Wall clock time and date at job start Tue Mar 31 2020 20:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36768 * 125.79727 * 2 1 4 4 C 1.47258 * 126.94585 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00115 * 359.71201 * 4 3 2 6 6 N 1.34780 * 120.00337 * 179.71182 * 4 3 2 7 7 C 1.46497 * 120.00114 * 180.02562 * 6 4 3 8 8 C 1.53501 * 114.20643 * 155.00293 * 7 6 4 9 9 N 1.47065 * 87.98741 * 87.51773 * 8 7 6 10 10 C 1.34775 * 136.05752 * 207.08848 * 9 8 7 11 11 O 1.21276 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.80998 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47210 * 89.99890 * 18 16 14 20 20 H 1.48504 * 109.47424 * 210.00121 * 18 16 14 21 21 H 1.48502 * 109.46888 * 330.00210 * 18 16 14 22 22 C 1.47067 * 87.88381 * 27.34024 * 9 8 7 23 23 C 1.46688 * 106.11251 * 179.71932 * 3 2 1 24 24 C 1.34483 * 106.33201 * 0.25795 * 23 3 2 25 25 N 1.34654 * 125.80229 * 180.16779 * 2 1 3 26 26 C 1.46500 * 124.85124 * 0.02562 * 25 2 1 27 27 H 1.09008 * 109.46861 * 90.00161 * 1 2 3 28 28 H 1.09002 * 109.46814 * 210.00022 * 1 2 3 29 29 H 1.08995 * 109.47073 * 330.00200 * 1 2 3 30 30 H 0.97005 * 119.99797 * 0.02562 * 6 4 3 31 31 H 1.08999 * 113.28436 * 21.93088 * 7 6 4 32 32 H 1.09001 * 113.46643 * 332.73474 * 8 7 6 33 33 H 1.08996 * 113.46488 * 202.29934 * 8 7 6 34 34 H 1.09001 * 109.47434 * 59.99478 * 12 10 9 35 35 H 1.08999 * 109.47072 * 299.99957 * 12 10 9 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.09010 * 113.46411 * 87.43777 * 22 9 8 38 38 H 1.08997 * 113.47100 * 217.87349 * 22 9 8 39 39 H 1.08003 * 126.83447 * 180.22859 * 23 3 2 40 40 H 1.08007 * 125.56952 * 180.02562 * 24 23 3 41 41 H 1.09005 * 109.46836 * 270.31364 * 26 25 2 42 42 H 1.08997 * 109.47155 * 30.31070 * 26 25 2 43 43 H 1.09002 * 109.46721 * 150.31430 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5055 0.0054 7 6 2.3502 4.9045 0.0055 8 6 3.3724 5.8811 0.6035 9 7 3.9767 5.9859 -0.7331 10 6 5.2006 6.2611 -1.2259 11 8 6.1188 6.5001 -0.4705 12 6 5.4278 6.2731 -2.7156 13 16 7.1594 6.6732 -3.0585 14 6 7.1429 6.6191 -4.8196 15 1 6.2277 6.3879 -5.3442 16 6 8.3048 6.8797 -5.5328 17 7 9.4190 7.1668 -4.8937 18 14 8.2875 6.8217 -7.3999 19 1 7.9537 8.1665 -7.9339 20 1 9.6260 6.4108 -7.8948 21 1 7.2691 5.8415 -7.8552 22 6 2.6564 5.6646 -1.2955 23 6 3.6882 0.6152 0.0069 24 6 3.6095 -0.7273 0.0046 25 7 2.2947 -1.0921 -0.0032 26 6 1.8094 -2.4744 -0.0078 27 1 -0.3633 0.0000 -1.0278 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.7310 3.2915 0.0097 31 1 1.3336 5.0398 0.3747 32 1 4.0297 5.4228 1.3424 33 1 2.9288 6.8131 0.9537 34 1 4.7841 7.0230 -3.1754 35 1 5.1930 5.2914 -3.1268 36 1 10.2311 7.3486 -5.3921 37 1 2.0240 6.5397 -1.4460 38 1 2.7037 5.0219 -2.1746 39 1 4.5890 1.2110 0.0122 40 1 4.4498 -1.4059 0.0087 41 1 1.6834 -2.8186 1.0188 42 1 0.8522 -2.5216 -0.5269 43 1 2.5317 -3.1113 -0.5185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284941421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:42 Heat of formation + Delta-G solvation = 20.128620 kcal Electronic energy + Delta-G solvation = -25748.497294 eV Core-core repulsion = 21922.524701 eV Total energy + Delta-G solvation = -3825.972594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64545 -40.56634 -38.80932 -37.38903 -33.83595 -32.95578 -32.42468 -31.85499 -30.35223 -28.05589 -26.83208 -26.56026 -26.01191 -25.42603 -23.05926 -21.50979 -20.40162 -19.37982 -18.88267 -17.78823 -17.63034 -16.61018 -16.44504 -15.99646 -15.83535 -15.38507 -15.24579 -14.79867 -14.64363 -14.50822 -13.88982 -13.81263 -13.43697 -13.37532 -13.34000 -12.96674 -12.93337 -12.80359 -12.72725 -12.56761 -12.33373 -12.00689 -11.86834 -11.79111 -11.12712 -11.05095 -10.99488 -10.75420 -9.99322 -9.81574 -9.42785 -9.19625 -9.06155 -8.86692 -8.60773 -8.40866 -8.23528 -6.49965 -6.21136 -3.91812 1.51585 2.17393 2.44188 2.78015 3.04691 3.15978 3.22974 3.26065 3.30746 3.38344 3.58718 4.20616 4.23746 4.30672 4.44379 4.62385 4.65699 4.66317 4.87411 4.91914 4.96470 4.98323 5.13451 5.15816 5.28682 5.31836 5.37516 5.47664 5.50037 5.58452 5.61914 5.65482 5.70870 5.90870 5.97171 6.01117 6.16822 6.40056 6.51625 6.76832 6.92827 7.47215 7.60389 7.86649 8.21037 8.36010 8.55074 9.24171 10.86297 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002465 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.049582 B =11355.337777 C =12617.396889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.107 3.893 3 C -0.241 4.241 4 C 0.600 3.400 5 O -0.552 6.552 6 N -0.704 5.704 7 C 0.110 3.890 8 C 0.096 3.904 9 N -0.653 5.653 10 C 0.562 3.438 11 O -0.515 6.515 12 C -0.144 4.144 13 S -0.060 6.060 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.086 3.914 23 C -0.163 4.163 24 C -0.017 4.017 25 N -0.446 5.446 26 C 0.067 3.933 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.406 0.594 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.589 -17.691 11.779 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.010 4.010 3 C -0.250 4.250 4 C 0.390 3.610 5 O -0.432 6.432 6 N -0.355 5.355 7 C 0.003 3.997 8 C -0.028 4.028 9 N -0.393 5.393 10 C 0.352 3.648 11 O -0.389 6.389 12 C -0.295 4.295 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.039 4.039 23 C -0.187 4.187 24 C -0.143 4.143 25 N -0.123 5.123 26 C -0.074 4.074 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.241 0.759 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.700 -17.409 12.785 28.569 hybrid contribution -0.336 -0.395 -2.216 2.276 sum -19.036 -17.804 10.569 28.126 Atomic orbital electron populations 1.20567 0.87073 1.04062 1.03398 1.20311 0.93729 0.85165 1.01818 1.20017 0.93341 0.91704 1.19972 1.17304 0.85053 0.83990 0.74648 1.90717 1.16568 1.84429 1.51496 1.45330 1.10245 1.04385 1.75496 1.22199 0.99608 0.81021 0.96833 1.23288 0.93164 0.98389 0.87934 1.49771 1.07783 1.72513 1.09210 1.19936 0.79772 0.74758 0.90341 1.90716 1.40841 1.47233 1.60081 1.23467 1.07721 1.05037 0.93251 1.85375 0.99567 1.91338 1.07089 1.22855 0.98845 1.55436 0.91112 0.90947 1.24990 0.94567 0.94524 0.99497 1.70016 1.00137 1.44146 1.36008 0.86166 0.77644 0.78550 0.83136 1.20260 1.20741 1.19678 1.23572 0.83102 0.98737 0.98501 1.22085 0.95834 0.93702 1.07105 1.21727 0.85333 0.96342 1.10907 1.43572 1.06097 1.06135 1.56496 1.22101 1.01775 0.80050 1.03504 0.90475 0.92008 0.88001 0.75885 0.85709 0.90017 0.88622 0.89350 0.89357 0.92184 0.88733 0.89975 0.83504 0.81452 0.90672 0.89632 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.26 36.01 0.33 -0.41 16 2 C 0.11 1.06 6.89 -81.88 -0.56 0.49 16 3 C -0.24 -2.76 6.29 -103.35 -0.65 -3.41 16 4 C 0.60 7.43 7.81 -12.59 -0.10 7.33 16 5 O -0.55 -7.85 14.41 5.26 0.08 -7.77 16 6 N -0.70 -7.75 5.39 -54.61 -0.29 -8.04 16 7 C 0.11 1.10 4.61 -67.67 -0.31 0.79 16 8 C 0.10 1.04 8.38 -8.51 -0.07 0.97 16 9 N -0.65 -9.38 3.69 -185.08 -0.68 -10.06 16 10 C 0.56 11.00 8.10 -10.99 -0.09 10.92 16 11 O -0.51 -12.09 16.64 5.56 0.09 -12.00 16 12 C -0.14 -3.04 5.98 36.00 0.22 -2.82 16 13 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 14 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 15 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 18 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.09 0.94 8.25 -8.38 -0.07 0.87 16 23 C -0.16 -1.65 10.56 -37.50 -0.40 -2.05 16 24 C -0.02 -0.15 11.34 -16.83 -0.19 -0.34 16 25 N -0.45 -3.54 3.09 -119.88 -0.37 -3.91 16 26 C 0.07 0.25 10.60 59.85 0.63 0.89 16 27 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.06 0.34 7.59 -51.93 -0.39 -0.06 16 29 H 0.10 0.98 6.47 -51.93 -0.34 0.64 16 30 H 0.41 4.40 7.89 -40.82 -0.32 4.08 16 31 H 0.13 1.14 7.45 -51.93 -0.39 0.76 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 35 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.15 1.34 7.70 -52.48 -0.40 0.93 16 40 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.24 7.51 -51.93 -0.39 -0.15 16 43 H 0.09 0.21 8.13 -51.93 -0.42 -0.22 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -37.92 382.98 -8.97 -46.89 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.00 Total: 1.86 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.06 Total: 0.15 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.61 Total: -47.59 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.17 Total: -19.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.92 -8.97 -46.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284941421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.020 kcal (2) G-P(sol) polarization free energy of solvation -37.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds