Wall clock time and date at job start Tue Mar 31 2020 19:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48504 * 109.47231 * 240.00378 * 3 2 1 5 5 H 1.48494 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47104 * 120.00645 * 3 2 1 7 7 C 1.38818 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99503 * 196.89918 * 7 2 1 9 9 N 1.36930 * 120.00422 * 16.90159 * 7 2 1 10 10 C 1.47152 * 120.98048 * 26.26448 * 9 7 2 11 11 C 1.53292 * 108.38501 * 129.44436 * 10 9 7 12 12 O 1.42960 * 109.26526 * 52.27685 * 11 10 9 13 13 C 1.42957 * 114.16970 * 297.50044 * 12 11 10 14 14 H 1.08995 * 109.51404 * 302.54884 * 13 12 11 15 15 C 1.53000 * 109.51329 * 182.44665 * 13 12 11 16 16 N 1.46493 * 109.47123 * 65.10319 * 15 13 12 17 17 C 1.34782 * 120.00102 * 180.02562 * 16 15 13 18 18 O 1.21624 * 119.99711 * 359.97438 * 17 16 15 19 19 C 1.47260 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.33566 * 123.14462 * 359.97277 * 19 17 16 21 21 C 1.28647 * 115.76325 * 180.02562 * 20 19 17 22 22 S 1.70768 * 110.56509 * 0.26302 * 21 20 19 23 23 C 1.35206 * 123.14078 * 180.02562 * 19 17 16 24 24 C 1.50703 * 125.58768 * 359.96368 * 23 19 17 25 25 C 1.52991 * 117.50368 * 188.74633 * 24 23 19 26 26 C 1.53002 * 117.49897 * 120.08113 * 24 23 19 27 27 C 1.47151 * 120.98477 * 206.24409 * 9 7 2 28 28 H 0.97001 * 119.99826 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.68100 * 249.16909 * 10 9 7 30 30 H 1.09002 * 109.68490 * 9.67894 * 10 9 7 31 31 H 1.09001 * 109.51482 * 172.22511 * 11 10 9 32 32 H 1.08996 * 109.51236 * 292.37778 * 11 10 9 33 33 H 1.09008 * 109.46893 * 305.09965 * 15 13 12 34 34 H 1.09000 * 109.47132 * 185.10662 * 15 13 12 35 35 H 0.96996 * 120.00247 * 359.97438 * 16 15 13 36 36 H 1.08004 * 124.71302 * 180.02562 * 21 20 19 37 37 H 1.09000 * 115.54335 * 334.42207 * 24 23 19 38 38 H 1.09007 * 117.49477 * 359.97438 * 25 24 23 39 39 H 1.08997 * 117.50112 * 145.02059 * 25 24 23 40 40 H 1.09001 * 117.49575 * 214.97927 * 26 24 23 41 41 H 1.09001 * 117.50115 * 359.97438 * 26 24 23 42 42 H 1.08998 * 109.68226 * 110.83081 * 27 9 7 43 43 H 1.08999 * 109.71144 * 350.29847 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2714 9 7 1.3699 -2.3623 -0.3458 10 6 0.1977 -2.3447 -1.2351 11 6 0.4253 -3.3660 -2.3555 12 8 0.7666 -4.6293 -1.7799 13 6 1.9819 -4.6205 -1.0273 14 1 2.8017 -4.2870 -1.6634 15 6 2.2752 -6.0316 -0.5136 16 7 2.5319 -6.9210 -1.6490 17 6 2.8145 -8.2215 -1.4358 18 8 2.8568 -8.6565 -0.3008 19 6 3.0731 -9.1154 -2.5772 20 7 3.0435 -8.7047 -3.8478 21 6 3.2904 -9.6055 -4.7325 22 16 3.5858 -11.1132 -3.9871 23 6 3.3617 -10.4288 -2.4368 24 6 3.4635 -11.1694 -1.1283 25 6 3.9995 -12.6018 -1.1670 26 6 2.5125 -12.3475 -0.9075 27 6 1.8339 -3.6635 0.1611 28 1 -0.4850 0.8401 0.0004 29 1 -0.6955 -2.6122 -0.6705 30 1 0.0767 -1.3498 -1.6636 31 1 -0.4856 -3.4687 -2.9451 32 1 1.2389 -3.0273 -2.9969 33 1 1.4170 -6.3990 0.0491 34 1 3.1512 -6.0075 0.1345 35 1 2.4978 -6.5742 -2.5542 36 1 3.3048 -9.4329 -5.7985 37 1 3.7189 -10.5596 -0.2617 38 1 4.2782 -13.0088 -2.1391 39 1 4.6074 -12.9347 -0.3257 40 1 2.1428 -12.5130 0.1045 41 1 1.8129 -12.5866 -1.7085 42 1 1.1055 -4.0637 0.8663 43 1 2.7969 -3.5425 0.6572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035508324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:50 Heat of formation + Delta-G solvation = 17.180632 kcal Electronic energy + Delta-G solvation = -26391.534005 eV Core-core repulsion = 22565.433577 eV Total energy + Delta-G solvation = -3826.100428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.73895 -38.94483 -38.20013 -37.54160 -34.89235 -34.25935 -31.59355 -30.90544 -30.51330 -27.75192 -26.54273 -25.10679 -23.22534 -22.90786 -22.64316 -22.29830 -21.52166 -20.12627 -19.38444 -18.39419 -17.23861 -16.79495 -16.15554 -16.05326 -15.62654 -15.44319 -14.99464 -14.79309 -14.49144 -14.39479 -14.17203 -13.96377 -13.71751 -13.22142 -13.03330 -12.71033 -12.43821 -12.32776 -12.29182 -11.95134 -11.54227 -11.39440 -11.11815 -10.97749 -10.83520 -10.72190 -10.39620 -10.28863 -10.15039 -9.98245 -9.87802 -9.64457 -9.63208 -9.21519 -9.05110 -8.85912 -8.54047 -6.75660 -5.84468 -3.28090 0.20413 0.86684 1.29187 1.79680 3.24446 3.25496 3.35208 3.40929 3.42024 3.57974 3.87369 4.15620 4.26857 4.42931 4.46088 4.62517 4.78115 4.91687 5.14716 5.21129 5.24548 5.32944 5.48463 5.51323 5.52338 5.61964 5.70938 5.81401 5.85596 5.93587 6.05891 6.17503 6.30725 6.38340 6.49656 6.54807 6.75892 7.08578 7.11173 7.51967 7.63309 7.70298 7.87736 8.22338 8.33216 9.11084 9.73821 10.30863 11.23667 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.002214 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.662387 B =12642.590143 C =13056.691366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.701 5.701 17 C 0.592 3.408 18 O -0.536 6.536 19 C 0.002 3.998 20 N -0.434 5.434 21 C -0.005 4.005 22 S 0.195 5.805 23 C -0.149 4.149 24 C -0.087 4.087 25 C -0.178 4.178 26 C -0.159 4.159 27 C 0.123 3.877 28 H 0.256 0.744 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.412 0.588 36 H 0.206 0.794 37 H 0.150 0.850 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.030 0.970 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -24.911 -9.439 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.351 5.351 17 C 0.376 3.624 18 O -0.414 6.414 19 C -0.132 4.132 20 N -0.147 5.147 21 C -0.305 4.305 22 S 0.451 5.549 23 C -0.273 4.273 24 C -0.108 4.108 25 C -0.215 4.215 26 C -0.197 4.197 27 C -0.005 4.005 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.222 0.778 37 H 0.167 0.833 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.048 0.952 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.938 -25.541 -9.225 28.028 hybrid contribution 0.259 2.082 0.072 2.099 sum 7.197 -23.460 -9.153 26.190 Atomic orbital electron populations 1.70026 1.05273 1.25784 1.53619 1.25050 0.95353 0.98484 1.00758 0.86313 0.78868 0.83076 0.78183 1.20976 1.21548 1.20789 1.19156 0.92619 0.84495 1.42251 0.91384 1.44055 1.33605 1.00981 1.53117 1.21448 0.89113 0.98319 0.89743 1.23322 0.99035 0.84855 0.96583 1.87797 1.41195 1.32543 1.69275 1.22801 0.87665 0.93711 0.95326 0.92314 1.21483 1.01738 0.87937 0.88223 1.45790 1.69358 1.08366 1.11548 1.16975 0.77208 0.81659 0.86599 1.90738 1.52940 1.75523 1.22238 1.20366 1.08795 0.92513 0.91558 1.66975 1.13878 1.34475 0.99411 1.28338 1.05347 0.92284 1.04513 1.82766 1.62730 1.14248 0.95123 1.24818 1.04925 0.97213 1.00308 1.20730 1.05978 0.89797 0.94262 1.23175 0.97344 0.97422 1.03603 1.23093 0.92715 1.00159 1.03772 1.21437 0.98949 0.87197 0.92897 0.93436 0.95366 0.88764 0.90054 0.94096 0.90427 0.89916 0.75231 0.77794 0.83250 0.88719 0.87555 0.87571 0.88625 0.95193 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.14 55.49 0.62 -25.47 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.52 29.59 -169.99 -5.03 16.49 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -7.00 9.65 -15.06 -0.15 -7.14 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -15.01 3.05 -171.83 -0.52 -15.53 16 10 C 0.14 3.36 5.45 -3.53 -0.02 3.34 16 11 C 0.04 0.79 6.98 37.31 0.26 1.05 16 12 O -0.39 -7.59 10.33 -35.23 -0.36 -7.96 16 13 C 0.06 1.18 2.81 -26.58 -0.07 1.10 16 14 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 15 C 0.13 2.06 5.34 -4.05 -0.02 2.04 16 16 N -0.70 -10.60 5.50 -61.44 -0.34 -10.94 16 17 C 0.59 9.11 7.80 -12.59 -0.10 9.01 16 18 O -0.54 -9.12 14.16 5.26 0.07 -9.05 16 19 C 0.00 0.03 6.70 -84.53 -0.57 -0.54 16 20 N -0.43 -5.21 10.12 -12.36 -0.13 -5.33 16 21 C -0.01 -0.04 12.17 51.43 0.63 0.58 16 22 S 0.20 1.41 21.77 -107.50 -2.34 -0.93 16 23 C -0.15 -1.62 6.04 -35.39 -0.21 -1.84 16 24 C -0.09 -0.89 5.40 -91.77 -0.50 -1.39 16 25 C -0.18 -1.27 10.03 -26.70 -0.27 -1.54 16 26 C -0.16 -1.30 10.24 -26.69 -0.27 -1.57 16 27 C 0.12 2.59 6.02 -3.53 -0.02 2.57 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.48 6.14 -51.93 -0.32 2.16 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.41 6.06 7.99 -40.82 -0.33 5.73 16 36 H 0.21 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.15 1.84 6.16 -51.93 -0.32 1.52 16 38 H 0.09 0.57 7.28 -51.92 -0.38 0.19 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.28 7.96 -51.93 -0.41 0.87 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -32.36 367.78 -9.84 -42.20 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.96 Total: 5.32 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.40 Total: 5.65 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.37 Total: -57.26 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.29 Total: -17.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.34 Total: -0.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.36 -9.84 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035508324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.377 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds