Wall clock time and date at job start Tue Mar 31 2020 20:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33314 * 125.13004 * 2 1 4 4 C 1.38866 * 114.90121 * 179.74852 * 3 2 1 5 5 N 1.40379 * 122.64510 * 180.22218 * 4 3 2 6 6 C 1.34778 * 119.99899 * 30.17894 * 5 4 3 7 7 O 1.21407 * 119.99798 * 5.04429 * 6 5 4 8 8 C 1.49294 * 119.99751 * 185.03744 * 6 5 4 9 9 O 1.21366 * 120.00511 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99751 * 180.02562 * 8 6 5 11 11 C 1.46504 * 119.99822 * 180.02562 * 10 8 6 12 12 C 1.53033 * 109.46078 * 275.02633 * 11 10 8 13 13 C 1.53195 * 109.31317 * 178.60093 * 12 11 10 14 14 N 1.46924 * 108.76478 * 54.65912 * 13 12 11 15 15 C 1.36930 * 120.63226 * 126.40437 * 14 13 12 16 16 H 1.07993 * 120.00195 * 330.76743 * 15 14 13 17 17 C 1.38820 * 119.99865 * 150.77037 * 15 14 13 18 18 N 1.31613 * 119.99938 * 347.93265 * 17 15 14 19 19 Si 1.86802 * 119.99748 * 167.93576 * 17 15 14 20 20 H 1.48503 * 109.47202 * 59.99934 * 19 17 15 21 21 H 1.48501 * 109.46999 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47061 * 299.99666 * 19 17 15 23 23 C 1.46931 * 118.73676 * 306.38029 * 14 13 12 24 24 C 1.53040 * 109.45614 * 154.97375 * 11 10 8 25 25 C 1.33952 * 114.70689 * 0.25018 * 4 3 2 26 26 S 1.75856 * 125.12226 * 180.13455 * 2 1 3 27 27 H 1.09002 * 109.46635 * 89.99996 * 1 2 3 28 28 H 1.09000 * 109.47685 * 210.00302 * 1 2 3 29 29 H 1.09005 * 109.47122 * 330.00644 * 1 2 3 30 30 H 1.07997 * 122.54843 * 0.02587 * 3 2 1 31 31 H 0.97004 * 120.00226 * 210.17152 * 5 4 3 32 32 H 0.97002 * 120.00270 * 0.02562 * 10 8 6 33 33 H 1.09003 * 109.46240 * 35.00413 * 11 10 8 34 34 H 1.09002 * 109.50166 * 298.56647 * 12 11 10 35 35 H 1.09001 * 109.49882 * 58.66458 * 12 11 10 36 36 H 1.09003 * 109.59836 * 294.86696 * 13 12 11 37 37 H 1.08997 * 109.70320 * 174.50825 * 13 12 11 38 38 H 0.97000 * 119.99893 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.58849 * 293.82417 * 23 14 13 40 40 H 1.09001 * 109.70224 * 173.45959 * 23 14 13 41 41 H 1.09004 * 109.50007 * 301.33428 * 24 11 10 42 42 H 1.08991 * 109.49910 * 61.40341 * 24 11 10 43 43 H 1.07999 * 125.20666 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2742 1.0903 0.0000 4 6 3.6408 0.8437 0.0055 5 7 4.5959 1.8725 0.0109 6 6 4.3124 3.0521 0.5980 7 8 3.2684 3.1946 1.2012 8 6 5.2822 4.1834 0.5067 9 8 6.3257 4.0412 -0.0965 10 7 4.9990 5.3629 1.0942 11 6 5.9504 6.4733 1.0042 12 6 6.9972 6.3389 2.1123 13 6 8.0103 7.4818 1.9936 14 7 7.2847 8.7593 2.0013 15 6 7.6171 9.7453 2.8914 16 1 8.0360 9.4863 3.8525 17 6 7.4157 11.0778 2.5584 18 7 7.1335 11.4103 1.3166 19 14 7.5451 12.3988 3.8727 20 1 8.9079 12.3785 4.4625 21 1 7.2894 13.7292 3.2643 22 1 6.5416 12.1391 4.9361 23 6 6.1957 8.9590 1.0352 24 6 5.2031 7.7992 1.1645 25 6 3.9757 -0.4533 0.0047 26 16 2.5188 -1.4384 -0.0034 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5138 30 1 1.8640 2.0894 0.0004 31 1 5.4599 1.7344 -0.4077 32 1 4.1652 5.4766 1.5767 33 1 6.4447 6.4502 0.0329 34 1 6.5064 6.3870 3.0844 35 1 7.5131 5.3839 2.0117 36 1 8.5659 7.3826 1.0611 37 1 8.7015 7.4492 2.8358 38 1 6.9923 12.3414 1.0840 39 1 6.6032 8.9803 0.0245 40 1 5.6871 9.9001 1.2441 41 1 4.4418 7.8838 0.3890 42 1 4.7289 7.8332 2.1452 43 1 4.9857 -0.8355 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602024958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:48 Heat of formation + Delta-G solvation = -32.368368 kcal Electronic energy + Delta-G solvation = -26127.915519 eV Core-core repulsion = 22299.666485 eV Total energy + Delta-G solvation = -3828.249034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15691 -40.56985 -39.04384 -38.59026 -36.31873 -35.36918 -33.94525 -32.19388 -31.86529 -31.24883 -27.83351 -27.55559 -26.15253 -24.03604 -23.78411 -22.93675 -21.68963 -21.17688 -20.39965 -19.77970 -18.65503 -18.48301 -17.61989 -17.31156 -16.98393 -16.66235 -16.54117 -15.70561 -15.50997 -15.35873 -15.15083 -14.88028 -14.79665 -14.72359 -14.24495 -14.18937 -14.13317 -13.55859 -13.25951 -13.22061 -12.97832 -12.91664 -12.82969 -12.60295 -12.55114 -12.23623 -12.04966 -11.88140 -11.78825 -11.62334 -11.40732 -11.35345 -10.80903 -10.56059 -10.24064 -9.59560 -8.99246 -8.68490 -7.86584 -5.35391 -0.21235 0.25998 0.54795 0.79131 1.34004 1.49369 1.50769 1.57616 1.58993 2.12373 2.51748 2.53651 3.23967 3.31035 3.66462 3.82582 3.84079 3.97621 4.18317 4.27326 4.39287 4.43882 4.47450 4.63061 4.70629 4.73653 4.76492 4.82752 4.91065 4.95454 5.01404 5.12467 5.14515 5.17298 5.26849 5.30760 5.43830 5.48786 5.64239 5.72576 5.84806 6.24423 6.40960 6.59172 6.81622 7.15604 7.84335 8.36416 9.19600 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.001949 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.851890 B =14363.015463 C =14751.037524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.171 4.171 3 C -0.162 4.162 4 C 0.116 3.884 5 N -0.624 5.624 6 C 0.516 3.484 7 O -0.517 6.517 8 C 0.511 3.489 9 O -0.540 6.540 10 N -0.679 5.679 11 C 0.160 3.840 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.610 5.610 15 C -0.262 4.262 16 H 0.067 0.933 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.277 1.277 23 C 0.178 3.822 24 C -0.132 4.132 25 C -0.255 4.255 26 S 0.163 5.837 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.431 0.569 32 H 0.418 0.582 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.014 0.986 37 H 0.060 0.940 38 H 0.251 0.749 39 H -0.001 1.001 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.122 -26.603 -3.612 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.289 4.289 3 C -0.193 4.193 4 C 0.010 3.990 5 N -0.272 5.272 6 C 0.297 3.703 7 O -0.392 6.392 8 C 0.291 3.709 9 O -0.417 6.417 10 N -0.331 5.331 11 C 0.056 3.944 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.334 5.334 15 C -0.392 4.392 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.203 1.203 23 C 0.051 3.949 24 C -0.172 4.172 25 C -0.393 4.393 26 S 0.426 5.574 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.271 0.729 32 H 0.256 0.744 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.017 0.983 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.391 -27.936 -3.682 30.781 hybrid contribution 0.807 2.711 0.409 2.858 sum -11.584 -25.224 -3.273 27.949 Atomic orbital electron populations 1.20483 0.85720 1.04180 1.03985 1.24737 1.01655 0.95554 1.06960 1.19982 0.91744 1.00685 1.06850 1.16826 0.89145 0.87442 1.05554 1.42918 1.18582 1.10810 1.54914 1.20160 0.86768 0.83956 0.79410 1.90776 1.25841 1.82398 1.40135 1.19934 0.86497 0.84196 0.80275 1.90778 1.25997 1.82545 1.42407 1.45966 1.23522 1.10869 1.52748 1.20926 0.89461 0.84518 0.99484 1.22221 0.97313 0.98681 0.98475 1.20972 0.93154 0.85250 0.98715 1.44332 1.36038 1.13238 1.39798 1.19482 1.38232 0.86286 0.95230 0.91491 1.25864 1.01546 0.99467 0.97697 1.70118 1.53615 1.16853 1.17630 0.85305 0.78234 0.78026 0.78622 1.20305 1.22072 1.20267 1.20611 0.87852 0.96032 0.90359 1.22318 0.98741 0.93750 1.02373 1.25548 1.04870 0.94628 1.14250 1.84034 0.93793 1.07016 1.72585 0.89226 0.89618 0.90287 0.84511 0.72938 0.74447 0.90738 0.91644 0.91372 0.96767 0.92184 0.94005 0.98270 0.91386 0.90392 0.91366 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.37 71.24 0.74 -0.15 16 2 C -0.17 -2.71 6.50 24.57 0.16 -2.55 16 3 C -0.16 -3.33 8.69 21.31 0.19 -3.14 16 4 C 0.12 2.28 6.27 36.95 0.23 2.51 16 5 N -0.62 -12.72 5.40 -308.00 -1.66 -14.38 16 6 C 0.52 12.76 7.73 87.22 0.67 13.43 16 7 O -0.52 -14.34 14.23 -3.42 -0.05 -14.39 16 8 C 0.51 13.98 7.85 87.22 0.68 14.66 16 9 O -0.54 -16.93 16.14 -3.30 -0.05 -16.99 16 10 N -0.68 -18.47 5.07 -443.89 -2.25 -20.72 16 11 C 0.16 5.21 2.42 45.02 0.11 5.32 16 12 C -0.13 -4.33 5.65 30.67 0.17 -4.15 16 13 C 0.15 6.03 6.52 86.36 0.56 6.60 16 14 N -0.61 -30.21 2.99 -699.07 -2.09 -32.30 16 15 C -0.26 -14.20 9.60 84.04 0.81 -13.39 16 16 H 0.07 3.53 7.86 -2.91 -0.02 3.50 16 17 C -0.05 -2.78 5.04 84.86 0.43 -2.35 16 18 N -0.94 -54.47 10.97 21.65 0.24 -54.23 16 19 Si 0.97 44.30 29.57 68.60 2.03 46.33 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.18 8.33 5.27 86.37 0.46 8.79 16 24 C -0.13 -4.65 5.55 30.68 0.17 -4.48 16 25 C -0.25 -3.82 11.20 66.84 0.75 -3.07 16 26 S 0.16 2.10 23.32 -56.49 -1.32 0.78 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.14 3.20 6.61 -2.91 -0.02 3.18 16 31 H 0.43 7.30 8.30 -92.71 -0.77 6.53 16 32 H 0.42 10.12 8.07 -92.71 -0.75 9.37 16 33 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.07 3.61 5.98 -2.39 -0.01 3.59 16 41 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -66.04 369.64 0.51 -65.54 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.46 Total: 22.34 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.13 Total: 18.02 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -5.77 Total: -121.63 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.10 Total: -31.37 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.32 Total: 0.78 kcal Total: -66.04 0.51 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602024958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.168 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds