Wall clock time and date at job start Tue Mar 31 2020 19:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48499 * 109.47028 * 269.99773 * 3 2 1 5 5 H 1.48496 * 109.47213 * 30.00087 * 3 2 1 6 6 H 1.48509 * 109.47361 * 149.99689 * 3 2 1 7 7 C 1.38817 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00189 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.90705 * 336.25715 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50245 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 N 1.46501 * 113.66387 * 139.88885 * 13 12 10 16 16 C 1.34773 * 120.00122 * 107.55425 * 15 13 12 17 17 O 1.21639 * 119.99696 * 359.97438 * 16 15 13 18 18 C 1.47263 * 120.00340 * 179.97438 * 16 15 13 19 19 C 1.35210 * 123.14136 * 179.70911 * 18 16 15 20 20 S 1.70938 * 108.82513 * 179.90301 * 19 18 16 21 21 C 1.70771 * 91.13248 * 0.29811 * 20 19 18 22 22 C 1.50697 * 124.72265 * 179.81865 * 21 20 19 23 23 H 1.09003 * 110.27221 * 165.64159 * 22 21 20 24 24 C 1.54945 * 110.31340 * 287.83473 * 22 21 20 25 25 C 1.55305 * 100.94254 * 155.35742 * 24 22 21 26 26 C 1.54380 * 102.25166 * 325.86985 * 25 24 22 27 27 O 1.43238 * 107.58956 * 21.35594 * 26 25 24 28 28 N 1.28652 * 110.55698 * 359.82366 * 21 20 19 29 29 C 1.53781 * 113.61619 * 205.00090 * 10 9 7 30 30 H 0.96995 * 120.00333 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 33 33 H 1.08994 * 113.61387 * 334.57115 * 12 10 9 34 34 H 0.97002 * 119.99797 * 287.54884 * 15 13 12 35 35 H 1.07995 * 125.58670 * 0.02562 * 19 18 16 36 36 H 1.08995 * 111.12808 * 273.28531 * 24 22 21 37 37 H 1.09004 * 111.12317 * 37.44307 * 24 22 21 38 38 H 1.09002 * 110.84921 * 207.67892 * 25 24 22 39 39 H 1.08994 * 110.84349 * 84.05781 * 25 24 22 40 40 H 1.08997 * 109.83054 * 261.84117 * 26 25 24 41 41 H 1.09003 * 109.90093 * 140.91121 * 26 25 24 42 42 H 1.09002 * 113.61445 * 25.43587 * 29 10 9 43 43 H 1.09002 * 113.61408 * 156.25317 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5282 -3.2975 0.4068 12 6 4.7876 -2.7932 -1.3412 13 6 6.0155 -2.0249 -0.8193 14 1 5.9919 -0.9588 -1.0451 15 7 7.2930 -2.6529 -1.1656 16 6 8.0859 -2.0958 -2.1022 17 8 7.7405 -1.0717 -2.6604 18 6 9.3703 -2.7267 -2.4499 19 6 10.2113 -2.2260 -3.3827 20 16 11.5838 -3.2394 -3.4887 21 6 10.9522 -4.2773 -2.2887 22 6 11.6367 -5.5207 -1.7823 23 1 11.1666 -5.8616 -0.8598 24 6 11.5894 -6.6362 -2.8566 25 6 12.8192 -7.4919 -2.4475 26 6 13.8015 -6.4233 -1.9217 27 8 13.0339 -5.2675 -1.5658 28 7 9.8106 -3.8501 -1.8772 29 6 5.5258 -2.3654 0.5982 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 0.0014 32 1 4.9720 -3.8567 -1.4931 33 1 4.3063 -2.3196 -2.1967 34 1 7.5682 -3.4697 -0.7206 35 1 10.0442 -1.3313 -3.9640 36 1 10.6675 -7.2131 -2.7836 37 1 11.7138 -6.2231 -3.8576 38 1 13.2357 -8.0103 -3.3111 39 1 12.5558 -8.1977 -1.6598 40 1 14.5188 -6.1653 -2.7007 41 1 14.3276 -6.8020 -1.0454 42 1 5.6404 -1.5463 1.3082 43 1 5.9113 -3.3117 0.9778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020152398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:57 Heat of formation + Delta-G solvation = 2.774956 kcal Electronic energy + Delta-G solvation = -25769.610716 eV Core-core repulsion = 21942.885611 eV Total energy + Delta-G solvation = -3826.725105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.83815 -40.00521 -39.13099 -37.82007 -34.14062 -32.89435 -32.61932 -32.02657 -30.31420 -29.21788 -26.37045 -25.19519 -24.61746 -23.47086 -22.34033 -22.23616 -21.38067 -20.15473 -19.20299 -18.69403 -17.58346 -17.22703 -16.77559 -16.64597 -16.00759 -15.72628 -15.32940 -14.91995 -14.79152 -14.36073 -14.24002 -13.97037 -13.78592 -13.45949 -13.04309 -12.71852 -12.47877 -12.37604 -12.26452 -12.18164 -12.07553 -12.01799 -11.99517 -11.54761 -10.93843 -10.84452 -10.46135 -10.37589 -10.31549 -10.14382 -10.05359 -9.98549 -9.77767 -9.58054 -9.27009 -8.92958 -8.74338 -7.29488 -5.77839 -3.14351 0.16016 0.85154 1.29113 1.65441 2.91114 3.24768 3.33252 3.40492 3.44447 3.48353 3.67963 3.82772 4.23871 4.32711 4.51259 4.57506 4.59711 4.70386 4.88124 4.94580 4.99995 5.09748 5.10095 5.14399 5.21819 5.23774 5.25831 5.42197 5.46256 5.51084 5.71451 5.78451 6.03839 6.11533 6.27087 6.29002 6.52164 6.59397 6.68769 6.88950 7.03731 7.62547 7.98906 8.22436 8.41432 9.18866 9.91397 10.09956 11.39992 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002124 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.899402 B =13178.651680 C =13835.699154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.178 3.822 11 H 0.078 0.922 12 C -0.181 4.181 13 C 0.119 3.881 14 H 0.111 0.889 15 N -0.697 5.697 16 C 0.590 3.410 17 O -0.534 6.534 18 C 0.014 3.986 19 C -0.229 4.229 20 S 0.241 5.759 21 C 0.016 3.984 22 C 0.160 3.840 23 H 0.107 0.893 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.049 3.951 27 O -0.373 6.373 28 N -0.433 5.433 29 C -0.164 4.164 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.406 0.594 35 H 0.192 0.808 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.241 -16.471 -6.575 36.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.111 0.889 9 N -0.370 5.370 10 C 0.065 3.935 11 H 0.096 0.904 12 C -0.223 4.223 13 C 0.015 3.985 14 H 0.129 0.871 15 N -0.346 5.346 16 C 0.372 3.628 17 O -0.411 6.411 18 C -0.122 4.122 19 C -0.371 4.371 20 S 0.499 5.501 21 C -0.263 4.263 22 C 0.099 3.901 23 H 0.125 0.875 24 C -0.186 4.186 25 C -0.192 4.192 26 C -0.027 4.027 27 O -0.292 6.292 28 N -0.150 5.150 29 C -0.204 4.204 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.209 0.791 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 32.396 -15.860 -7.029 36.748 hybrid contribution -0.191 1.135 0.301 1.189 sum 32.204 -14.726 -6.728 36.045 Atomic orbital electron populations 1.69692 1.05090 1.25930 1.57119 1.24671 0.95255 0.97250 1.01727 0.86585 0.79234 0.84953 0.78015 1.20873 1.21623 1.20249 1.19092 0.80295 0.94868 1.43502 0.88942 1.42544 1.04076 1.01565 1.88780 1.20851 0.89718 0.90230 0.92696 0.90403 1.24317 0.96481 0.99361 1.02138 1.22782 0.80510 0.98778 0.96385 0.87078 1.45924 1.20410 1.28675 1.39575 1.17091 0.81862 0.83666 0.80146 1.90843 1.73503 1.23788 1.52920 1.20493 0.98935 0.93912 0.98816 1.26766 0.98676 1.07307 1.04330 1.82847 1.17892 1.14894 1.34514 1.26832 0.95751 1.02791 1.00971 1.21229 0.82355 0.87768 0.98763 0.87546 1.23378 1.00071 0.96226 0.98963 1.23144 0.95239 0.98387 1.02454 1.23216 0.94081 0.85161 1.00291 1.88482 1.15900 1.37629 1.87176 1.66789 1.11902 1.11016 1.25245 1.23915 0.98955 1.01941 0.95596 0.92977 0.80370 0.90731 0.90748 0.75822 0.79108 0.88589 0.89851 0.89327 0.89838 0.90770 0.90629 0.90886 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.63 27.74 -169.99 -4.71 17.92 16 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 7 C -0.25 -7.03 10.45 -15.06 -0.16 -7.19 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.73 -17.45 5.11 -52.64 -0.27 -17.72 16 10 C 0.18 3.39 4.56 -67.12 -0.31 3.08 16 11 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 12 C -0.18 -3.14 7.68 -25.82 -0.20 -3.34 16 13 C 0.12 1.97 4.13 -67.02 -0.28 1.69 16 14 H 0.11 2.11 7.46 -51.93 -0.39 1.73 16 15 N -0.70 -10.09 5.35 -54.05 -0.29 -10.38 16 16 C 0.59 9.34 7.80 -12.59 -0.10 9.24 16 17 O -0.53 -10.23 16.31 5.24 0.09 -10.14 16 18 C 0.01 0.18 6.70 -84.53 -0.57 -0.39 16 19 C -0.23 -2.48 10.62 29.65 0.31 -2.17 16 20 S 0.24 1.94 22.74 -107.50 -2.45 -0.51 16 21 C 0.02 0.15 6.35 -13.61 -0.09 0.06 16 22 C 0.16 1.14 3.96 -26.86 -0.11 1.04 16 23 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -0.68 6.56 -24.48 -0.16 -0.84 16 25 C -0.15 -0.47 7.02 -24.79 -0.17 -0.64 16 26 C 0.05 0.21 7.79 37.88 0.30 0.51 16 27 O -0.37 -2.85 10.87 -35.23 -0.38 -3.23 16 28 N -0.43 -5.04 10.12 -8.51 -0.09 -5.13 16 29 C -0.16 -2.55 7.57 -25.92 -0.20 -2.74 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.36 8.67 5.76 -40.82 -0.24 8.43 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.41 5.02 8.25 -40.82 -0.34 4.68 16 35 H 0.19 1.91 8.03 -52.49 -0.42 1.49 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.37 8.05 -51.93 -0.42 -0.04 16 38 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -34.73 373.07 -9.55 -44.28 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.04 Total: 9.51 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.81 Total: -1.58 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.13 Total: -61.88 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.30 Total: -13.37 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.45 Total: -0.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.73 -9.55 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020152398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.058 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds