Wall clock time and date at job start Tue Mar 31 2020 20:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33314 * 125.13004 * 2 1 4 4 C 1.38866 * 114.90121 * 179.74852 * 3 2 1 5 5 N 1.40379 * 122.64510 * 180.22218 * 4 3 2 6 6 C 1.34778 * 119.99899 * 30.17894 * 5 4 3 7 7 O 1.21407 * 119.99798 * 5.04429 * 6 5 4 8 8 C 1.49294 * 119.99751 * 185.03744 * 6 5 4 9 9 O 1.21366 * 120.00511 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99751 * 180.02562 * 8 6 5 11 11 C 1.46504 * 119.99822 * 180.02562 * 10 8 6 12 12 C 1.53033 * 109.46078 * 275.02633 * 11 10 8 13 13 C 1.53195 * 109.31317 * 178.60093 * 12 11 10 14 14 N 1.46924 * 108.76478 * 54.65912 * 13 12 11 15 15 C 1.36930 * 120.63226 * 126.40437 * 14 13 12 16 16 H 1.07993 * 120.00195 * 330.76743 * 15 14 13 17 17 C 1.38820 * 119.99865 * 150.77037 * 15 14 13 18 18 N 1.31613 * 119.99938 * 347.93265 * 17 15 14 19 19 Si 1.86802 * 119.99748 * 167.93576 * 17 15 14 20 20 H 1.48503 * 109.47202 * 59.99934 * 19 17 15 21 21 H 1.48501 * 109.46999 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47061 * 299.99666 * 19 17 15 23 23 C 1.46931 * 118.73676 * 306.38029 * 14 13 12 24 24 C 1.53040 * 109.45614 * 154.97375 * 11 10 8 25 25 C 1.33952 * 114.70689 * 0.25018 * 4 3 2 26 26 S 1.75856 * 125.12226 * 180.13455 * 2 1 3 27 27 H 1.09002 * 109.46635 * 89.99996 * 1 2 3 28 28 H 1.09000 * 109.47685 * 210.00302 * 1 2 3 29 29 H 1.09005 * 109.47122 * 330.00644 * 1 2 3 30 30 H 1.07997 * 122.54843 * 0.02587 * 3 2 1 31 31 H 0.97004 * 120.00226 * 210.17152 * 5 4 3 32 32 H 0.97002 * 120.00270 * 0.02562 * 10 8 6 33 33 H 1.09003 * 109.46240 * 35.00413 * 11 10 8 34 34 H 1.09002 * 109.50166 * 298.56647 * 12 11 10 35 35 H 1.09001 * 109.49882 * 58.66458 * 12 11 10 36 36 H 1.09003 * 109.59836 * 294.86696 * 13 12 11 37 37 H 1.08997 * 109.70320 * 174.50825 * 13 12 11 38 38 H 0.97000 * 119.99893 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.58849 * 293.82417 * 23 14 13 40 40 H 1.09001 * 109.70224 * 173.45959 * 23 14 13 41 41 H 1.09004 * 109.50007 * 301.33428 * 24 11 10 42 42 H 1.08991 * 109.49910 * 61.40341 * 24 11 10 43 43 H 1.07999 * 125.20666 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2742 1.0903 0.0000 4 6 3.6408 0.8437 0.0055 5 7 4.5959 1.8725 0.0109 6 6 4.3124 3.0521 0.5980 7 8 3.2684 3.1946 1.2012 8 6 5.2822 4.1834 0.5067 9 8 6.3257 4.0412 -0.0965 10 7 4.9990 5.3629 1.0942 11 6 5.9504 6.4733 1.0042 12 6 6.9972 6.3389 2.1123 13 6 8.0103 7.4818 1.9936 14 7 7.2847 8.7593 2.0013 15 6 7.6171 9.7453 2.8914 16 1 8.0360 9.4863 3.8525 17 6 7.4157 11.0778 2.5584 18 7 7.1335 11.4103 1.3166 19 14 7.5451 12.3988 3.8727 20 1 8.9079 12.3785 4.4625 21 1 7.2894 13.7292 3.2643 22 1 6.5416 12.1391 4.9361 23 6 6.1957 8.9590 1.0352 24 6 5.2031 7.7992 1.1645 25 6 3.9757 -0.4533 0.0047 26 16 2.5188 -1.4384 -0.0034 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5138 30 1 1.8640 2.0894 0.0004 31 1 5.4599 1.7344 -0.4077 32 1 4.1652 5.4766 1.5767 33 1 6.4447 6.4502 0.0329 34 1 6.5064 6.3870 3.0844 35 1 7.5131 5.3839 2.0117 36 1 8.5659 7.3826 1.0611 37 1 8.7015 7.4492 2.8358 38 1 6.9923 12.3414 1.0840 39 1 6.6032 8.9803 0.0245 40 1 5.6871 9.9001 1.2441 41 1 4.4418 7.8838 0.3890 42 1 4.7289 7.8332 2.1452 43 1 4.9857 -0.8355 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602024958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:49 Heat of formation + Delta-G solvation = -12.488787 kcal Electronic energy + Delta-G solvation = -26127.053476 eV Core-core repulsion = 22299.666485 eV Total energy + Delta-G solvation = -3827.386991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14164 -39.45651 -37.85344 -37.36432 -35.01909 -34.29538 -32.19398 -31.52307 -30.23537 -29.52174 -27.18137 -26.15521 -24.64222 -22.72448 -22.28584 -21.76361 -20.56301 -19.68179 -19.65130 -18.50561 -17.68568 -16.84663 -16.59513 -16.34227 -15.72254 -15.50345 -14.84179 -14.53676 -14.36834 -14.11454 -13.97613 -13.73174 -13.55756 -13.54809 -13.03778 -12.92910 -12.68681 -12.56516 -12.45608 -12.32585 -11.80624 -11.53649 -11.15490 -11.08979 -10.91249 -10.75625 -10.57870 -10.54352 -10.35426 -10.08672 -9.93134 -9.76352 -9.54158 -8.94071 -8.93567 -8.50570 -8.29546 -6.70655 -5.81699 -3.27618 0.53833 1.20491 1.24173 1.50895 2.28615 2.44451 3.14978 3.36736 3.42323 3.43256 3.52674 4.28630 4.46441 4.49754 4.81959 4.92170 5.12308 5.16051 5.25042 5.35962 5.42254 5.43047 5.49110 5.62186 5.69743 5.76111 5.83236 5.99684 6.09714 6.20967 6.23257 6.43086 6.46270 6.51226 6.65436 6.73821 6.81285 6.92797 7.28100 7.29332 7.55684 7.63840 7.75644 7.94341 8.42850 9.18247 9.79938 10.36671 11.26683 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.001949 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.851890 B =14363.015463 C =14751.037524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.167 4.167 3 C -0.136 4.136 4 C 0.143 3.857 5 N -0.636 5.636 6 C 0.510 3.490 7 O -0.500 6.500 8 C 0.506 3.494 9 O -0.520 6.520 10 N -0.686 5.686 11 C 0.148 3.852 12 C -0.141 4.141 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.906 5.906 19 Si 0.906 3.094 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.173 3.827 24 C -0.148 4.148 25 C -0.258 4.258 26 S 0.122 5.878 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.424 0.576 32 H 0.409 0.591 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 -24.207 -4.228 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.285 4.285 3 C -0.167 4.167 4 C 0.037 3.963 5 N -0.285 5.285 6 C 0.292 3.708 7 O -0.373 6.373 8 C 0.285 3.715 9 O -0.397 6.397 10 N -0.337 5.337 11 C 0.045 3.955 12 C -0.181 4.181 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.551 5.551 19 Si 0.736 3.264 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.047 3.953 24 C -0.188 4.188 25 C -0.397 4.397 26 S 0.384 5.616 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.171 0.829 31 H 0.262 0.738 32 H 0.245 0.755 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.515 -25.478 -4.297 28.287 hybrid contribution 0.528 2.121 0.655 2.281 sum -10.987 -23.357 -3.643 26.068 Atomic orbital electron populations 1.20371 0.87334 1.03502 1.02970 1.24365 1.00312 0.95396 1.08434 1.19996 0.91227 1.00736 1.04725 1.16669 0.89250 0.86988 1.03351 1.43041 1.18210 1.11369 1.55831 1.20572 0.87416 0.83779 0.79057 1.90775 1.25398 1.82114 1.39032 1.19727 0.86612 0.84042 0.81094 1.90784 1.25059 1.82178 1.41672 1.46240 1.23641 1.11384 1.52478 1.21293 0.89456 0.84254 1.00465 1.22412 0.97892 0.99719 0.98060 1.20873 0.92397 0.85609 0.99028 1.44079 1.35012 1.12510 1.39969 1.19157 1.38863 0.85444 0.94701 0.91676 1.25121 1.01170 0.97490 0.95871 1.69948 1.52287 1.16932 1.15927 0.86311 0.78118 0.80947 0.81005 1.20868 1.21600 1.21000 1.20818 0.87409 0.95233 0.91863 1.22597 0.99722 0.95182 1.01313 1.25194 1.03236 0.95061 1.16195 1.84144 0.95072 1.08426 1.73955 0.90485 0.91098 0.90152 0.82897 0.73762 0.75539 0.89449 0.91996 0.92618 0.96058 0.92368 0.93473 0.96043 0.88370 0.92479 0.91882 0.81318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.37 36.01 0.37 -0.13 16 2 C -0.17 -1.46 6.50 -36.03 -0.23 -1.70 16 3 C -0.14 -1.45 8.69 -41.07 -0.36 -1.81 16 4 C 0.14 1.50 6.27 -85.22 -0.53 0.97 16 5 N -0.64 -6.83 5.40 -11.30 -0.06 -6.90 16 6 C 0.51 6.54 7.73 -11.66 -0.09 6.45 16 7 O -0.50 -7.11 14.23 5.45 0.08 -7.03 16 8 C 0.51 7.21 7.85 -11.66 -0.09 7.12 16 9 O -0.52 -8.44 16.14 5.48 0.09 -8.35 16 10 N -0.69 -9.80 5.07 -54.25 -0.28 -10.08 16 11 C 0.15 2.48 2.42 -67.89 -0.16 2.32 16 12 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 13 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 14 N -0.59 -14.50 2.99 -172.31 -0.52 -15.01 16 15 C -0.25 -6.77 9.60 -15.06 -0.14 -6.91 16 16 H 0.07 1.72 7.86 -52.49 -0.41 1.30 16 17 C 0.00 0.05 5.04 -17.43 -0.09 -0.04 16 18 N -0.91 -25.71 10.97 55.49 0.61 -25.10 16 19 Si 0.91 21.37 29.57 -169.99 -5.03 16.34 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.17 3.97 5.27 -3.70 -0.02 3.95 16 24 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16 25 C -0.26 -2.22 11.20 29.23 0.33 -1.90 16 26 S 0.12 0.94 23.32 -107.50 -2.51 -1.57 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 1.77 6.61 -52.49 -0.35 1.42 16 31 H 0.42 3.86 8.30 -40.82 -0.34 3.52 16 32 H 0.41 5.28 8.07 -40.82 -0.33 4.95 16 33 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 2.52 5.98 -51.93 -0.31 2.21 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -30.58 369.64 -9.29 -39.87 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.91 Total: 6.30 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.34 Total: 5.96 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.24 Total: -57.09 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.17 Total: -15.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.58 -9.29 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602024958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.383 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds