Wall clock time and date at job start Tue Mar 31 2020 19:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47062 * 299.99663 * 3 2 1 6 6 H 1.48502 * 109.46933 * 60.00032 * 3 2 1 7 7 C 1.38814 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00555 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.47813 * 134.58185 * 0.04915 * 9 7 2 11 11 C 1.53943 * 86.15854 * 155.42218 * 10 9 7 12 12 C 1.47575 * 134.49195 * 179.97438 * 9 7 2 13 13 H 1.09003 * 113.77009 * 90.21928 * 12 9 7 14 14 C 1.53000 * 113.77247 * 318.93015 * 12 9 7 15 15 N 1.46499 * 109.46840 * 76.34469 * 14 12 9 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21684 * 119.99938 * 0.02562 * 16 15 14 18 18 C 1.46684 * 119.99726 * 180.02562 * 16 15 14 19 19 C 1.35658 * 126.13271 * 0.03195 * 18 16 15 20 20 N 1.30944 * 114.19209 * 179.97438 * 19 18 16 21 21 C 1.29433 * 117.36687 * 359.97438 * 20 19 18 22 22 C 1.50691 * 124.81088 * 179.97438 * 21 20 19 23 23 H 1.08993 * 110.27827 * 165.65902 * 22 21 20 24 24 C 1.54941 * 110.30956 * 287.85998 * 22 21 20 25 25 C 1.55302 * 100.94498 * 155.35895 * 24 22 21 26 26 C 1.54378 * 102.25050 * 325.86091 * 25 24 22 27 27 O 1.43237 * 107.58862 * 21.35851 * 26 25 24 28 28 S 1.70958 * 110.38402 * 359.72295 * 21 20 19 29 29 H 0.96994 * 119.99761 * 0.02562 * 1 2 3 30 30 H 1.08995 * 113.83786 * 41.09159 * 10 9 7 31 31 H 1.08999 * 113.76757 * 269.74492 * 10 9 7 32 32 H 1.09001 * 113.74395 * 269.16661 * 11 10 9 33 33 H 1.09003 * 113.83758 * 137.87132 * 11 10 9 34 34 H 1.09002 * 109.47398 * 196.34796 * 14 12 9 35 35 H 1.09001 * 109.47194 * 316.34976 * 14 12 9 36 36 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 37 37 H 1.07995 * 122.90680 * 359.97438 * 19 18 16 38 38 H 1.09005 * 111.12225 * 273.27320 * 24 22 21 39 39 H 1.08997 * 111.12793 * 37.43634 * 24 22 21 40 40 H 1.09005 * 110.84969 * 207.67723 * 25 24 22 41 41 H 1.08994 * 111.02812 * 84.13366 * 25 24 22 42 42 H 1.09004 * 109.83438 * 261.84643 * 26 25 24 43 43 H 1.09005 * 109.90941 * 140.91490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1050 -2.7602 -0.0008 11 6 0.3472 -4.0865 -0.6383 12 6 1.7201 -3.8101 0.0005 13 1 1.8339 -4.2345 0.9981 14 6 2.9022 -4.1222 -0.9194 15 7 4.1448 -3.6720 -0.2874 16 6 5.3229 -3.8437 -0.9193 17 8 5.3542 -4.3723 -2.0148 18 6 6.5671 -3.3934 -0.2862 19 6 6.6764 -2.7931 0.9253 20 7 7.9039 -2.4880 1.2642 21 6 8.8442 -2.7872 0.4267 22 6 10.3099 -2.5130 0.6447 23 1 10.9099 -3.0751 -0.0708 24 6 10.5979 -0.9960 0.5171 25 6 11.8885 -0.8680 1.3715 26 6 11.6545 -1.9191 2.4777 27 8 10.6864 -2.8545 1.9883 28 16 8.1887 -3.5440 -0.9591 29 1 -0.4849 0.8400 -0.0004 30 1 -0.7197 -2.1444 -0.6572 31 1 -0.5301 -2.8745 0.9963 32 1 0.3589 -4.0681 -1.7281 33 1 -0.1567 -4.9642 -0.2335 34 1 2.9524 -5.1968 -1.0948 35 1 2.7697 -3.6048 -1.8695 36 1 4.1198 -3.2503 0.5858 37 1 5.8248 -2.5847 1.5559 38 1 10.7844 -0.7174 -0.5201 39 1 9.7861 -0.4049 0.9409 40 1 11.9739 0.1315 1.7981 41 1 12.7727 -1.1138 0.7836 42 1 11.2766 -1.4321 3.3767 43 1 12.5877 -2.4360 2.7019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038789331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:06 Heat of formation + Delta-G solvation = 22.543630 kcal Electronic energy + Delta-G solvation = -26257.344034 eV Core-core repulsion = 22431.476163 eV Total energy + Delta-G solvation = -3825.867871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43418 -39.62371 -38.78363 -37.85949 -34.19627 -32.63287 -32.25570 -31.83718 -29.59478 -27.98587 -27.30995 -25.71888 -23.40416 -23.12530 -22.43744 -22.06640 -21.29093 -19.68041 -19.05046 -18.55667 -17.49845 -16.81341 -16.58065 -16.12316 -15.57059 -15.44564 -15.16159 -14.86703 -14.66711 -14.21536 -14.15566 -13.74490 -13.71127 -13.54699 -13.26561 -12.97713 -12.22023 -12.07606 -11.94381 -11.77111 -11.69496 -11.46804 -11.30927 -11.16031 -11.05335 -10.77312 -10.59129 -10.35325 -10.04429 -9.94747 -9.77826 -9.62507 -9.55547 -9.42351 -9.08830 -8.83698 -8.67186 -6.93178 -5.80069 -3.12663 0.11116 0.96485 1.51324 2.37551 3.28438 3.35528 3.40866 3.43197 3.43500 3.53234 3.74525 4.14073 4.39737 4.40467 4.46775 4.65679 4.80075 4.85542 4.99608 5.07117 5.19201 5.29153 5.31533 5.35750 5.41644 5.49201 5.57649 5.64862 5.72361 5.86453 5.90496 6.02145 6.26224 6.36444 6.56100 6.57623 6.63437 6.77051 7.21029 7.37015 7.50738 7.55718 7.69915 7.94424 8.33824 9.00218 9.67592 10.55428 11.36751 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.003041 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.263997 B = 9204.189726 C =10670.047827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.051 0.949 14 C 0.125 3.875 15 N -0.697 5.697 16 C 0.590 3.410 17 O -0.545 6.545 18 C -0.280 4.280 19 C 0.091 3.909 20 N -0.452 5.452 21 C 0.025 3.975 22 C 0.161 3.839 23 H 0.095 0.905 24 C -0.144 4.144 25 C -0.154 4.154 26 C 0.051 3.949 27 O -0.360 6.360 28 S 0.235 5.765 29 H 0.253 0.747 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.185 0.815 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.612 -6.296 1.591 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.347 5.347 16 C 0.374 3.626 17 O -0.424 6.424 18 C -0.405 4.405 19 C -0.067 4.067 20 N -0.166 5.166 21 C -0.250 4.250 22 C 0.100 3.900 23 H 0.113 0.887 24 C -0.183 4.183 25 C -0.191 4.191 26 C -0.026 4.026 27 O -0.279 6.279 28 S 0.493 5.507 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.239 0.761 37 H 0.202 0.798 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.174 -6.660 0.475 22.201 hybrid contribution -0.333 1.661 1.149 2.047 sum 20.840 -4.999 1.624 21.493 Atomic orbital electron populations 1.69823 1.04960 1.25184 1.56537 1.24750 0.95608 0.97398 1.02486 0.86145 0.78774 0.84122 0.77326 1.20545 1.21692 1.21717 1.18964 0.90101 0.81892 1.43806 0.90369 1.46125 1.02326 0.98502 1.86010 1.22234 0.87877 0.89539 0.96982 1.23759 0.95996 0.99026 1.00615 1.22518 0.92272 0.87795 0.95699 0.93168 1.21866 0.81816 0.98503 0.97810 1.45739 1.05790 1.60608 1.22573 1.16669 0.82097 0.79118 0.84747 1.90815 1.87090 1.44646 1.19888 1.25939 0.99175 1.13910 1.01482 1.22300 0.94851 0.95926 0.93657 1.66014 0.99202 1.19712 1.31692 1.27332 1.00007 1.02030 0.95627 1.21352 0.85965 0.96143 0.86585 0.88722 1.23336 0.98622 0.94407 1.01974 1.23126 0.98012 1.00724 0.97273 1.23177 0.92124 0.90147 0.97170 1.88529 1.60606 1.51095 1.27682 1.83865 0.96389 1.51450 1.19019 0.93701 0.90820 0.95460 0.90450 0.92682 0.91776 0.90637 0.76079 0.79848 0.89115 0.89123 0.89482 0.90155 0.90885 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 11.40 55.49 0.63 -26.08 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.22 -5.82 10.51 -15.06 -0.16 -5.98 16 8 H 0.08 1.99 7.49 -52.49 -0.39 1.59 16 9 N -0.60 -14.42 3.59 -169.75 -0.61 -15.03 16 10 C 0.16 3.58 7.52 -2.85 -0.02 3.56 16 11 C -0.15 -2.76 7.86 -25.80 -0.20 -2.96 16 12 C 0.12 2.34 4.32 -66.88 -0.29 2.05 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.20 5.54 -4.04 -0.02 2.18 16 15 N -0.70 -11.82 5.33 -61.62 -0.33 -12.15 16 16 C 0.59 10.30 7.79 -12.85 -0.10 10.20 16 17 O -0.54 -10.95 16.97 5.20 0.09 -10.87 16 18 C -0.28 -4.25 6.48 -37.10 -0.24 -4.49 16 19 C 0.09 1.31 10.93 -18.85 -0.21 1.10 16 20 N -0.45 -6.57 10.49 -11.50 -0.12 -6.69 16 21 C 0.03 0.31 6.33 -13.29 -0.08 0.23 16 22 C 0.16 1.57 3.96 -26.86 -0.11 1.47 16 23 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.14 -1.14 6.56 -24.49 -0.16 -1.30 16 25 C -0.15 -0.92 7.02 -24.79 -0.17 -1.09 16 26 C 0.05 0.39 7.79 37.88 0.30 0.69 16 27 O -0.36 -4.10 11.01 -35.23 -0.39 -4.48 16 28 S 0.23 2.93 23.01 -107.50 -2.47 0.45 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.07 1.85 7.17 -51.93 -0.37 1.48 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.40 6.45 7.05 -40.82 -0.29 6.16 16 37 H 0.18 2.36 7.15 -52.49 -0.38 1.98 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -33.56 373.67 -10.21 -43.77 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.05 Total: 3.10 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.57 Total: 5.39 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.43 Total: -59.95 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.30 Total: -15.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.47 Total: 0.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.56 -10.21 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038789331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.310 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds