Wall clock time and date at job start Tue Mar 31 2020 19:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31780 * 122.75498 * 2 1 4 4 C 1.29027 * 117.12590 * 180.33908 * 3 2 1 5 5 C 1.50702 * 124.91704 * 179.68247 * 4 3 2 6 6 C 1.53782 * 113.61507 * 39.16977 * 5 4 3 7 7 C 1.53953 * 87.01991 * 220.05205 * 6 5 4 8 8 C 1.53783 * 113.60850 * 301.56572 * 5 4 3 9 9 S 1.70975 * 110.16686 * 359.71210 * 4 3 2 10 10 C 1.33642 * 122.74689 * 179.80136 * 2 1 3 11 11 C 1.50703 * 126.03857 * 359.97134 * 10 2 1 12 12 C 1.50701 * 109.47064 * 89.71540 * 11 10 2 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46835 * 180.02562 * 15 14 12 17 17 O 1.21286 * 120.00016 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99933 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99761 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99755 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99833 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99545 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47148 * 60.00343 * 23 21 19 25 25 H 1.48505 * 109.46814 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47539 * 299.99809 * 23 21 19 27 27 H 1.09000 * 109.46758 * 270.20303 * 1 2 3 28 28 H 1.08994 * 109.47075 * 30.19634 * 1 2 3 29 29 H 1.08999 * 109.47654 * 150.20504 * 1 2 3 30 30 H 1.08997 * 112.84992 * 170.37227 * 5 4 3 31 31 H 1.09004 * 113.61329 * 334.57221 * 6 5 4 32 32 H 1.09002 * 113.61203 * 105.47369 * 6 5 4 33 33 H 1.08999 * 113.53473 * 270.81202 * 7 6 5 34 34 H 1.09001 * 113.74151 * 139.94567 * 7 6 5 35 35 H 1.09004 * 113.61373 * 254.52818 * 8 5 4 36 36 H 1.08994 * 113.61864 * 25.43531 * 8 5 4 37 37 H 1.09002 * 109.47152 * 329.71633 * 11 10 2 38 38 H 1.09001 * 109.46980 * 209.71733 * 11 10 2 39 39 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 41 41 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 42 42 H 0.97000 * 119.99708 * 359.97438 * 18 16 15 43 43 H 0.97008 * 119.99447 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9817 -0.0068 5 6 4.4836 2.1269 -0.0149 6 6 4.0589 3.3072 0.8748 7 6 4.5789 4.2313 -0.2414 8 6 4.3168 3.0716 -1.2168 9 16 3.9332 -0.6733 -0.0062 10 6 2.2299 -1.1240 0.0039 11 6 1.6846 -2.5289 0.0094 12 6 1.4956 -2.9999 -1.4096 13 8 1.7766 -2.2672 -2.3343 14 7 1.0153 -4.2359 -1.6510 15 6 0.8322 -4.6940 -3.0304 16 6 0.2868 -6.0988 -3.0250 17 8 0.0717 -6.6617 -1.9724 18 7 0.0379 -6.7296 -4.1897 19 6 -0.4588 -8.0075 -4.1847 20 1 -0.6503 -8.5087 -3.2475 21 6 -0.7158 -8.6576 -5.3856 22 7 -0.4833 -8.0475 -6.5260 23 14 -1.3919 -10.3989 -5.3787 24 1 -2.6982 -10.4200 -4.6726 25 1 -1.5781 -10.8631 -6.7770 26 1 -0.4376 -11.2978 -4.6813 27 1 -0.3633 0.0036 1.0277 28 1 -0.3633 0.8882 -0.5169 29 1 -0.3634 -0.8918 -0.5106 30 1 5.5122 1.8052 0.1482 31 1 2.9818 3.3722 1.0290 32 1 4.6256 3.3803 1.8030 33 1 5.6338 4.4860 -0.1393 34 1 3.9484 5.1024 -0.4192 35 1 5.0915 2.9549 -1.9747 36 1 3.3105 3.0722 -1.6354 37 1 0.7260 -2.5446 0.5281 38 1 2.3853 -3.1887 0.5210 39 1 0.7910 -4.8220 -0.9115 40 1 0.1314 -4.0345 -3.5423 41 1 1.7909 -4.6781 -3.5489 42 1 0.2096 -6.2792 -5.0315 43 1 -0.6624 -8.5015 -7.3643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890905708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:47 Heat of formation + Delta-G solvation = -22.669041 kcal Electronic energy + Delta-G solvation = -25401.747364 eV Core-core repulsion = 21573.918924 eV Total energy + Delta-G solvation = -3827.828439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47542 -39.58838 -38.53490 -38.05455 -34.50244 -33.70812 -33.29357 -31.42298 -30.40088 -27.96483 -27.57213 -25.92880 -25.48701 -24.25641 -22.90592 -20.65863 -20.07066 -19.62843 -18.42755 -18.18761 -18.05829 -17.22559 -16.32953 -15.83095 -15.51618 -15.46032 -15.18731 -14.94655 -14.43624 -14.14672 -14.12150 -13.90330 -13.31924 -13.19786 -13.11684 -13.05206 -12.71296 -12.68772 -12.25021 -12.22450 -12.10296 -11.84595 -11.65865 -11.19518 -11.17219 -11.12635 -10.85532 -10.75289 -10.53157 -10.34437 -9.89012 -9.65845 -9.62789 -9.27122 -8.86374 -8.68718 -8.61145 -8.13603 -6.54382 -3.96695 0.58662 1.24927 1.66772 2.64421 2.73262 3.11510 3.19540 3.22266 3.38157 3.70252 3.84045 4.08875 4.32968 4.33993 4.44325 4.54336 4.56402 4.83396 4.85809 4.97334 5.03123 5.13907 5.22242 5.29399 5.31885 5.38101 5.48383 5.52541 5.60554 5.65475 5.68580 5.76261 5.85487 5.86676 5.91577 6.02878 6.13360 6.22405 6.60503 7.42864 7.67618 7.72710 7.88338 8.36075 8.42216 9.01178 9.35615 9.83274 10.62301 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.031140 B = 0.001857 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.945740 B =15074.970303 C =15309.460226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.078 3.922 3 N -0.466 5.466 4 C 0.058 3.942 5 C -0.042 4.042 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.122 4.122 9 S 0.125 5.875 10 C -0.203 4.203 11 C -0.063 4.063 12 C 0.510 3.490 13 O -0.537 6.537 14 N -0.706 5.706 15 C 0.110 3.890 16 C 0.427 3.573 17 O -0.598 6.598 18 N -0.548 5.548 19 C -0.307 4.307 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.412 0.588 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.396 0.604 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 20.358 13.593 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 N -0.181 5.181 4 C -0.219 4.219 5 C -0.064 4.064 6 C -0.159 4.159 7 C -0.179 4.179 8 C -0.161 4.161 9 S 0.384 5.616 10 C -0.324 4.324 11 C -0.105 4.105 12 C 0.295 3.705 13 O -0.414 6.414 14 N -0.361 5.361 15 C -0.018 4.018 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.183 5.183 19 C -0.436 4.436 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.761 3.239 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.198 1.198 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.249 0.751 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.230 0.770 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.786 20.359 13.388 26.258 hybrid contribution -1.190 -1.064 -0.411 1.649 sum 8.596 19.295 12.976 24.791 Atomic orbital electron populations 1.20352 0.87235 1.03608 1.02570 1.20040 0.97971 0.86004 1.01384 1.65958 1.04372 1.31437 1.16290 1.26658 0.94195 0.97350 1.03718 1.21313 0.95714 0.89486 0.99932 1.22954 1.02560 0.93542 0.96807 1.22844 1.01383 0.97202 0.96462 1.22939 1.03121 0.94424 0.95590 1.83848 1.06942 1.02855 1.67975 1.24920 0.95085 0.99044 1.13368 1.20020 1.03688 0.91075 0.95733 1.20354 0.77671 0.81549 0.90939 1.90720 1.50335 1.54702 1.45675 1.45683 1.65419 1.15511 1.09468 1.20952 1.02009 0.95248 0.83599 1.19727 0.86036 0.87747 0.85221 1.90491 1.59132 1.67863 1.30996 1.41797 1.55244 1.14590 1.06620 1.19686 1.39594 0.89726 0.94601 0.87695 1.25337 0.97279 1.00487 0.94594 1.69609 1.47506 1.38563 0.97714 0.85860 0.79488 0.81315 0.77231 1.19758 1.20833 1.19761 0.90716 0.90553 0.90780 0.87411 0.88756 0.91232 0.90029 0.90960 0.90997 0.89157 0.86657 0.87539 0.75053 0.89851 0.89884 0.77028 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.82 36.00 0.35 -0.48 16 2 C 0.08 1.00 6.74 -84.23 -0.57 0.43 16 3 N -0.47 -6.05 10.07 -8.06 -0.08 -6.13 16 4 C 0.06 0.67 6.47 -13.46 -0.09 0.58 16 5 C -0.04 -0.36 4.24 -90.96 -0.39 -0.75 16 6 C -0.12 -0.89 7.63 -25.83 -0.20 -1.09 16 7 C -0.14 -0.91 8.09 -25.83 -0.21 -1.12 16 8 C -0.12 -0.99 7.63 -25.92 -0.20 -1.19 16 9 S 0.12 1.43 23.18 -107.50 -2.49 -1.06 16 10 C -0.20 -2.54 5.08 -35.92 -0.18 -2.72 16 11 C -0.06 -0.70 5.63 -29.03 -0.16 -0.86 16 12 C 0.51 7.67 7.82 -10.98 -0.09 7.58 16 13 O -0.54 -9.95 16.03 5.56 0.09 -9.87 16 14 N -0.71 -11.16 5.53 -61.47 -0.34 -11.50 16 15 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 16 C 0.43 9.62 7.85 -10.98 -0.09 9.53 16 17 O -0.60 -14.96 15.24 5.55 0.08 -14.88 16 18 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 19 C -0.31 -8.26 9.68 -14.93 -0.14 -8.40 16 20 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -23.71 13.05 55.50 0.72 -22.99 16 23 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.79 7.36 -51.93 -0.38 0.41 16 30 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.85 7.74 -51.93 -0.40 0.44 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.12 1.01 7.44 -51.93 -0.39 0.62 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.41 6.23 7.44 -40.82 -0.30 5.93 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 43 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -32.31 380.45 -9.40 -41.71 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.95 Total: 13.09 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.08 Total: 4.05 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.25 Total: -54.13 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.17 Total: -24.74 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.49 Total: -1.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.31 -9.40 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890905708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.045 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds