Wall clock time and date at job start Tue Mar 31 2020 19:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47138 * 274.42686 * 3 2 1 5 5 H 1.48503 * 109.47010 * 34.42590 * 3 2 1 6 6 H 1.48492 * 109.47381 * 154.42603 * 3 2 1 7 7 C 1.38816 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99960 * 163.17598 * 7 2 1 9 9 N 1.36939 * 119.99370 * 343.17006 * 7 2 1 10 10 C 1.47146 * 120.98827 * 333.62854 * 9 7 2 11 11 C 1.53291 * 108.38849 * 230.51635 * 10 9 7 12 12 O 1.42957 * 109.26571 * 307.72514 * 11 10 9 13 13 C 1.42959 * 114.17142 * 62.49659 * 12 11 10 14 14 H 1.08999 * 109.50801 * 57.44929 * 13 12 11 15 15 C 1.53003 * 109.51430 * 177.55340 * 13 12 11 16 16 N 1.46506 * 109.46920 * 299.89987 * 15 13 12 17 17 C 1.34776 * 119.99752 * 179.97438 * 16 15 13 18 18 O 1.21638 * 119.99991 * 359.72605 * 17 16 15 19 19 C 1.47260 * 119.99816 * 179.72187 * 17 16 15 20 20 N 1.33561 * 123.14369 * 359.70740 * 19 17 16 21 21 C 1.28649 * 115.76806 * 179.82327 * 20 19 17 22 22 S 1.70774 * 110.55727 * 0.42792 * 21 20 19 23 23 C 1.35211 * 123.13997 * 179.97438 * 19 17 16 24 24 C 1.50699 * 125.58474 * 359.93444 * 23 19 17 25 25 C 1.53007 * 117.49675 * 188.74306 * 24 23 19 26 26 C 1.52999 * 117.49579 * 120.08418 * 24 23 19 27 27 C 1.47156 * 120.97821 * 153.61503 * 9 7 2 28 28 H 0.96994 * 120.00579 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.68389 * 350.24533 * 10 9 7 30 30 H 1.09002 * 109.67757 * 110.75261 * 10 9 7 31 31 H 1.09000 * 109.51545 * 67.62542 * 11 10 9 32 32 H 1.09003 * 109.51265 * 187.72436 * 11 10 9 33 33 H 1.09001 * 109.46796 * 179.89871 * 15 13 12 34 34 H 1.08996 * 109.47106 * 59.89833 * 15 13 12 35 35 H 0.96995 * 119.99784 * 359.72402 * 16 15 13 36 36 H 1.07998 * 124.72252 * 180.18729 * 21 20 19 37 37 H 1.08999 * 115.55179 * 334.40948 * 24 23 19 38 38 H 1.09006 * 117.49637 * 359.97438 * 25 24 23 39 39 H 1.08997 * 117.49593 * 145.02099 * 25 24 23 40 40 H 1.09007 * 117.49561 * 214.97258 * 26 24 23 41 41 H 1.08992 * 117.50613 * 359.97438 * 26 24 23 42 42 H 1.09011 * 109.68069 * 9.75752 * 27 9 7 43 43 H 1.09000 * 109.68104 * 249.21301 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4041 2.1004 -1.3959 5 1 1.4975 2.6238 0.7915 6 1 3.5913 1.4150 0.6043 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3444 10 6 0.1977 -2.3457 1.2343 11 6 0.4250 -3.3695 2.3524 12 8 0.7649 -4.6319 1.7741 13 6 1.9800 -4.6226 1.0210 14 1 2.8003 -4.2910 1.6576 15 6 2.2718 -6.0329 0.5043 16 7 2.4103 -6.9496 1.6387 17 6 2.6706 -8.2542 1.4229 18 8 2.7856 -8.6715 0.2862 19 6 2.8159 -9.1745 2.5634 20 7 2.7078 -8.7832 3.8358 21 6 2.8567 -9.7063 4.7193 22 16 3.1710 -11.2084 3.9701 23 6 3.0763 -10.4935 2.4203 24 6 3.2536 -11.2152 1.1093 25 6 3.3391 -12.7424 1.1494 26 6 4.5929 -11.9124 0.8622 27 6 1.8323 -3.6631 -0.1653 28 1 -0.4851 0.8399 -0.0004 29 1 0.0782 -1.3517 1.6653 30 1 -0.6960 -2.6106 0.6693 31 1 1.2391 -3.0329 2.9943 32 1 -0.4856 -3.4719 2.9428 33 1 3.1974 -6.0246 -0.0713 34 1 1.4511 -6.3637 -0.1321 35 1 2.3182 -6.6168 2.5452 36 1 2.7957 -9.5521 5.7865 37 1 2.7567 -10.7614 0.2518 38 1 3.2676 -13.2249 2.1242 39 1 2.8989 -13.2931 0.3182 40 1 4.9770 -11.9177 -0.1580 41 1 5.3459 -11.8489 1.6476 42 1 2.7954 -3.5414 -0.6612 43 1 1.1033 -4.0612 -0.8711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035508325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:54 Heat of formation + Delta-G solvation = 17.180302 kcal Electronic energy + Delta-G solvation = -26400.443703 eV Core-core repulsion = 22574.343261 eV Total energy + Delta-G solvation = -3826.100442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73311 -38.94418 -38.19523 -37.54004 -34.88798 -34.24947 -31.59740 -30.90278 -30.51124 -27.75413 -26.54395 -25.10501 -23.23208 -22.90537 -22.63985 -22.29538 -21.51183 -20.10480 -19.39697 -18.39123 -17.23777 -16.80017 -16.11634 -16.05774 -15.73971 -15.29005 -15.01851 -14.84181 -14.48846 -14.39949 -14.12368 -13.98727 -13.71733 -13.22861 -13.03547 -12.71385 -12.43753 -12.32449 -12.28281 -11.95359 -11.53897 -11.39330 -11.12518 -10.97512 -10.85048 -10.69741 -10.39274 -10.28679 -10.14636 -9.98384 -9.88246 -9.63966 -9.62487 -9.21113 -9.05329 -8.84883 -8.54523 -6.75459 -5.84764 -3.28321 0.20812 0.87059 1.29594 1.80237 3.21948 3.29212 3.33865 3.41069 3.43376 3.57682 3.87720 4.15534 4.26987 4.42776 4.46163 4.62491 4.78786 4.92150 5.15131 5.21359 5.24444 5.32921 5.48100 5.50267 5.52251 5.62395 5.70705 5.81873 5.85993 5.93645 6.06165 6.17460 6.31079 6.38269 6.49591 6.55017 6.75770 7.09036 7.11162 7.51868 7.64577 7.70595 7.87278 8.23229 8.33042 9.10941 9.73717 10.30732 11.23434 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.002222 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.107433 B =12598.187658 C =13106.960213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.140 3.860 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.699 5.699 17 C 0.592 3.408 18 O -0.537 6.537 19 C 0.002 3.998 20 N -0.433 5.433 21 C -0.005 4.005 22 S 0.195 5.805 23 C -0.149 4.149 24 C -0.087 4.087 25 C -0.178 4.178 26 C -0.159 4.159 27 C 0.122 3.878 28 H 0.255 0.745 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.205 0.795 37 H 0.150 0.850 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 -24.994 9.439 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.350 5.350 17 C 0.375 3.625 18 O -0.415 6.415 19 C -0.132 4.132 20 N -0.147 5.147 21 C -0.305 4.305 22 S 0.451 5.549 23 C -0.273 4.273 24 C -0.107 4.107 25 C -0.215 4.215 26 C -0.197 4.197 27 C -0.005 4.005 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.222 0.778 37 H 0.168 0.832 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.684 -25.625 9.234 28.046 hybrid contribution 0.268 2.096 -0.087 2.114 sum 6.952 -23.529 9.147 26.184 Atomic orbital electron populations 1.70033 1.05283 1.25647 1.53731 1.25052 0.95347 0.98491 1.00785 0.86243 0.79149 0.83466 0.77702 1.21347 1.21477 1.20386 1.19194 0.92597 0.84460 1.42167 0.91357 1.44066 1.33656 1.01016 1.53037 1.21441 0.89126 0.98273 0.89767 1.23318 0.99052 0.84865 0.96540 1.87788 1.41231 1.32618 1.69160 1.22806 0.87667 0.93721 0.95317 0.92317 1.21495 1.02168 0.87336 0.88360 1.45762 1.70255 1.07414 1.11525 1.16980 0.77129 0.81752 0.86613 1.90741 1.52083 1.76591 1.22088 1.20366 1.08932 0.92391 0.91513 1.66973 1.13946 1.34370 0.99427 1.28340 1.05668 0.91943 1.04522 1.82764 1.63238 1.13865 0.95033 1.24816 1.05153 0.97009 1.00303 1.20731 1.02997 0.92820 0.94197 1.23178 1.02357 0.92433 1.03582 1.23088 0.90598 1.02422 1.03637 1.21444 0.98953 0.87209 0.92898 0.93505 0.88797 0.95362 0.94096 0.90045 0.89976 0.90477 0.75146 0.77796 0.83244 0.88713 0.87548 0.87590 0.88649 0.91749 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 11.15 55.49 0.62 -25.46 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.97 9.65 -15.06 -0.15 -7.11 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -15.00 3.05 -171.83 -0.52 -15.52 16 10 C 0.14 3.36 5.44 -3.54 -0.02 3.34 16 11 C 0.04 0.79 6.98 37.31 0.26 1.05 16 12 O -0.39 -7.56 10.14 -35.23 -0.36 -7.91 16 13 C 0.06 1.17 2.86 -26.58 -0.08 1.10 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.13 2.06 5.37 -4.04 -0.02 2.04 16 16 N -0.70 -10.62 5.45 -61.43 -0.33 -10.96 16 17 C 0.59 9.13 7.80 -12.59 -0.10 9.03 16 18 O -0.54 -9.14 14.16 5.24 0.07 -9.07 16 19 C 0.00 0.03 6.70 -84.53 -0.57 -0.54 16 20 N -0.43 -5.23 10.12 -12.36 -0.13 -5.35 16 21 C -0.01 -0.04 12.17 51.43 0.63 0.58 16 22 S 0.19 1.41 21.77 -107.50 -2.34 -0.93 16 23 C -0.15 -1.63 6.04 -35.39 -0.21 -1.84 16 24 C -0.09 -0.89 5.40 -91.77 -0.50 -1.39 16 25 C -0.18 -1.28 10.04 -26.69 -0.27 -1.55 16 26 C -0.16 -1.28 10.24 -26.69 -0.27 -1.55 16 27 C 0.12 2.58 6.02 -3.53 -0.02 2.56 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.41 6.12 7.87 -40.82 -0.32 5.80 16 36 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 1.86 6.17 -51.93 -0.32 1.54 16 38 H 0.09 0.58 7.28 -51.93 -0.38 0.20 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.78 8.14 -51.92 -0.42 0.35 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.28 7.96 -51.92 -0.41 0.87 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -32.36 367.50 -9.83 -42.19 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.95 Total: 5.32 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.40 Total: 5.69 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.37 Total: -57.30 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.28 Total: -16.98 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.34 Total: -0.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.36 -9.83 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035508325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.370 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds