Wall clock time and date at job start Tue Mar 31 2020 20:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31315 * 120.17445 * 2 1 4 4 C 1.33229 * 121.29051 * 179.91682 * 3 2 1 5 5 C 1.35491 * 121.15473 * 359.54620 * 4 3 2 6 6 N 1.35903 * 119.69515 * 0.02562 * 5 4 3 7 7 C 1.36713 * 134.60159 * 180.02562 * 6 5 4 8 8 C 1.46602 * 126.41094 * 359.97438 * 7 6 5 9 9 O 1.21747 * 119.99594 * 4.74063 * 8 7 6 10 10 N 1.34777 * 120.00149 * 184.46230 * 8 7 6 11 11 C 1.36809 * 119.99628 * 355.13963 * 10 8 7 12 12 H 1.07998 * 120.00295 * 316.92619 * 11 10 8 13 13 C 1.39045 * 119.99805 * 136.92856 * 11 10 8 14 14 N 1.31368 * 119.99923 * 353.47525 * 13 11 10 15 15 Si 1.86796 * 120.00031 * 173.47073 * 13 11 10 16 16 H 1.48507 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47398 * 119.99912 * 15 13 11 18 18 H 1.48501 * 109.47135 * 240.00444 * 15 13 11 19 19 C 1.46495 * 119.99926 * 175.14210 * 10 8 7 20 20 C 1.50698 * 109.47332 * 90.00209 * 19 10 8 21 21 C 1.38234 * 119.99815 * 269.72503 * 20 19 10 22 22 C 1.38239 * 120.00119 * 179.76902 * 21 20 19 23 23 C 1.38233 * 119.99436 * 0.50251 * 22 21 20 24 24 C 1.38234 * 120.00416 * 359.75024 * 23 22 21 25 25 C 1.38230 * 119.99633 * 359.97438 * 24 23 22 26 26 N 1.32500 * 107.17687 * 179.73202 * 7 6 5 27 27 N 1.28734 * 109.96321 * 0.26270 * 26 7 6 28 28 C 1.32782 * 109.69607 * 359.97438 * 27 26 7 29 29 H 1.09008 * 109.46804 * 270.75993 * 1 2 3 30 30 H 1.08997 * 109.47394 * 30.76146 * 1 2 3 31 31 H 1.09004 * 109.46893 * 150.76782 * 1 2 3 32 32 H 1.07993 * 119.42273 * 179.56975 * 4 3 2 33 33 H 1.08004 * 120.15273 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00292 * 185.00285 * 14 13 11 35 35 H 1.09009 * 109.46691 * 209.99833 * 19 10 8 36 36 H 1.09001 * 109.47059 * 329.99287 * 19 10 8 37 37 H 1.08003 * 119.99688 * 359.97438 * 21 20 19 38 38 H 1.08001 * 120.00065 * 180.23118 * 22 21 20 39 39 H 1.08005 * 119.99468 * 179.72807 * 23 22 21 40 40 H 1.08001 * 119.99996 * 179.97438 * 24 23 22 41 41 H 1.08001 * 119.99760 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1670 1.1352 0.0000 4 6 3.4990 1.1612 0.0017 5 6 4.2224 0.0156 0.0126 6 7 3.5837 -1.1839 0.0215 7 6 3.9917 -2.4887 0.0337 8 6 5.3774 -2.9671 0.0403 9 8 6.2955 -2.1717 0.1221 10 7 5.6349 -4.2877 -0.0385 11 6 4.6044 -5.1875 -0.0244 12 1 3.7857 -5.0601 0.6684 13 6 4.6111 -6.2660 -0.9019 14 7 5.5374 -6.3523 -1.8295 15 14 3.3031 -7.5922 -0.7618 16 1 2.3823 -7.2633 0.3559 17 1 2.5346 -7.6656 -2.0303 18 1 3.9522 -8.9019 -0.4998 19 6 7.0181 -4.7596 -0.1392 20 6 7.5720 -4.9905 1.2431 21 6 8.2197 -3.9662 1.9081 22 6 8.7237 -4.1765 3.1780 23 6 8.5891 -5.4142 3.7787 24 6 7.9461 -6.4401 3.1116 25 6 7.4371 -6.2280 1.8440 26 7 2.9003 -3.2399 0.0437 27 7 1.8522 -2.4925 0.0330 28 6 2.2137 -1.2150 0.0161 29 1 -0.3633 0.0136 1.0277 30 1 -0.3634 0.8830 -0.5256 31 1 -0.3633 -0.8968 -0.5019 32 1 4.0111 2.1119 -0.0055 33 1 5.3017 0.0555 0.0142 34 1 5.5006 -7.0646 -2.4869 35 1 7.0434 -5.6932 -0.7014 36 1 7.6212 -4.0103 -0.6520 37 1 8.3290 -3.0006 1.4368 38 1 9.2264 -3.3751 3.6991 39 1 8.9867 -5.5798 4.7691 40 1 7.8413 -7.4072 3.5808 41 1 6.9351 -7.0296 1.3226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156411521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:13 Heat of formation + Delta-G solvation = 127.883019 kcal Electronic energy + Delta-G solvation = -28791.615482 eV Core-core repulsion = 24867.164269 eV Total energy + Delta-G solvation = -3924.451212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.30231 -39.30907 -38.87885 -37.95372 -35.41196 -34.63765 -32.19258 -32.03422 -31.17126 -30.34024 -29.76494 -28.16015 -26.13914 -25.18671 -23.89822 -23.59088 -22.51059 -21.97679 -20.81366 -19.66319 -18.58136 -17.65744 -17.33823 -16.58820 -16.39392 -15.78361 -15.07817 -14.92790 -14.76334 -14.59522 -14.47078 -14.31430 -14.01778 -13.48057 -13.29944 -12.86970 -12.85831 -12.60215 -12.34558 -12.28419 -12.10194 -11.72802 -11.57238 -11.37943 -11.25465 -11.03160 -10.86095 -10.54409 -10.39709 -10.29687 -10.21845 -10.03272 -9.45337 -9.32824 -9.01909 -8.38311 -8.20800 -8.08889 -7.70803 -6.54472 -4.27726 0.51072 1.03928 1.84652 1.94555 2.34039 2.62074 3.12177 3.20398 3.28600 3.47772 3.94910 4.01110 4.04196 4.16718 4.22363 4.35261 4.58375 4.86854 4.96304 5.15875 5.36834 5.37617 5.42339 5.44021 5.52256 5.54442 5.66532 5.78761 5.80441 5.97537 6.05340 6.11459 6.12563 6.28531 6.39427 6.53782 6.65754 6.86698 6.97995 6.98910 7.05255 7.33841 7.44682 7.55167 7.63029 7.64452 8.27322 8.69155 8.89119 9.10479 9.52393 10.45254 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.004627 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.371652 B = 6050.512553 C = 7808.803656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.214 3.786 3 N -0.459 5.459 4 C 0.024 3.976 5 C 0.044 3.956 6 N -0.354 5.354 7 C 0.151 3.849 8 C 0.530 3.470 9 O -0.605 6.605 10 N -0.385 5.385 11 C -0.311 4.311 12 H 0.115 0.885 13 C 0.049 3.951 14 N -0.863 5.863 15 Si 0.924 3.076 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.140 3.860 20 C -0.082 4.082 21 C -0.102 4.102 22 C -0.134 4.134 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.093 4.093 26 N -0.175 5.175 27 N -0.270 5.270 28 C 0.122 3.878 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.275 0.725 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 6.643 4.445 8.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 N -0.173 5.173 4 C -0.116 4.116 5 C -0.083 4.083 6 N -0.034 5.034 7 C -0.110 4.110 8 C 0.317 3.683 9 O -0.492 6.492 10 N -0.099 5.099 11 C -0.441 4.441 12 H 0.132 0.868 13 C -0.157 4.157 14 N -0.500 5.500 15 Si 0.750 3.250 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.205 1.205 19 C 0.018 3.982 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.111 4.111 26 N -0.021 5.021 27 N -0.122 5.122 28 C -0.127 4.127 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.198 0.802 33 H 0.203 0.797 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.390 6.330 4.365 7.814 hybrid contribution 0.755 -0.286 -0.044 0.808 sum -0.635 6.044 4.321 7.457 Atomic orbital electron populations 1.20684 0.86051 1.04472 1.03993 1.21165 0.97627 0.83161 0.93093 1.67955 1.09153 1.27414 1.12782 1.22245 0.89248 0.97507 1.02589 1.23005 1.01854 0.82415 1.01004 1.43405 1.08360 1.07117 1.44525 1.24666 0.98808 0.77327 1.10183 1.16432 0.82821 0.83967 0.85064 1.90656 1.44144 1.55018 1.59349 1.43212 1.06266 1.02525 1.57855 1.20129 1.01244 1.03235 1.19456 0.86812 1.25566 0.97175 0.98949 0.94035 1.69609 1.32613 1.33351 1.14471 0.85860 0.80497 0.79372 0.79263 1.18338 1.20315 1.20500 1.20817 0.81484 1.03959 0.91897 1.20502 0.96558 0.93273 0.97969 1.21288 0.97154 0.99060 0.94556 1.21050 1.01428 0.96950 0.95789 1.20996 1.00770 0.93779 0.99454 1.21066 0.99738 0.98745 0.95500 1.21152 0.97830 0.97366 0.94767 1.75530 0.93162 1.22494 1.10868 1.75181 1.21864 0.96199 1.18959 1.23227 0.82029 0.98047 1.09447 0.89360 0.89591 0.89217 0.80173 0.79690 0.91395 0.84937 0.91414 0.85740 0.86984 0.87064 0.86782 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 10.21 36.00 0.37 -0.65 16 2 C 0.21 3.21 6.86 -81.94 -0.56 2.65 16 3 N -0.46 -6.54 10.35 -9.37 -0.10 -6.64 16 4 C 0.02 0.31 11.08 -17.93 -0.20 0.11 16 5 C 0.04 0.70 10.65 -16.73 -0.18 0.52 16 6 N -0.35 -7.00 2.96 -60.58 -0.18 -7.18 16 7 C 0.15 3.48 7.70 -154.08 -1.19 2.29 16 8 C 0.53 12.80 7.59 -12.89 -0.10 12.70 16 9 O -0.60 -14.46 14.55 5.15 0.07 -14.39 16 10 N -0.38 -9.34 2.48 -117.61 -0.29 -9.63 16 11 C -0.31 -7.72 7.73 -15.03 -0.12 -7.84 16 12 H 0.11 2.93 6.23 -52.49 -0.33 2.60 16 13 C 0.05 1.20 5.25 -17.45 -0.09 1.11 16 14 N -0.86 -21.30 10.99 55.50 0.61 -20.69 16 15 Si 0.92 19.54 29.56 -169.99 -5.03 14.52 16 16 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 C 0.14 3.15 5.07 -5.20 -0.03 3.13 16 20 C -0.08 -1.66 5.46 -104.63 -0.57 -2.23 16 21 C -0.10 -1.93 9.57 -39.58 -0.38 -2.31 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.13 -2.16 10.05 -39.59 -0.40 -2.55 16 25 C -0.09 -1.75 9.70 -39.59 -0.38 -2.13 16 26 N -0.17 -4.11 9.13 32.33 0.30 -3.81 16 27 N -0.27 -5.69 12.31 31.11 0.38 -5.31 16 28 C 0.12 2.29 7.62 -156.03 -1.19 1.10 16 29 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.19 2.81 7.10 -52.48 -0.37 2.44 16 34 H 0.28 6.42 8.32 -40.82 -0.34 6.08 16 35 H 0.13 3.12 5.29 -51.92 -0.27 2.85 16 36 H 0.07 1.53 7.44 -51.93 -0.39 1.14 16 37 H 0.12 2.41 7.40 -52.48 -0.39 2.02 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -29.17 354.74 -8.95 -38.13 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.26 Total: 8.79 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -5.81 Total: 0.87 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.72 Total: -53.26 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.07 Total: -14.39 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.17 -8.95 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156411521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.010 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds