Wall clock time and date at job start Tue Mar 31 2020 19:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99948 * 2 1 4 4 H 1.48500 * 109.46727 * 270.00047 * 3 2 1 5 5 H 1.48500 * 109.47243 * 29.99985 * 3 2 1 6 6 H 1.48497 * 109.46835 * 150.00220 * 3 2 1 7 7 C 1.38809 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99703 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00171 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99889 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47406 * 324.99717 * 10 9 7 12 12 C 1.53000 * 109.47400 * 85.00050 * 10 9 7 13 13 C 1.52991 * 109.47602 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47084 * 299.99697 * 13 12 10 15 15 H 1.09001 * 109.47404 * 300.00240 * 14 13 12 16 16 N 1.46502 * 109.47572 * 179.97438 * 14 13 12 17 17 C 1.34769 * 119.99861 * 84.99901 * 16 14 13 18 18 O 1.21682 * 120.00422 * 0.02562 * 17 16 14 19 19 C 1.46736 * 120.00023 * 180.02562 * 17 16 14 20 20 C 1.34878 * 125.05739 * 180.02562 * 19 17 16 21 21 C 1.38933 * 113.65438 * 180.28828 * 20 19 17 22 22 C 1.47328 * 122.96286 * 179.69749 * 21 20 19 23 23 N 1.34780 * 120.00062 * 180.02562 * 22 21 20 24 24 O 1.21624 * 120.00133 * 359.97438 * 22 21 20 25 25 C 1.36664 * 114.07382 * 359.50149 * 21 20 19 26 26 S 1.70589 * 110.53423 * 0.47915 * 25 21 20 27 27 C 1.52998 * 109.47166 * 59.99831 * 14 13 12 28 28 C 1.52998 * 109.47182 * 204.99683 * 10 9 7 29 29 H 0.97004 * 119.99909 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00215 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46618 * 300.00268 * 12 10 9 32 32 H 1.09004 * 109.47333 * 59.99300 * 12 10 9 33 33 H 1.08997 * 109.47442 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47344 * 59.99311 * 13 12 10 35 35 H 0.96998 * 119.99861 * 265.00387 * 16 14 13 36 36 H 1.08002 * 123.16999 * 0.02562 * 20 19 17 37 37 H 0.96995 * 120.00373 * 359.97438 * 23 22 21 38 38 H 0.97006 * 119.99909 * 179.97438 * 23 22 21 39 39 H 1.08008 * 124.73306 * 180.20250 * 25 21 20 40 40 H 1.09004 * 109.47520 * 60.00033 * 27 14 13 41 41 H 1.09000 * 109.47528 * 180.02562 * 27 14 13 42 42 H 1.09000 * 109.47399 * 59.99747 * 28 10 9 43 43 H 1.09009 * 109.47141 * 300.00319 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5646 -3.2065 0.5891 12 6 4.2588 -2.9751 -1.4371 13 6 5.0243 -4.2998 -1.4372 14 6 6.4113 -4.0873 -0.8272 15 1 6.9585 -3.3514 -1.4164 16 7 7.1442 -5.3559 -0.8267 17 6 7.8272 -5.7399 -1.9232 18 8 7.8356 -5.0328 -2.9135 19 6 8.5608 -7.0107 -1.9230 20 6 9.2759 -7.4926 -2.9600 21 6 9.8701 -8.7221 -2.7039 22 6 10.6915 -9.4376 -3.6958 23 7 11.2397 -10.6287 -3.3837 24 8 10.8742 -8.9539 -4.7967 25 6 9.6288 -9.2074 -1.4493 26 16 8.6380 -8.1310 -0.5718 27 6 6.2647 -3.5831 0.6098 28 6 5.4991 -2.2590 0.6101 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3621 0.0004 31 1 3.2707 -3.1260 -1.8717 32 1 4.8064 -2.2394 -2.0262 33 1 5.1284 -4.6592 -2.4609 34 1 4.4772 -5.0357 -0.8479 35 1 7.1378 -5.9193 -0.0372 36 1 9.3738 -6.9738 -3.9022 37 1 11.0937 -11.0147 -2.5059 38 1 11.7803 -11.0999 -4.0369 39 1 10.0084 -10.1439 -1.0682 40 1 5.7175 -4.3189 1.1991 41 1 7.2528 -3.4313 1.0442 42 1 5.3947 -1.8997 1.6339 43 1 6.0467 -1.5233 0.0210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034797749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:42 Heat of formation + Delta-G solvation = -41.756835 kcal Electronic energy + Delta-G solvation = -25692.120208 eV Core-core repulsion = 21863.464060 eV Total energy + Delta-G solvation = -3828.656148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51626 -39.98400 -38.24277 -37.14984 -35.04315 -34.27243 -33.15799 -31.20920 -30.52396 -30.28170 -27.82446 -26.02854 -24.13136 -22.90101 -22.43600 -21.03400 -20.74545 -19.85541 -19.55007 -19.06749 -17.67786 -17.55496 -17.33300 -16.33862 -15.96326 -15.50747 -15.20124 -15.03317 -14.81856 -14.36197 -14.03630 -13.85493 -13.68885 -13.58961 -13.19366 -13.09953 -12.93940 -12.67057 -12.19871 -12.00338 -11.80643 -11.76082 -11.21354 -10.91504 -10.87324 -10.70341 -10.58270 -10.30043 -10.24879 -10.21297 -10.09343 -9.84751 -9.56372 -9.54978 -9.22543 -9.08765 -8.87359 -7.24643 -5.75259 -3.10515 -0.17091 0.79726 1.16800 1.22258 2.71241 2.77872 3.01439 3.06662 3.39224 3.42627 3.47268 4.16549 4.43339 4.49894 4.61015 4.62757 4.79670 4.92185 5.08392 5.19980 5.44560 5.48105 5.49564 5.52611 5.60123 5.69208 5.73897 5.77290 5.90386 6.06367 6.13744 6.16656 6.23151 6.34415 6.42622 6.48788 6.62801 6.75581 6.89191 7.04988 7.22902 7.72692 7.93092 8.01431 8.44042 9.22888 9.95652 10.15559 11.43109 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032861 B = 0.001953 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.861368 B =14332.737576 C =14598.230243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.181 3.819 11 H 0.055 0.945 12 C -0.132 4.132 13 C -0.125 4.125 14 C 0.145 3.855 15 H 0.091 0.909 16 N -0.720 5.720 17 C 0.588 3.412 18 O -0.519 6.519 19 C -0.264 4.264 20 C -0.014 4.014 21 C -0.162 4.162 22 C 0.582 3.418 23 N -0.850 5.850 24 O -0.532 6.532 25 C -0.205 4.205 26 S 0.251 5.749 27 C -0.119 4.119 28 C -0.124 4.124 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.394 0.606 36 H 0.165 0.835 37 H 0.400 0.600 38 H 0.407 0.593 39 H 0.177 0.823 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.271 -24.321 2.265 34.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.173 4.173 13 C -0.164 4.164 14 C 0.042 3.958 15 H 0.109 0.891 16 N -0.370 5.370 17 C 0.372 3.628 18 O -0.395 6.395 19 C -0.384 4.384 20 C -0.045 4.045 21 C -0.180 4.180 22 C 0.366 3.634 23 N -0.414 5.414 24 O -0.409 6.409 25 C -0.345 4.345 26 S 0.519 5.481 27 C -0.158 4.158 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.183 0.817 37 H 0.228 0.772 38 H 0.239 0.761 39 H 0.194 0.806 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.387 -23.371 2.395 33.150 hybrid contribution 1.340 0.298 -0.886 1.634 sum 24.727 -23.074 1.508 33.854 Atomic orbital electron populations 1.69704 1.05106 1.25773 1.57687 1.24677 0.95233 0.97213 1.02136 0.86548 0.79170 0.85007 0.77793 1.21110 1.21831 1.20328 1.19074 0.80625 0.94652 1.42794 0.89234 1.42786 1.03993 1.02057 1.90294 1.20219 0.90204 0.89150 0.93225 0.92683 1.22190 1.00080 0.94707 1.00357 1.21906 0.94412 0.99334 1.00765 1.21199 0.92805 0.84052 0.97740 0.89076 1.46029 1.51656 1.23929 1.15412 1.16915 0.78485 0.83716 0.83652 1.90879 1.62244 1.53539 1.32879 1.24311 1.11534 1.02461 1.00130 1.20367 0.91730 0.92771 0.99673 1.19050 1.06196 0.97936 0.94806 1.17606 0.78610 0.80773 0.86398 1.43663 1.55559 1.22277 1.19927 1.90884 1.60398 1.66927 1.22668 1.26095 1.04379 1.05593 0.98425 1.83045 1.42372 1.08890 1.13782 1.21740 1.00629 0.98586 0.94810 1.21783 0.96881 0.95759 1.01839 0.93114 0.80686 0.91185 0.92509 0.92039 0.91997 0.77192 0.81709 0.77175 0.76148 0.80576 0.91265 0.91671 0.91188 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.40 4.93 -53.43 -0.26 -17.67 16 10 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -2.29 5.50 -26.74 -0.15 -2.44 16 13 C -0.12 -1.76 5.49 -26.74 -0.15 -1.91 16 14 C 0.15 1.79 2.45 -67.93 -0.17 1.62 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 16 N -0.72 -7.39 5.07 -55.10 -0.28 -7.67 16 17 C 0.59 7.22 7.75 -12.83 -0.10 7.12 16 18 O -0.52 -8.54 16.45 5.20 0.09 -8.46 16 19 C -0.26 -2.52 6.37 -37.34 -0.24 -2.75 16 20 C -0.01 -0.15 9.47 -40.52 -0.38 -0.53 16 21 C -0.16 -1.26 5.82 -106.51 -0.62 -1.88 16 22 C 0.58 5.00 8.06 -12.56 -0.10 4.89 16 23 N -0.85 -3.19 8.84 30.41 0.27 -2.92 16 24 O -0.53 -7.03 17.53 5.26 0.09 -6.94 16 25 C -0.21 -0.91 10.41 30.16 0.31 -0.59 16 26 S 0.25 1.26 22.09 -107.50 -2.37 -1.11 16 27 C -0.12 -1.32 5.39 -26.76 -0.14 -1.46 16 28 C -0.12 -1.79 5.39 -26.76 -0.14 -1.93 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.39 2.88 7.68 -40.82 -0.31 2.57 16 36 H 0.17 1.98 7.95 -52.49 -0.42 1.56 16 37 H 0.40 0.18 7.29 -40.82 -0.30 -0.12 16 38 H 0.41 1.12 8.93 -40.82 -0.36 0.75 16 39 H 0.18 0.08 6.99 -52.48 -0.37 -0.29 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -37.26 369.79 -8.93 -46.20 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.78 Total: 7.76 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.32 Total: -3.64 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.50 Total: -56.85 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.18 Total: -15.40 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.37 Total: -1.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.26 -8.93 -46.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034797749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.439 kcal (2) G-P(sol) polarization free energy of solvation -37.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds