Wall clock time and date at job start Tue Mar 31 2020 20:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00262 * 2 1 4 4 H 1.48493 * 109.46980 * 269.99900 * 3 2 1 5 5 H 1.48508 * 109.46959 * 29.99644 * 3 2 1 6 6 H 1.48499 * 109.47177 * 149.99694 * 3 2 1 7 7 C 1.38817 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99307 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00322 * 180.02562 * 7 2 1 10 10 C 1.46506 * 120.00221 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84538 * 23.79751 * 10 9 7 12 12 C 1.53775 * 113.61420 * 154.99934 * 10 9 7 13 13 C 1.53783 * 87.08112 * 89.11484 * 12 10 9 14 14 H 1.08996 * 113.61599 * 270.79603 * 13 12 10 15 15 N 1.46505 * 113.61241 * 139.97688 * 13 12 10 16 16 C 1.34778 * 119.99504 * 155.00012 * 15 13 12 17 17 O 1.21623 * 120.00305 * 359.97438 * 16 15 13 18 18 C 1.47268 * 119.99486 * 179.97438 * 16 15 13 19 19 C 1.35206 * 123.14093 * 179.97438 * 18 16 15 20 20 S 1.70938 * 108.83008 * 180.02562 * 19 18 16 21 21 C 1.70775 * 91.12849 * 0.02562 * 20 19 18 22 22 C 1.50696 * 124.72000 * 179.97438 * 21 20 19 23 23 H 1.08995 * 110.27846 * 194.38678 * 22 21 20 24 24 C 1.54951 * 110.39073 * 72.24460 * 22 21 20 25 25 C 1.55312 * 100.94225 * 204.59450 * 24 22 21 26 26 C 1.54380 * 102.25056 * 34.13333 * 25 24 22 27 27 O 1.43245 * 107.59000 * 338.64209 * 26 25 24 28 28 N 1.28640 * 110.55604 * 0.24472 * 21 20 19 29 29 C 1.53780 * 113.61008 * 252.49925 * 10 9 7 30 30 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00204 * 359.97438 * 9 7 2 32 32 H 1.08998 * 113.61654 * 334.56760 * 12 10 9 33 33 H 1.09003 * 113.68521 * 203.67100 * 12 10 9 34 34 H 0.97000 * 119.99874 * 335.00393 * 15 13 12 35 35 H 1.08003 * 125.58862 * 0.02850 * 19 18 16 36 36 H 1.09000 * 111.12523 * 322.51480 * 24 22 21 37 37 H 1.09000 * 111.12500 * 86.63597 * 24 22 21 38 38 H 1.08999 * 110.84840 * 275.94257 * 25 24 22 39 39 H 1.08999 * 110.84966 * 152.32055 * 25 24 22 40 40 H 1.08996 * 109.83192 * 219.13077 * 26 25 24 41 41 H 1.09002 * 109.83458 * 98.15431 * 26 25 24 42 42 H 1.09005 * 113.61195 * 156.33561 * 29 10 9 43 43 H 1.09000 * 113.62220 * 25.43068 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5280 -3.2969 -0.4046 12 6 5.5263 -2.3658 -0.5938 13 6 6.0124 -2.0238 0.8245 14 1 5.9883 -0.9575 1.0491 15 7 7.2899 -2.6500 1.1739 16 6 8.0799 -2.0912 2.1121 17 8 7.7326 -1.0669 2.6682 18 6 9.3638 -2.7211 2.4637 19 6 10.2050 -2.2155 3.3937 20 16 11.5759 -3.2302 3.5075 21 6 10.9479 -4.2700 2.3071 22 6 11.6350 -5.5128 1.8031 23 1 11.1675 -5.8549 0.8799 24 6 11.5865 -6.6295 2.8763 25 6 12.8179 -7.4838 2.4687 26 6 13.8003 -6.4138 1.9460 27 8 13.0325 -5.2582 1.5896 28 7 9.8092 -3.8415 1.8892 29 6 4.7866 -2.7928 1.3451 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0007 32 1 5.6414 -1.5470 -1.3041 33 1 5.9138 -3.3118 -0.9719 34 1 7.5671 -3.4668 0.7301 35 1 10.0381 -1.3176 3.9703 36 1 11.7085 -6.2173 3.8779 37 1 10.6649 -7.2067 2.8012 38 1 12.5567 -8.1891 1.6798 39 1 13.2331 -8.0027 3.3326 40 1 14.3273 -6.7920 1.0700 41 1 14.5160 -6.1558 2.7267 42 1 4.9707 -3.8563 1.4976 43 1 4.3046 -2.3188 2.2002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020152399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:01 Heat of formation + Delta-G solvation = 2.928830 kcal Electronic energy + Delta-G solvation = -25772.685786 eV Core-core repulsion = 21945.967353 eV Total energy + Delta-G solvation = -3826.718433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83811 -40.00515 -39.13691 -37.82461 -34.13961 -32.89217 -32.61845 -32.02630 -30.31336 -29.21769 -26.36866 -25.19982 -24.61638 -23.46969 -22.33981 -22.23447 -21.37907 -20.15348 -19.20186 -18.69232 -17.58513 -17.22679 -16.77336 -16.64470 -16.00460 -15.72476 -15.32881 -14.91982 -14.79242 -14.36108 -14.24179 -13.96985 -13.78506 -13.45735 -13.04013 -12.70428 -12.47909 -12.37715 -12.26300 -12.19929 -12.07757 -12.01588 -11.99383 -11.54608 -10.94157 -10.84808 -10.46291 -10.39552 -10.25692 -10.14481 -10.05118 -9.98321 -9.79660 -9.57902 -9.26978 -8.93180 -8.74170 -7.29444 -5.77790 -3.14315 0.16099 0.85264 1.29183 1.65662 2.91143 3.25144 3.33381 3.40512 3.45258 3.48110 3.68000 3.82833 4.23968 4.32806 4.51362 4.57643 4.59825 4.70416 4.88154 4.94434 5.00029 5.09698 5.10750 5.14428 5.21862 5.23466 5.25857 5.42433 5.46333 5.51274 5.71671 5.78748 6.03829 6.11562 6.27006 6.29051 6.52310 6.59342 6.68956 6.89207 7.03883 7.62830 7.98893 8.22771 8.41458 9.18893 9.91408 10.09964 11.40032 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025583 B = 0.002125 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.209786 B =13172.668258 C =13830.118509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.177 3.823 11 H 0.078 0.922 12 C -0.164 4.164 13 C 0.120 3.880 14 H 0.111 0.889 15 N -0.697 5.697 16 C 0.590 3.410 17 O -0.534 6.534 18 C 0.014 3.986 19 C -0.228 4.228 20 S 0.241 5.759 21 C 0.016 3.984 22 C 0.160 3.840 23 H 0.107 0.893 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.049 3.951 27 O -0.373 6.373 28 N -0.433 5.433 29 C -0.181 4.181 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.406 0.594 35 H 0.192 0.808 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.237 -16.451 6.624 36.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.111 0.889 9 N -0.370 5.370 10 C 0.065 3.935 11 H 0.096 0.904 12 C -0.204 4.204 13 C 0.016 3.984 14 H 0.129 0.871 15 N -0.346 5.346 16 C 0.372 3.628 17 O -0.410 6.410 18 C -0.122 4.122 19 C -0.371 4.371 20 S 0.498 5.502 21 C -0.263 4.263 22 C 0.099 3.901 23 H 0.124 0.876 24 C -0.186 4.186 25 C -0.192 4.192 26 C -0.027 4.027 27 O -0.292 6.292 28 N -0.149 5.149 29 C -0.223 4.223 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.242 0.758 35 H 0.209 0.791 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 32.392 -15.837 7.080 36.745 hybrid contribution -0.196 1.136 -0.284 1.187 sum 32.197 -14.702 6.796 36.041 Atomic orbital electron populations 1.69695 1.05092 1.25929 1.57120 1.24673 0.95258 0.97252 1.01724 0.86592 0.79456 0.84961 0.77867 1.20966 1.21600 1.20086 1.19092 0.80296 0.94868 1.43487 0.88945 1.42549 1.04075 1.01567 1.88774 1.20854 0.89724 0.90239 0.92684 0.90377 1.23915 0.98962 1.01949 0.95579 1.22760 0.80499 0.98817 0.96353 0.87068 1.45934 1.20490 1.28682 1.39510 1.17089 0.81866 0.83663 0.80151 1.90840 1.73368 1.23762 1.53059 1.20495 0.98895 0.93945 0.98823 1.26766 0.98639 1.07253 1.04415 1.82848 1.18074 1.14621 1.34620 1.26823 0.95881 1.02797 1.00827 1.21224 0.82325 0.87771 0.98800 0.87562 1.23378 1.00058 0.96223 0.98977 1.23146 0.95224 0.98387 1.02471 1.23218 0.94083 0.85157 1.00290 1.88484 1.15869 1.37600 1.87236 1.66783 1.11840 1.11102 1.25220 1.24285 0.96545 0.99344 1.02151 0.92980 0.80376 0.90874 0.89721 0.75831 0.79110 0.89858 0.88590 0.89837 0.89329 0.90632 0.90755 0.90724 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.60 27.74 -169.99 -4.71 17.89 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.78 6.52 56.52 0.37 -6.41 16 7 C -0.25 -7.03 10.45 -15.06 -0.16 -7.18 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 9 N -0.73 -17.44 5.11 -52.64 -0.27 -17.71 16 10 C 0.18 3.39 4.56 -67.12 -0.31 3.08 16 11 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 12 C -0.16 -2.54 7.58 -25.92 -0.20 -2.73 16 13 C 0.12 1.98 4.12 -67.11 -0.28 1.70 16 14 H 0.11 2.14 7.46 -51.93 -0.39 1.75 16 15 N -0.70 -10.12 5.35 -54.14 -0.29 -10.41 16 16 C 0.59 9.37 7.80 -12.59 -0.10 9.27 16 17 O -0.53 -10.27 16.31 5.26 0.09 -10.19 16 18 C 0.01 0.18 6.70 -84.52 -0.57 -0.39 16 19 C -0.23 -2.49 10.62 29.65 0.31 -2.17 16 20 S 0.24 1.94 22.74 -107.50 -2.45 -0.50 16 21 C 0.02 0.15 6.35 -13.62 -0.09 0.06 16 22 C 0.16 1.14 3.96 -26.86 -0.11 1.04 16 23 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -0.68 6.56 -24.48 -0.16 -0.85 16 25 C -0.15 -0.47 7.02 -24.78 -0.17 -0.64 16 26 C 0.05 0.21 7.79 37.88 0.30 0.51 16 27 O -0.37 -2.85 10.87 -35.23 -0.38 -3.23 16 28 N -0.43 -5.05 10.12 -8.51 -0.09 -5.13 16 29 C -0.18 -3.16 7.68 -25.92 -0.20 -3.36 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.36 8.66 5.76 -40.82 -0.24 8.42 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 34 H 0.41 5.02 8.25 -40.82 -0.34 4.69 16 35 H 0.19 1.91 8.03 -52.48 -0.42 1.49 16 36 H 0.08 0.37 8.05 -51.93 -0.42 -0.04 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -34.78 373.05 -9.56 -44.34 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.04 Total: 9.54 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.81 Total: -1.55 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.13 Total: -61.92 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.30 Total: -13.42 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.45 Total: -0.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.78 -9.56 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020152399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.265 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds