Wall clock time and date at job start Tue Mar 31 2020 20:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28652 * 124.72261 * 2 1 4 4 C 1.33553 * 115.76443 * 180.15455 * 3 2 1 5 5 C 1.47270 * 123.14128 * 179.83046 * 4 3 2 6 6 O 1.21630 * 120.00205 * 179.70608 * 5 4 3 7 7 N 1.34779 * 119.99821 * 359.70371 * 5 4 3 8 8 C 1.46495 * 120.00270 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47277 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.82420 * 59.43784 * 9 8 7 11 11 C 1.54473 * 109.90712 * 180.37627 * 9 8 7 12 12 C 1.55510 * 102.38818 * 140.92125 * 11 9 8 13 13 C 1.53881 * 100.75539 * 327.03171 * 12 11 9 14 14 C 1.52377 * 115.67709 * 263.23108 * 13 12 11 15 15 N 1.47275 * 87.70343 * 218.74807 * 14 13 12 16 16 C 1.36935 * 135.93442 * 206.17406 * 15 14 13 17 17 H 1.08006 * 120.00018 * 7.56890 * 16 15 14 18 18 C 1.38818 * 120.00126 * 187.55930 * 16 15 14 19 19 N 1.31612 * 119.99984 * 174.51404 * 18 16 15 20 20 Si 1.86797 * 119.99618 * 354.51503 * 18 16 15 21 21 H 1.48497 * 109.46833 * 174.94589 * 20 18 16 22 22 H 1.48497 * 109.47523 * 294.94736 * 20 18 16 23 23 H 1.48508 * 109.47271 * 54.94852 * 20 18 16 24 24 C 1.47274 * 88.12736 * 26.43491 * 15 14 13 25 25 O 1.42402 * 106.67424 * 34.97284 * 13 12 11 26 26 C 1.35199 * 113.72051 * 359.55766 * 4 3 2 27 27 S 1.70769 * 124.71716 * 179.69360 * 2 1 3 28 28 H 1.08996 * 109.47759 * 180.28321 * 1 2 3 29 29 H 1.09006 * 109.47068 * 300.28449 * 1 2 3 30 30 H 1.09004 * 109.46988 * 60.28324 * 1 2 3 31 31 H 0.97008 * 120.00033 * 0.02562 * 7 5 4 32 32 H 1.09008 * 109.47139 * 60.00048 * 8 7 5 33 33 H 1.08997 * 109.47169 * 300.00072 * 8 7 5 34 34 H 1.09001 * 110.82679 * 259.14259 * 11 9 8 35 35 H 1.09004 * 110.82915 * 22.50098 * 11 9 8 36 36 H 1.09002 * 111.16142 * 209.15506 * 12 11 9 37 37 H 1.09003 * 111.15706 * 84.90239 * 12 11 9 38 38 H 1.08996 * 113.51643 * 104.03947 * 14 13 12 39 39 H 1.09006 * 113.51474 * 333.45290 * 14 13 12 40 40 H 0.96998 * 120.00657 * 354.90781 * 19 18 16 41 41 H 1.08999 * 113.51507 * 88.27374 * 24 15 14 42 42 H 1.08997 * 113.50859 * 218.85232 * 24 15 14 43 43 H 1.08003 * 125.59147 * 180.23361 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5590 0.8495 -0.0032 5 6 4.5464 1.9422 -0.0074 6 8 5.7356 1.6873 -0.0048 7 7 4.1320 3.2247 -0.0141 8 6 5.1141 4.3117 -0.0188 9 6 4.3856 5.6572 -0.0254 10 1 3.7508 5.7381 0.8569 11 6 5.4124 6.8112 -0.0400 12 6 4.7481 7.8367 -1.0019 13 6 4.0273 6.8899 -1.9777 14 6 4.7708 6.5850 -3.2723 15 7 3.4717 6.6467 -3.9634 16 6 2.9365 6.1068 -5.1024 17 1 3.4880 5.3630 -5.6582 18 6 1.6849 6.5155 -5.5425 19 7 1.2167 6.0786 -6.6923 20 14 0.6655 7.6854 -4.5027 21 1 -0.5655 8.0613 -5.2434 22 1 0.2927 7.0191 -3.2290 23 1 1.4587 8.9061 -4.2090 24 6 3.0021 7.5481 -2.8976 25 8 3.5868 5.7726 -1.2125 26 6 3.9036 -0.4579 0.0035 27 16 2.4796 -1.4037 0.0075 28 1 -0.3634 -1.0276 0.0051 29 1 -0.3633 0.5183 0.8875 30 1 -0.3633 0.5094 -0.8925 31 1 3.1835 3.4280 -0.0158 32 1 5.7396 4.2324 -0.9080 33 1 5.7383 4.2413 0.8720 34 1 5.5320 7.2361 0.9567 35 1 6.3711 6.4720 -0.4324 36 1 5.4986 8.4360 -1.5173 37 1 4.0375 8.4705 -0.4715 38 1 5.2260 5.5948 -3.2896 39 1 5.4612 7.3730 -3.5733 40 1 1.7745 5.5309 -7.2666 41 1 3.2076 8.6000 -3.0957 42 1 1.9692 7.3680 -2.5997 43 1 4.9130 -0.8419 0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053649502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:14 Heat of formation + Delta-G solvation = 30.689878 kcal Electronic energy + Delta-G solvation = -26953.157541 eV Core-core repulsion = 23127.642918 eV Total energy + Delta-G solvation = -3825.514623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65480 -40.20774 -38.70081 -36.86475 -34.50391 -32.57571 -32.33827 -32.03982 -29.69962 -28.57431 -27.27751 -25.55934 -25.26331 -23.47265 -21.60700 -21.44729 -20.98891 -19.89641 -19.27485 -18.77740 -17.38822 -16.93103 -16.63945 -15.88428 -15.71312 -15.63161 -15.15448 -14.70031 -14.53755 -14.08798 -13.96371 -13.74682 -13.63609 -13.14555 -13.12931 -13.02470 -12.75568 -12.50149 -12.45176 -12.20061 -12.11304 -11.72139 -11.59056 -11.37496 -10.80004 -10.59056 -10.39937 -10.32649 -10.21426 -10.01885 -9.86401 -9.52388 -9.22133 -9.07221 -8.93854 -8.86690 -8.81154 -7.10516 -6.22760 -3.15253 0.31741 0.99115 1.36402 1.82682 3.12976 3.32046 3.44075 3.49839 3.68210 3.75120 3.91589 4.47879 4.62729 4.65651 4.65947 4.77688 4.93033 4.95644 5.01426 5.03581 5.11639 5.17502 5.23491 5.36477 5.47696 5.53487 5.56002 5.60493 5.71863 5.78122 5.89469 5.97143 6.08686 6.19194 6.26288 6.33230 6.39865 6.44052 6.56162 7.16829 7.17930 7.48718 7.58637 8.15997 8.30213 9.04348 9.56635 10.42379 11.27583 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.003576 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.864529 B = 7827.095524 C = 9554.627421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.443 5.443 4 C 0.016 3.984 5 C 0.594 3.406 6 O -0.543 6.543 7 N -0.699 5.699 8 C 0.112 3.888 9 C 0.064 3.936 10 H 0.085 0.915 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.070 3.930 14 C 0.109 3.891 15 N -0.621 5.621 16 C -0.297 4.297 17 H 0.081 0.919 18 C -0.025 4.025 19 N -0.937 5.937 20 Si 1.070 2.930 21 H -0.295 1.295 22 H -0.291 1.291 23 H -0.288 1.288 24 C 0.102 3.898 25 O -0.331 6.331 26 C -0.230 4.230 27 S 0.203 5.797 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.259 0.741 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -9.359 20.475 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 N -0.159 5.159 4 C -0.119 4.119 5 C 0.377 3.623 6 O -0.421 6.421 7 N -0.350 5.350 8 C -0.012 4.012 9 C 0.005 3.995 10 H 0.103 0.897 11 C -0.181 4.181 12 C -0.177 4.177 13 C 0.029 3.971 14 C -0.017 4.017 15 N -0.349 5.349 16 C -0.424 4.424 17 H 0.099 0.901 18 C -0.224 4.224 19 N -0.580 5.580 20 Si 0.902 3.098 21 H -0.223 1.223 22 H -0.219 1.219 23 H -0.215 1.215 24 C -0.024 4.024 25 O -0.249 6.249 26 C -0.372 4.372 27 S 0.460 5.540 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.252 0.748 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.229 -9.540 20.265 22.509 hybrid contribution 2.059 0.150 -0.219 2.076 sum 4.288 -9.390 20.046 22.548 Atomic orbital electron populations 1.20472 0.84549 1.03648 1.05095 1.27173 1.02416 0.91298 1.04053 1.66901 1.02945 1.31328 1.14706 1.20395 0.90003 0.93421 1.08085 1.17042 0.86650 0.82001 0.76613 1.90796 1.16004 1.83977 1.51297 1.45669 1.11665 1.04649 1.73009 1.21860 0.91374 0.85166 1.02755 1.23087 0.92823 0.93553 0.90001 0.89695 1.23064 0.98929 0.95190 1.00942 1.23004 0.99985 0.97791 0.96925 1.23163 0.96896 0.86133 0.90861 1.22702 0.90629 0.99324 0.89078 1.45879 1.08824 1.53800 1.26353 1.20134 1.03357 1.19734 0.99130 0.90102 1.25691 0.95982 1.01868 0.98821 1.70905 1.39024 1.38042 1.09982 0.83734 0.75900 0.75869 0.74274 1.22275 1.21896 1.21519 1.22852 0.97988 0.94609 0.86910 1.88391 1.55131 1.48632 1.32751 1.26553 1.06019 0.96818 1.07788 1.82803 0.94660 1.11727 1.64851 0.90119 0.89167 0.88806 0.74773 0.90666 0.90466 0.89938 0.90058 0.89516 0.90124 0.93399 0.93621 0.93055 0.92411 0.92103 0.79411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.47 36.01 0.38 -0.19 16 2 C 0.03 0.32 7.34 -13.61 -0.10 0.22 16 3 N -0.44 -6.13 10.12 -8.51 -0.09 -6.21 16 4 C 0.02 0.23 6.70 -84.53 -0.57 -0.34 16 5 C 0.59 9.57 7.80 -12.59 -0.10 9.47 16 6 O -0.54 -9.81 16.71 5.25 0.09 -9.72 16 7 N -0.70 -10.55 5.47 -61.43 -0.34 -10.89 16 8 C 0.11 1.53 5.24 -4.04 -0.02 1.50 16 9 C 0.06 0.83 3.61 -25.96 -0.09 0.74 16 10 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.14 -1.52 6.56 -24.62 -0.16 -1.68 16 12 C -0.14 -1.75 6.49 -24.94 -0.16 -1.91 16 13 C 0.07 1.27 1.56 -90.66 -0.14 1.13 16 14 C 0.11 2.27 8.24 -7.88 -0.06 2.21 16 15 N -0.62 -16.11 3.70 -184.80 -0.68 -16.79 16 16 C -0.30 -9.02 11.08 -15.06 -0.17 -9.19 16 17 H 0.08 2.60 8.06 -52.48 -0.42 2.18 16 18 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 19 N -0.94 -30.54 13.70 55.49 0.76 -29.78 16 20 Si 1.07 27.70 25.17 -169.99 -4.28 23.42 16 21 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.29 -7.26 6.49 56.52 0.37 -6.89 16 23 H -0.29 -6.84 6.18 56.52 0.35 -6.49 16 24 C 0.10 2.23 5.25 -7.73 -0.04 2.19 16 25 O -0.33 -6.05 10.69 -35.23 -0.38 -6.43 16 26 C -0.23 -2.68 10.62 29.65 0.31 -2.36 16 27 S 0.20 1.74 22.90 -107.50 -2.46 -0.72 16 28 H 0.08 0.38 8.12 -51.93 -0.42 -0.05 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.42 6.30 7.92 -40.82 -0.32 5.98 16 32 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 36 H 0.09 0.99 7.93 -51.93 -0.41 0.57 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.87 7.99 -51.93 -0.41 0.45 16 40 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 41 H 0.06 1.18 7.59 -51.93 -0.39 0.79 16 42 H 0.06 1.41 4.80 -51.93 -0.25 1.16 16 43 H 0.19 1.96 8.03 -52.48 -0.42 1.53 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -37.75 366.84 -8.95 -46.71 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.09 Total: 3.97 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.02 Total: 0.92 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.34 Total: -63.67 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.29 Total: -16.15 kcal Atomic # 14 Polarization: 27.70 SS G_CDS: -4.28 Total: 23.42 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.46 Total: -0.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.75 -8.95 -46.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053649502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.399 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds