Wall clock time and date at job start Tue Mar 31 2020 19:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 14 14 N 1.46497 * 109.46189 * 301.22024 * 12 11 10 15 15 C 1.34777 * 120.00361 * 275.06459 * 14 12 11 16 16 O 1.21629 * 119.99362 * 0.02562 * 15 14 12 17 17 C 1.47259 * 120.00009 * 179.97438 * 15 14 12 18 18 N 1.33557 * 123.14258 * 359.71259 * 17 15 14 19 19 C 1.28655 * 115.76522 * 179.82434 * 18 17 15 20 20 S 1.70774 * 110.55814 * 0.42464 * 19 18 17 21 21 C 1.35209 * 123.13627 * 180.02562 * 17 15 14 22 22 C 1.50694 * 125.59331 * 359.96449 * 21 17 15 23 23 C 1.52996 * 117.50679 * 188.74657 * 22 21 17 24 24 C 1.53000 * 117.49872 * 120.08102 * 22 21 17 25 25 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 26 26 H 1.08999 * 109.49861 * 58.58399 * 25 12 11 27 27 O 1.42899 * 109.52272 * 178.66839 * 25 12 11 28 28 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 29 29 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 31 31 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 32 32 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 33 33 H 1.08998 * 109.38819 * 65.51098 * 11 10 9 34 34 H 0.97006 * 119.99898 * 95.07186 * 14 12 11 35 35 H 1.08001 * 124.71899 * 180.14693 * 19 18 17 36 36 H 1.09006 * 115.54578 * 334.42231 * 22 21 17 37 37 H 1.09000 * 117.49242 * 359.97438 * 23 22 21 38 38 H 1.08996 * 117.50370 * 145.02099 * 23 22 21 39 39 H 1.09002 * 117.49839 * 214.97921 * 24 22 21 40 40 H 1.08998 * 117.50182 * 359.97438 * 24 22 21 41 41 H 0.96700 * 114.00229 * 179.85787 * 27 25 12 42 42 H 1.09004 * 109.58525 * 246.16048 * 28 9 7 43 43 H 1.08995 * 109.58430 * 6.43945 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 0.9832 -5.3888 2.6752 14 7 -0.3098 -5.1576 1.0402 15 6 -1.3531 -5.7794 1.6246 16 8 -1.3611 -5.9527 2.8284 17 6 -2.4838 -6.2478 0.8056 18 7 -2.5431 -6.0849 -0.5186 19 6 -3.5952 -6.5523 -1.0930 20 16 -4.6432 -7.2568 0.0566 21 6 -3.5616 -6.8777 1.3250 22 6 -3.7745 -7.1941 2.7829 23 6 -4.9596 -8.0912 3.1455 24 6 -5.0067 -6.5945 3.4633 25 6 2.0734 -4.6099 0.9881 26 1 2.9048 -4.2393 1.5876 27 8 2.3906 -5.9089 0.4841 28 6 1.8216 -3.6548 -0.1828 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3293 1.6671 31 1 -0.6750 -2.6418 0.7418 32 1 -0.3892 -3.3692 3.0579 33 1 1.3399 -2.9480 3.0083 34 1 -0.3036 -5.0191 0.0801 35 1 -3.7906 -6.5018 -2.1540 36 1 -2.8677 -7.2922 3.3799 37 1 -5.5856 -8.4522 2.3295 38 1 -4.8327 -8.7793 3.9813 39 1 -4.9109 -6.2987 4.5080 40 1 -5.6632 -5.9708 2.8565 41 1 3.1780 -5.9317 -0.0768 42 1 1.0518 -4.0695 -0.8336 43 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090570921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:11 Heat of formation + Delta-G solvation = 12.585033 kcal Electronic energy + Delta-G solvation = -27624.827683 eV Core-core repulsion = 23798.527975 eV Total energy + Delta-G solvation = -3826.299708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.55164 -39.09232 -37.60922 -37.28733 -35.40094 -33.98999 -31.71773 -30.62441 -30.03827 -28.60415 -26.21121 -25.15226 -22.98432 -22.57573 -22.21257 -22.10479 -21.65530 -19.79699 -18.74119 -18.12293 -17.19197 -16.80388 -16.39282 -15.93108 -15.45914 -14.97495 -14.89471 -14.69704 -14.29849 -14.17892 -14.01671 -13.81440 -13.52920 -13.16330 -12.67146 -12.28075 -12.24157 -12.08335 -11.92263 -11.77786 -11.63050 -11.19166 -11.15449 -10.85933 -10.79392 -10.59676 -10.38902 -10.17659 -9.92092 -9.88023 -9.79430 -9.51734 -9.41552 -9.39428 -8.93719 -8.52497 -8.45576 -6.74141 -5.83588 -3.27776 0.44576 1.10380 1.52177 2.08344 3.35574 3.41912 3.42579 3.53438 3.56376 3.79085 4.12874 4.36659 4.40415 4.55345 4.65231 4.81063 5.03427 5.13920 5.31083 5.34908 5.39101 5.45072 5.49090 5.61535 5.66996 5.74290 5.85733 5.87894 5.99816 6.08645 6.11900 6.31188 6.49281 6.57088 6.70664 6.75093 6.98056 7.31637 7.37008 7.62944 7.73711 7.95930 7.98343 8.38545 8.56174 9.14303 9.76884 10.32709 11.24490 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.003280 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.050554 B = 8535.174564 C = 8888.663252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.153 4.153 12 C 0.165 3.835 13 H 0.080 0.920 14 N -0.684 5.684 15 C 0.594 3.406 16 O -0.543 6.543 17 C 0.008 3.992 18 N -0.430 5.430 19 C -0.004 4.004 20 S 0.185 5.815 21 C -0.151 4.151 22 C -0.083 4.083 23 C -0.179 4.179 24 C -0.160 4.160 25 C 0.076 3.924 26 H 0.067 0.933 27 O -0.570 6.570 28 C 0.117 3.883 29 H 0.255 0.745 30 H 0.089 0.911 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.205 0.795 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.373 0.627 42 H 0.024 0.976 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -16.188 1.509 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.046 3.954 11 C -0.193 4.193 12 C 0.060 3.940 13 H 0.098 0.902 14 N -0.334 5.334 15 C 0.377 3.623 16 O -0.422 6.422 17 C -0.126 4.126 18 N -0.143 5.143 19 C -0.303 4.303 20 S 0.441 5.559 21 C -0.275 4.275 22 C -0.104 4.104 23 C -0.217 4.217 24 C -0.198 4.198 25 C 0.015 3.985 26 H 0.085 0.915 27 O -0.375 6.375 28 C -0.010 4.010 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.249 0.751 35 H 0.221 0.779 36 H 0.167 0.833 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.220 0.780 42 H 0.042 0.958 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.121 -16.490 2.212 19.475 hybrid contribution 1.659 1.556 -0.591 2.350 sum -8.462 -14.934 1.621 17.242 Atomic orbital electron populations 1.70032 1.05285 1.25751 1.53124 1.25046 0.95268 0.98459 1.00532 0.86354 0.78913 0.83236 0.78140 1.21599 1.20950 1.20862 1.19119 0.92630 0.84678 1.42489 0.91623 1.43976 1.35850 1.00857 1.50342 1.20698 0.88598 0.98316 0.87774 1.22522 1.01529 0.94733 1.00504 1.20891 0.83757 0.96484 0.92834 0.90207 1.45776 1.18663 1.56607 1.12335 1.16931 0.81174 0.77856 0.86295 1.90697 1.79516 1.58402 1.13602 1.20419 0.97828 1.05104 0.89289 1.66980 1.22508 1.17221 1.07623 1.28337 0.93975 1.02693 1.05327 1.82655 1.22800 1.53813 0.96592 1.24769 0.98089 1.03869 1.00779 1.20695 0.95904 1.04746 0.89034 1.23163 1.00776 0.93907 1.03860 1.23079 0.99109 0.95541 1.02029 1.22735 0.95993 0.83038 0.96709 0.91509 1.86489 1.50417 1.30221 1.70326 1.21543 0.98544 0.87715 0.93202 0.93486 0.89263 0.96054 0.91788 0.91409 0.75143 0.77893 0.83325 0.88778 0.87722 0.87682 0.88619 0.78017 0.95784 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.19 55.49 0.62 -25.23 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.96 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.32 3.00 -172.58 -0.52 -14.83 16 10 C 0.17 4.13 5.03 -3.94 -0.02 4.11 16 11 C -0.15 -3.09 5.75 -26.83 -0.15 -3.25 16 12 C 0.16 3.11 2.47 -67.89 -0.17 2.94 16 13 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 14 N -0.68 -12.89 4.16 -54.89 -0.23 -13.12 16 15 C 0.59 11.13 7.76 -12.59 -0.10 11.03 16 16 O -0.54 -10.77 13.82 5.25 0.07 -10.69 16 17 C 0.01 0.13 6.70 -84.53 -0.57 -0.44 16 18 N -0.43 -6.65 10.12 -12.36 -0.13 -6.78 16 19 C 0.00 -0.04 12.17 51.43 0.63 0.59 16 20 S 0.19 1.81 21.77 -107.50 -2.34 -0.53 16 21 C -0.15 -2.06 6.04 -35.39 -0.21 -2.28 16 22 C -0.08 -1.05 5.40 -91.78 -0.50 -1.54 16 23 C -0.18 -1.62 10.04 -26.69 -0.27 -1.89 16 24 C -0.16 -1.65 10.24 -26.69 -0.27 -1.92 16 25 C 0.08 1.35 3.36 -26.61 -0.09 1.26 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 O -0.57 -9.04 13.21 -35.23 -0.47 -9.51 16 28 C 0.12 2.38 5.85 -3.71 -0.02 2.36 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 31 H 0.02 0.55 7.74 -51.93 -0.40 0.15 16 32 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.41 7.96 6.39 -40.82 -0.26 7.70 16 35 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.15 2.17 6.17 -51.93 -0.32 1.85 16 37 H 0.09 0.75 7.28 -51.93 -0.38 0.37 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.37 4.28 9.08 45.56 0.41 4.69 16 42 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.34 361.42 -9.46 -41.80 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.92 Total: 13.14 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.97 Total: 3.95 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.25 Total: -59.96 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.39 Total: -20.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.34 Total: -0.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.34 -9.46 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090570921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.383 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds