Wall clock time and date at job start Tue Mar 31 2020 19:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.28647 * 124.72235 * 2 1 4 4 C 1.33556 * 115.76838 * 180.19332 * 3 2 1 5 5 C 1.47269 * 123.14122 * 179.82916 * 4 3 2 6 6 O 1.21628 * 120.00096 * 186.19976 * 5 4 3 7 7 N 1.34778 * 119.99922 * 6.20417 * 5 4 3 8 8 C 1.47120 * 121.05070 * 177.97810 * 7 5 4 9 9 C 1.53236 * 108.71517 * 232.21208 * 8 7 5 10 10 O 1.43098 * 109.34291 * 305.85586 * 9 8 7 11 11 C 1.42490 * 113.99081 * 59.95867 * 10 9 8 12 12 C 1.53462 * 113.77163 * 73.26118 * 11 10 9 13 13 N 1.47668 * 85.97235 * 91.26995 * 12 11 10 14 14 C 1.36941 * 134.45632 * 204.27368 * 13 12 11 15 15 H 1.08000 * 119.99664 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00034 * 0.02826 * 14 13 12 17 17 N 1.31623 * 119.99967 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00044 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47212 * 89.99625 * 18 16 14 20 20 H 1.48498 * 109.47354 * 210.00099 * 18 16 14 21 21 H 1.48502 * 109.46940 * 330.00040 * 18 16 14 22 22 C 1.47673 * 91.08497 * 24.29566 * 13 12 11 23 23 C 1.47332 * 121.05457 * 357.95356 * 7 5 4 24 24 C 1.35205 * 113.71884 * 359.55510 * 4 3 2 25 25 C 1.50702 * 125.58665 * 180.19338 * 24 4 3 26 26 S 1.70770 * 124.72121 * 179.73736 * 2 1 3 27 27 H 1.09002 * 109.47193 * 180.29258 * 1 2 3 28 28 H 1.09004 * 109.46949 * 300.28977 * 1 2 3 29 29 H 1.08998 * 109.47773 * 60.29169 * 1 2 3 30 30 H 1.09001 * 109.60015 * 112.44606 * 8 7 5 31 31 H 1.09007 * 109.59797 * 351.97960 * 8 7 5 32 32 H 1.09003 * 109.49158 * 65.82091 * 9 8 7 33 33 H 1.09003 * 109.48932 * 185.89768 * 9 8 7 34 34 H 1.08995 * 113.78961 * 205.53675 * 12 11 10 35 35 H 1.09004 * 113.78728 * 337.00513 * 12 11 10 36 36 H 0.96999 * 119.99666 * 179.97438 * 17 16 14 37 37 H 1.09008 * 113.78766 * 221.43566 * 22 13 12 38 38 H 1.08996 * 113.90286 * 89.98311 * 22 13 12 39 39 H 1.08999 * 109.74631 * 251.29028 * 23 7 5 40 40 H 1.09008 * 109.74064 * 12.00137 * 23 7 5 41 41 H 1.08998 * 109.46413 * 90.01079 * 25 24 4 42 42 H 1.09003 * 109.46846 * 210.00044 * 25 24 4 43 43 H 1.08995 * 109.47367 * 330.00471 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5590 0.8495 -0.0041 5 6 4.5462 1.9423 -0.0084 6 8 5.7305 1.6915 -0.1257 7 7 4.1373 3.2203 0.1178 8 6 5.1064 4.3264 0.1607 9 6 4.8199 5.1835 1.3982 10 8 3.4484 5.5916 1.3849 11 6 2.5217 4.5092 1.3961 12 6 2.4196 3.7963 2.7512 13 7 1.3307 4.7474 3.0520 14 6 0.7851 5.2474 4.2042 15 1 -0.0309 5.9531 4.1533 16 6 1.2807 4.8472 5.4375 17 7 2.2755 3.9876 5.4995 18 14 0.5359 5.5287 7.0092 19 1 -0.5778 4.6509 7.4504 20 1 1.5755 5.5795 8.0683 21 1 0.0175 6.8975 6.7583 22 6 1.0658 4.9428 1.6125 23 6 2.7057 3.5540 0.2166 24 6 3.9036 -0.4579 0.0021 25 6 5.3122 -0.9935 0.0037 26 16 2.4796 -1.4036 0.0064 27 1 -0.3634 -1.0277 0.0052 28 1 -0.3633 0.5183 0.8874 29 1 -0.3634 0.5093 -0.8925 30 1 5.0056 4.9359 -0.7373 31 1 6.1178 3.9243 0.2207 32 1 5.0173 4.6006 2.2979 33 1 5.4617 6.0645 1.3870 34 1 2.0906 2.7597 2.6790 35 1 3.2999 3.9220 3.3816 36 1 2.6220 3.7082 6.3614 37 1 0.8703 5.9795 1.3381 38 1 0.3342 4.2482 1.1998 39 1 2.3758 4.0369 -0.7033 40 1 2.1266 2.6458 0.3845 41 1 5.6523 -1.1178 1.0318 42 1 5.3350 -1.9571 -0.5055 43 1 5.9678 -0.2934 -0.5139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053303213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:36 Heat of formation + Delta-G solvation = 50.611140 kcal Electronic energy + Delta-G solvation = -28362.630576 eV Core-core repulsion = 24537.979803 eV Total energy + Delta-G solvation = -3824.650772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93271 -39.47307 -38.30769 -36.00936 -34.49062 -33.33113 -32.18582 -30.58417 -29.84189 -28.04954 -26.45268 -25.66874 -25.06883 -24.58814 -22.73789 -21.92229 -20.54512 -19.02165 -18.67004 -18.46813 -16.79257 -16.29676 -16.15161 -15.85289 -15.32094 -14.93775 -14.87413 -14.47119 -14.14805 -13.99309 -13.76414 -13.53128 -13.48523 -13.21174 -13.12855 -12.95660 -12.46948 -12.38699 -12.30929 -12.22366 -11.81349 -11.72687 -11.28450 -11.06033 -10.85333 -10.76787 -10.55570 -10.22304 -9.95054 -9.82693 -9.54548 -9.53015 -9.16433 -8.95785 -8.86977 -8.76569 -8.09170 -6.82386 -5.70869 -3.02807 0.44091 1.07447 1.47765 1.91584 3.10567 3.40509 3.41886 3.46587 3.49034 3.86086 4.22316 4.48968 4.63040 4.82271 4.86232 5.09457 5.15291 5.24905 5.31846 5.36301 5.39705 5.44899 5.49463 5.56275 5.61251 5.67674 5.67948 5.82029 5.90452 6.04731 6.08930 6.21023 6.37396 6.46192 6.57066 6.59990 6.83329 7.08177 7.26039 7.31054 7.55261 7.58111 7.94345 8.03578 8.23939 9.09021 9.75827 10.63743 11.46158 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.004313 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.389201 B = 6490.718360 C = 7536.448578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.027 3.973 3 N -0.432 5.432 4 C 0.008 3.992 5 C 0.597 3.403 6 O -0.543 6.543 7 N -0.588 5.588 8 C 0.078 3.922 9 C 0.050 3.950 10 O -0.346 6.346 11 C 0.050 3.950 12 C 0.155 3.845 13 N -0.603 5.603 14 C -0.217 4.217 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.137 3.863 23 C 0.050 3.950 24 C -0.186 4.186 25 C -0.088 4.088 26 S 0.198 5.802 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.252 0.748 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 -11.232 -15.185 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.252 4.252 3 N -0.147 5.147 4 C -0.125 4.125 5 C 0.384 3.616 6 O -0.423 6.423 7 N -0.319 5.319 8 C -0.045 4.045 9 C -0.028 4.028 10 O -0.264 6.264 11 C 0.008 3.992 12 C 0.030 3.970 13 N -0.329 5.329 14 C -0.344 4.344 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.011 3.989 23 C -0.073 4.073 24 C -0.310 4.310 25 C -0.147 4.147 26 S 0.455 5.545 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.180 0.820 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.390 -11.638 -14.881 18.943 hybrid contribution 0.231 0.950 1.027 1.418 sum 1.621 -10.688 -13.855 17.573 Atomic orbital electron populations 1.20483 0.84570 1.03668 1.05153 1.27240 1.02459 0.91439 1.04021 1.66606 1.03142 1.29119 1.15874 1.20195 0.89846 0.93061 1.09434 1.17036 0.86496 0.81502 0.76588 1.90694 1.16438 1.82971 1.52154 1.47947 1.08686 1.05019 1.70204 1.22342 0.94186 0.88363 0.99582 1.22850 0.84560 0.98957 0.96436 1.87895 1.13841 1.30320 1.94371 1.23690 0.91785 0.88389 0.95317 1.22602 0.93267 0.91688 0.89474 1.45773 1.38920 1.49031 0.99161 1.19002 1.13170 1.19849 0.82398 0.90176 1.24757 0.98813 0.99589 0.97328 1.69830 1.27806 1.35759 1.23632 0.86126 0.78013 0.78445 0.83234 1.21712 1.21714 1.20592 1.22462 0.90677 0.99091 0.86685 1.23805 0.80852 1.04398 0.98265 1.25455 1.03067 0.96272 1.06190 1.20560 0.88903 1.01329 1.03863 1.82735 0.94589 1.11425 1.65716 0.90204 0.88642 0.89136 0.90889 0.88449 0.92288 0.88211 0.95326 0.90927 0.93798 0.92857 0.93302 0.92036 0.81967 0.90046 0.91412 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.47 36.00 0.38 -0.29 16 2 C 0.03 0.31 7.34 -13.62 -0.10 0.21 16 3 N -0.43 -6.40 6.65 -8.51 -0.06 -6.45 16 4 C 0.01 0.12 6.56 -84.53 -0.55 -0.43 16 5 C 0.60 10.39 7.68 -12.59 -0.10 10.30 16 6 O -0.54 -9.86 13.56 5.25 0.07 -9.79 16 7 N -0.59 -10.10 3.03 -173.75 -0.53 -10.63 16 8 C 0.08 1.21 6.59 -3.58 -0.02 1.18 16 9 C 0.05 0.86 6.88 37.28 0.26 1.12 16 10 O -0.35 -7.25 10.52 -35.23 -0.37 -7.62 16 11 C 0.05 1.03 1.21 -90.30 -0.11 0.92 16 12 C 0.16 3.87 6.65 -3.17 -0.02 3.85 16 13 N -0.60 -16.08 3.70 -180.31 -0.67 -16.74 16 14 C -0.22 -6.25 10.70 -15.06 -0.16 -6.42 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.92 -28.19 11.39 55.49 0.63 -27.56 16 18 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.14 2.95 8.33 -3.18 -0.03 2.92 16 23 C 0.05 0.88 5.51 -3.64 -0.02 0.86 16 24 C -0.19 -2.43 6.40 -35.39 -0.23 -2.65 16 25 C -0.09 -0.99 9.73 36.01 0.35 -0.64 16 26 S 0.20 1.97 22.87 -107.50 -2.46 -0.49 16 27 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.45 7.07 -51.93 -0.37 1.08 16 32 H 0.06 1.15 7.20 -51.93 -0.37 0.77 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.03 0.74 7.94 -51.93 -0.41 0.33 16 35 H 0.07 2.05 6.31 -51.93 -0.33 1.73 16 36 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 38 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.16 2.85 3.59 -85.12 -0.31 2.54 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 1.40 5.87 -51.93 -0.30 1.10 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -35.07 357.61 -9.32 -44.39 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.86 Total: 1.28 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -0.45 Total: 10.59 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.62 Total: -61.38 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.30 Total: -17.41 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.46 Total: -0.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.07 -9.32 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053303213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.002 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds