Wall clock time and date at job start Tue Mar 31 2020 21:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46939 * 2 1 4 4 C 1.33531 * 122.71574 * 125.02893 * 3 2 1 5 5 S 1.76174 * 108.05382 * 179.74685 * 4 3 2 6 6 C 1.70969 * 90.33901 * 0.32488 * 5 4 3 7 7 N 1.38753 * 124.94521 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00110 * 359.70503 * 7 6 5 9 9 O 1.21385 * 119.99767 * 359.97438 * 8 7 6 10 10 C 1.49298 * 120.00430 * 179.97438 * 8 7 6 11 11 O 1.21371 * 120.00025 * 353.87273 * 10 8 7 12 12 N 1.34775 * 120.00244 * 173.59678 * 10 8 7 13 13 C 1.46923 * 120.63182 * 352.66976 * 12 10 8 14 14 C 1.53184 * 108.77799 * 126.37077 * 13 12 10 15 15 C 1.53032 * 109.31405 * 54.63428 * 14 13 12 16 16 C 1.53036 * 109.53961 * 298.63428 * 15 14 13 17 17 H 1.09001 * 109.50143 * 301.38454 * 16 15 14 18 18 C 1.50706 * 109.50172 * 181.31702 * 16 15 14 19 19 H 1.08000 * 119.99662 * 0.02562 * 18 16 15 20 20 C 1.37874 * 120.00068 * 180.02562 * 18 16 15 21 21 N 1.31509 * 120.00423 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99564 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47690 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47257 * 119.99897 * 22 20 18 25 25 H 1.48504 * 109.47075 * 239.99818 * 22 20 18 26 26 C 1.46927 * 120.62982 * 172.39262 * 12 10 8 27 27 N 1.29676 * 110.11271 * 359.67103 * 6 5 4 28 28 H 1.08993 * 109.46819 * 299.99625 * 1 2 3 29 29 H 1.09000 * 109.46974 * 60.00119 * 1 2 3 30 30 H 1.09004 * 109.46528 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47078 * 240.00360 * 2 1 3 32 32 H 1.08993 * 109.47590 * 119.99899 * 2 1 3 33 33 H 1.07998 * 125.97365 * 359.97438 * 4 3 2 34 34 H 0.96996 * 120.00106 * 179.69706 * 7 6 5 35 35 H 1.09002 * 109.58643 * 246.15741 * 13 12 10 36 36 H 1.09002 * 109.58626 * 6.43411 * 13 12 10 37 37 H 1.09002 * 109.49972 * 174.58941 * 14 13 12 38 38 H 1.09011 * 109.49336 * 294.68252 * 14 13 12 39 39 H 1.08997 * 109.45991 * 58.65902 * 15 14 13 40 40 H 1.09009 * 109.46029 * 178.63085 * 15 14 13 41 41 H 0.96998 * 120.00514 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.58842 * 353.41325 * 26 12 10 43 43 H 1.08999 * 109.58935 * 113.84412 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8809 1.8864 0.9200 5 16 3.2133 3.5766 0.5506 6 6 2.1703 3.4967 -0.8017 7 7 1.9037 4.5513 -1.6632 8 6 2.4817 5.7515 -1.4583 9 8 3.2351 5.9099 -0.5198 10 6 2.1954 6.8860 -2.3855 11 8 1.5324 6.7004 -3.3850 12 7 2.6685 8.1175 -2.1098 13 6 3.3284 8.3961 -0.8270 14 6 4.7021 9.0151 -1.1033 15 6 4.5329 10.2418 -2.0025 16 6 3.9173 9.8168 -3.3376 17 1 4.5601 9.0777 -3.8158 18 6 3.7809 11.0202 -4.2345 19 1 4.1016 11.9914 -3.8875 20 6 3.2468 10.8814 -5.4979 21 7 2.8568 9.6988 -5.9207 22 14 3.0772 12.3732 -6.6092 23 1 3.5845 13.5770 -5.9030 24 1 3.8643 12.1583 -7.8500 25 1 1.6473 12.5705 -6.9581 26 6 2.5395 9.2055 -3.0888 27 7 1.6694 2.3054 -0.9088 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.2942 1.3239 1.7441 34 1 1.3015 4.4247 -2.4130 35 1 2.7229 9.0939 -0.2486 36 1 3.4492 7.4676 -0.2690 37 1 5.1622 9.3149 -0.1617 38 1 5.3373 8.2830 -1.6023 39 1 3.8778 10.9628 -1.5136 40 1 5.5066 10.6985 -2.1808 41 1 2.4813 9.6010 -6.8097 42 1 2.1424 8.8105 -4.0239 43 1 1.8684 9.9706 -2.6986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:01 Heat of formation + Delta-G solvation = -8.407892 kcal Electronic energy + Delta-G solvation = -26777.574129 eV Core-core repulsion = 22950.364099 eV Total energy + Delta-G solvation = -3827.210030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21285 -39.99989 -38.66697 -37.11939 -35.57728 -33.44004 -33.07879 -31.87726 -29.88817 -29.48452 -26.71099 -25.20182 -24.97512 -23.88219 -22.33587 -21.96439 -21.31334 -19.76808 -18.70479 -18.32339 -17.39330 -16.90367 -16.51988 -16.23577 -15.89830 -15.36519 -15.09562 -14.75018 -14.55663 -14.24565 -14.01506 -13.79405 -13.55127 -13.39286 -13.05250 -12.75611 -12.69737 -12.25888 -12.15417 -11.93845 -11.71459 -11.49844 -11.05837 -11.03275 -10.95589 -10.73923 -10.53250 -10.38575 -10.20898 -10.01654 -9.88625 -9.36327 -9.33183 -9.21111 -8.78606 -8.52423 -8.44112 -8.00719 -6.09294 -4.17407 0.46079 0.97481 1.42482 1.69401 2.10031 2.65887 3.25238 3.31559 3.34413 3.37352 3.56171 4.23604 4.35084 4.39921 4.78141 4.99006 5.07310 5.21820 5.24968 5.35445 5.42821 5.55413 5.58856 5.64155 5.80651 5.84608 5.95151 6.07482 6.12671 6.27789 6.34514 6.43807 6.54368 6.61554 6.76110 6.88786 6.94254 7.03105 7.40853 7.50249 7.61075 7.74981 7.82669 7.97472 8.19236 8.35788 8.86986 9.48844 10.96547 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023915 B = 0.002620 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.542493 B =10686.366528 C =11610.197918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.094 3.906 4 C -0.321 4.321 5 S 0.243 5.757 6 C 0.244 3.756 7 N -0.598 5.598 8 C 0.512 3.488 9 O -0.479 6.479 10 C 0.505 3.495 11 O -0.512 6.512 12 N -0.560 5.560 13 C 0.051 3.949 14 C -0.128 4.128 15 C -0.114 4.114 16 C 0.039 3.961 17 H 0.030 0.970 18 C -0.518 4.518 19 H 0.061 0.939 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.108 3.892 27 N -0.506 5.506 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.175 0.825 34 H 0.436 0.564 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.264 0.736 42 H 0.125 0.875 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -15.384 15.033 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.039 4.039 4 C -0.461 4.461 5 S 0.494 5.506 6 C -0.122 4.122 7 N -0.249 5.249 8 C 0.295 3.705 9 O -0.354 6.354 10 C 0.284 3.716 11 O -0.388 6.388 12 N -0.291 5.291 13 C -0.071 4.071 14 C -0.166 4.166 15 C -0.151 4.151 16 C 0.020 3.980 17 H 0.048 0.952 18 C -0.557 4.557 19 H 0.079 0.921 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.011 4.011 27 N -0.229 5.229 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.192 0.808 34 H 0.277 0.723 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.759 -14.608 14.933 20.904 hybrid contribution -0.715 -0.081 -1.122 1.333 sum -1.474 -14.689 13.811 20.215 Atomic orbital electron populations 1.21679 0.94335 1.01548 1.02699 1.20136 0.96669 0.88945 1.02905 1.19814 0.96677 0.96597 0.90784 1.27280 1.09407 1.01470 1.07987 1.84897 1.40940 1.05041 1.19768 1.23380 1.00630 0.90612 0.97617 1.42615 1.46099 1.07078 1.29077 1.21437 0.79694 0.83647 0.85684 1.90305 1.34759 1.79405 1.30888 1.19101 0.83032 0.83522 0.85899 1.90823 1.37922 1.82840 1.27263 1.48488 1.53374 1.08695 1.18589 1.23056 0.93819 1.05023 0.85195 1.21862 0.96058 0.98892 0.99786 1.21670 1.00527 0.95682 0.97269 1.18926 0.91547 0.96255 0.91245 0.95178 1.21116 1.41972 0.94126 0.98471 0.92078 1.25064 0.95103 0.95966 0.97964 1.69856 1.41356 1.21959 1.18903 0.86496 0.77809 0.82903 0.80582 1.19736 1.20958 1.20915 1.22532 1.01168 0.85594 0.91815 1.66061 1.28451 0.99302 1.29096 0.92895 0.91679 0.92403 0.90250 0.90301 0.80797 0.72283 0.92113 0.84514 0.92006 0.92198 0.93109 0.92884 0.92580 0.85697 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.81 37.16 0.36 -0.80 16 2 C -0.05 -0.38 6.43 -27.88 -0.18 -0.56 16 3 C 0.09 1.05 6.08 -84.20 -0.51 0.53 16 4 C -0.32 -3.19 11.05 29.08 0.32 -2.87 16 5 S 0.24 2.83 20.21 -107.50 -2.17 0.66 16 6 C 0.24 3.30 8.18 -87.55 -0.72 2.59 16 7 N -0.60 -8.35 5.39 -13.55 -0.07 -8.42 16 8 C 0.51 7.93 7.73 -11.66 -0.09 7.84 16 9 O -0.48 -7.21 10.56 5.47 0.06 -7.15 16 10 C 0.50 9.51 7.73 -11.66 -0.09 9.42 16 11 O -0.51 -11.02 15.95 5.48 0.09 -10.93 16 12 N -0.56 -10.88 2.98 -173.59 -0.52 -11.40 16 13 C 0.05 0.82 6.27 -3.72 -0.02 0.80 16 14 C -0.13 -2.10 6.08 -26.62 -0.16 -2.26 16 15 C -0.11 -2.22 5.11 -26.70 -0.14 -2.36 16 16 C 0.04 0.94 2.24 -91.87 -0.21 0.73 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -13.60 8.56 -34.44 -0.29 -13.89 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 21 N -0.88 -24.81 11.39 55.43 0.63 -24.18 16 22 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.11 2.50 5.35 -3.93 -0.02 2.48 16 27 N -0.51 -6.73 10.39 -11.32 -0.12 -6.85 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.47 8.03 -51.93 -0.42 0.06 16 33 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.44 5.79 8.30 -40.82 -0.34 5.45 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.14 2.08 3.79 -56.74 -0.22 1.87 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.13 3.33 5.17 -51.93 -0.27 3.06 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -29.29 362.55 -9.35 -38.64 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.85 Total: 5.25 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.84 Total: 3.21 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.08 Total: -50.85 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.15 Total: -18.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.17 Total: 0.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.29 -9.35 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.234 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds