0.24 -29.36 16 16 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 17 C 0.01 0.33 5.46 84.65 0.46 0.79 16 18 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 19 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 N -0.48 -17.02 10.24 -302.43 -3.10 -20.12 16 24 C -0.11 -2.42 8.67 22.56 0.20 -2.23 16 25 C 0.09 1.79 6.69 22.52 0.15 1.95 16 26 O -0.31 -5.96 10.28 -79.95 -0.82 -6.78 16 27 C 0.01 0.15 9.81 113.37 1.11 1.26 16 28 H 0.07 0.42 7.64 -2.39 -0.02 0.40 16 29 H 0.07 0.45 7.67 -2.39 -0.02 0.43 16 30 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.18 2.34 6.27 -2.91 -0.02 2.32 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.34 13.28 8.72 -89.70 -0.78 12.50 16 35 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.16 3.21 6.09 -2.91 -0.02 3.19 16 39 H 0.06 0.67 7.66 -2.38 -0.02 0.65 16 40 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 41 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -70.08 363.17 1.83 -68.25 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.32 Total: 10.58 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.45 Total: 6.42 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -6.89 Total: -118.25 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.79 Total: -9.49 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.71 Total: -3.14 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.08 1.83 -68.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.511 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds