Wall clock time and date at job start Tue Mar 31 2020 19:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00304 * 2 1 4 4 H 1.48503 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47530 * 300.00242 * 3 2 1 6 6 H 1.48508 * 109.47285 * 60.00464 * 3 2 1 7 7 C 1.37880 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99810 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.52311 * 300.08006 * 9 7 2 11 11 C 1.53041 * 109.49657 * 180.02562 * 9 7 2 12 12 C 1.53037 * 109.54037 * 178.68098 * 11 9 7 13 13 C 1.53196 * 109.30867 * 61.36555 * 12 11 9 14 14 N 1.46930 * 108.77599 * 305.36474 * 13 12 11 15 15 C 1.34776 * 120.62591 * 233.58743 * 14 13 12 16 16 O 1.21354 * 119.99276 * 187.08708 * 15 14 13 17 17 C 1.49448 * 120.00539 * 7.08345 * 15 14 13 18 18 O 1.21351 * 119.99732 * 6.40432 * 17 15 14 19 19 N 1.34774 * 120.00158 * 186.39568 * 17 15 14 20 20 C 1.46497 * 120.00288 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47629 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.47317 * 180.02562 * 21 20 19 23 23 N 1.29022 * 124.91376 * 90.00446 * 22 21 20 24 24 C 1.31777 * 117.12736 * 179.97438 * 23 22 21 25 25 C 1.33646 * 114.49845 * 359.97438 * 24 23 22 26 26 S 1.70977 * 124.91552 * 269.69668 * 22 21 20 27 27 C 1.46921 * 118.73691 * 53.86373 * 14 13 12 28 28 H 0.97004 * 119.99496 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46234 * 58.66408 * 11 9 7 30 30 H 1.09000 * 109.45079 * 298.70150 * 11 9 7 31 31 H 1.08995 * 109.50105 * 301.41946 * 12 11 9 32 32 H 1.09004 * 109.49960 * 181.31243 * 12 11 9 33 33 H 1.09006 * 109.58679 * 185.57639 * 13 12 11 34 34 H 1.09000 * 109.70793 * 65.22453 * 13 12 11 35 35 H 0.97005 * 119.99700 * 0.02562 * 19 17 15 36 36 H 1.08999 * 109.46785 * 60.00270 * 20 19 17 37 37 H 1.08996 * 109.47285 * 300.00913 * 20 19 17 38 38 H 1.08996 * 109.47329 * 300.00637 * 21 20 19 39 39 H 1.09000 * 109.46556 * 59.99907 * 21 20 19 40 40 H 1.08000 * 122.75499 * 180.02562 * 24 23 22 41 41 H 1.07996 * 126.03789 * 180.02562 * 25 24 23 42 42 H 1.08993 * 109.58899 * 65.92852 * 27 14 13 43 43 H 1.09000 * 109.58469 * 186.35694 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.6231 -2.5573 0.8887 11 6 2.2447 -3.6629 -0.0005 12 6 1.4807 -4.9885 0.0327 13 6 0.6053 -5.1002 -1.2196 14 7 -0.2532 -3.9108 -1.3042 15 6 -1.5895 -4.0359 -1.4267 16 8 -2.2751 -3.0543 -1.6245 17 6 -2.2270 -5.3833 -1.3189 18 8 -1.5592 -6.3472 -1.0064 19 7 -3.5435 -5.5279 -1.5686 20 6 -4.1683 -6.8487 -1.4635 21 6 -5.6575 -6.7365 -1.7959 22 6 -6.3003 -8.0952 -1.6871 23 7 -6.8292 -8.5781 -0.6140 24 6 -7.3505 -9.7859 -0.6920 25 6 -7.2565 -10.3532 -1.8984 26 16 -6.4409 -9.2168 -2.9699 27 6 0.3735 -2.5827 -1.2588 28 1 -0.4849 0.8401 0.0004 29 1 2.8870 -3.5920 0.8773 30 1 2.8557 -3.6184 -0.9020 31 1 0.8504 -5.0231 0.9212 32 1 2.1893 -5.8165 0.0562 33 1 -0.0146 -5.9944 -1.1536 34 1 1.2373 -5.1584 -2.1058 35 1 -4.0772 -4.7574 -1.8186 36 1 -4.0498 -7.2269 -0.4481 37 1 -3.6906 -7.5335 -2.1642 38 1 -6.1355 -6.0517 -1.0955 39 1 -5.7756 -6.3585 -2.8114 40 1 -7.8163 -10.2768 0.1497 41 1 -7.6198 -11.3334 -2.1697 42 1 0.9887 -2.4384 -2.1469 43 1 -0.3995 -1.8152 -1.2185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328294089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:32 Heat of formation + Delta-G solvation = -12.381401 kcal Electronic energy + Delta-G solvation = -26269.634823 eV Core-core repulsion = 22442.252489 eV Total energy + Delta-G solvation = -3827.382334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55930 -40.04063 -38.35785 -36.87776 -35.84519 -33.31744 -32.57961 -31.70919 -29.72735 -29.44584 -26.50163 -25.25082 -24.91198 -23.40649 -22.06108 -21.78967 -20.55086 -20.09808 -18.85903 -18.31259 -17.29066 -16.69501 -16.23103 -16.03079 -15.82184 -15.47626 -15.06703 -14.85392 -14.55189 -14.38468 -14.01034 -13.76909 -13.64792 -13.31448 -13.19696 -12.79150 -12.59301 -12.44036 -12.11057 -11.92283 -11.83962 -11.73393 -11.39720 -10.99858 -10.68326 -10.45136 -10.28490 -10.06928 -10.03858 -9.88506 -9.82709 -9.34616 -9.32330 -9.20039 -9.11478 -8.53456 -8.42288 -7.82624 -6.02280 -4.10104 0.26421 0.93205 1.32873 1.76743 2.38715 2.65640 3.29428 3.37804 3.41204 3.62268 3.68015 4.00448 4.41485 4.44976 4.55536 4.69676 4.73129 4.79948 5.07205 5.11749 5.28520 5.47853 5.53934 5.65077 5.70182 5.74219 5.86396 6.04866 6.25922 6.39874 6.59614 6.61008 6.74989 6.86883 6.99772 7.03777 7.17119 7.20207 7.32518 7.58929 7.82792 7.95132 7.96967 8.15501 8.35161 8.56674 8.94225 9.55441 11.03525 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002119 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.304245 B =13210.984066 C =13827.479109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.127 4.127 13 C 0.050 3.950 14 N -0.566 5.566 15 C 0.495 3.505 16 O -0.524 6.524 17 C 0.514 3.486 18 O -0.512 6.512 19 N -0.705 5.705 20 C 0.125 3.875 21 C -0.059 4.059 22 C 0.053 3.947 23 N -0.469 5.469 24 C 0.040 3.960 25 C -0.261 4.261 26 S 0.130 5.870 27 C 0.109 3.891 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.055 0.945 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.048 0.952 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 -19.939 -6.607 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.166 4.166 13 C -0.072 4.072 14 N -0.298 5.298 15 C 0.276 3.724 16 O -0.402 6.402 17 C 0.297 3.703 18 O -0.389 6.389 19 N -0.359 5.359 20 C 0.000 4.000 21 C -0.100 4.100 22 C -0.225 4.225 23 N -0.183 5.183 24 C -0.111 4.111 25 C -0.400 4.400 26 S 0.383 5.617 27 C -0.011 4.011 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.194 0.806 41 H 0.196 0.804 42 H 0.067 0.933 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.497 -19.654 -7.058 24.865 hybrid contribution -0.186 0.708 0.687 1.004 sum -13.683 -18.946 -6.371 24.223 Atomic orbital electron populations 1.69889 1.05781 1.26766 1.49609 1.25068 0.94917 0.99338 0.94814 0.86511 0.80069 0.83666 0.77624 1.19768 1.20960 1.21001 1.21138 0.93022 0.90029 1.51460 0.92188 1.19058 0.92697 0.92513 0.93605 0.95209 1.21669 0.98540 0.94401 1.00496 1.21855 0.98414 0.98514 0.97783 1.23080 0.95320 0.90963 0.97829 1.48449 1.04326 1.10243 1.66782 1.19706 0.83983 0.88154 0.80549 1.90760 1.62092 1.38825 1.48493 1.20798 0.82427 0.90214 0.76897 1.90314 1.60193 1.41617 1.46804 1.45732 1.09267 1.11432 1.69431 1.21333 0.90406 0.84857 1.03386 1.20442 0.94392 0.90348 1.04804 1.26752 1.02385 1.01490 0.91910 1.66276 1.11460 1.12514 1.28080 1.21850 1.00932 0.90508 0.97835 1.27156 1.09734 1.05944 0.97162 1.84137 1.52737 1.08826 1.15951 1.22580 0.98755 0.80661 0.99124 0.92692 0.93077 0.93243 0.92319 0.92280 0.84051 0.92696 0.74847 0.90142 0.90657 0.87477 0.88456 0.80577 0.80448 0.93324 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 11.41 55.43 0.63 -24.81 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.04 8.56 -34.44 -0.29 -14.34 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.35 5.10 -26.69 -0.14 -2.49 16 12 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 13 C 0.05 0.89 6.27 -3.71 -0.02 0.86 16 14 N -0.57 -11.79 2.97 -173.01 -0.51 -12.30 16 15 C 0.50 9.86 7.74 -11.59 -0.09 9.77 16 16 O -0.52 -11.70 15.94 5.49 0.09 -11.61 16 17 C 0.51 8.28 7.78 -11.59 -0.09 8.19 16 18 O -0.51 -8.68 13.10 5.50 0.07 -8.60 16 19 N -0.70 -8.53 5.55 -60.74 -0.34 -8.87 16 20 C 0.13 1.22 5.66 -4.04 -0.02 1.20 16 21 C -0.06 -0.44 5.91 -27.88 -0.16 -0.60 16 22 C 0.05 0.46 6.64 -13.46 -0.09 0.37 16 23 N -0.47 -4.73 10.54 -11.86 -0.13 -4.85 16 24 C 0.04 0.31 11.35 -19.18 -0.22 0.09 16 25 C -0.26 -1.65 11.37 29.12 0.33 -1.32 16 26 S 0.13 0.88 23.18 -107.50 -2.49 -1.61 16 27 C 0.11 2.63 5.41 -3.49 -0.02 2.61 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.14 2.45 3.78 -56.75 -0.21 2.23 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.41 4.53 7.96 -40.82 -0.32 4.21 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.12 3.40 5.20 -51.93 -0.27 3.13 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -32.30 367.65 -9.28 -41.58 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.85 Total: 5.09 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.28 Total: 4.29 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.34 Total: -50.83 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.16 Total: -20.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.30 -9.28 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328294089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.202 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds