Wall clock time and date at job start Tue Mar 31 2020 19:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33642 * 122.74549 * 2 1 4 4 S 1.76203 * 107.91908 * 179.76017 * 3 2 1 5 5 C 1.70981 * 90.28399 * 0.28246 * 4 3 2 6 6 C 1.50700 * 124.91600 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46995 * 194.69911 * 6 5 4 8 8 N 1.46499 * 109.46791 * 314.69539 * 6 5 4 9 9 C 1.34784 * 119.99893 * 205.00137 * 8 6 5 10 10 O 1.21341 * 119.99658 * 0.02562 * 9 8 6 11 11 C 1.49448 * 119.99762 * 179.72897 * 9 8 6 12 12 O 1.21348 * 120.00622 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99767 * 179.97438 * 11 9 8 14 14 C 1.46498 * 120.00210 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47427 * 179.97438 * 14 13 11 16 16 C 1.50693 * 109.47512 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99607 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00209 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00107 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99860 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47200 * 59.99997 * 20 18 16 22 22 H 1.48497 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47156 * 300.00011 * 20 18 16 24 24 C 1.52995 * 109.47096 * 74.69488 * 6 5 4 25 25 C 1.52999 * 117.49949 * 248.61866 * 24 6 5 26 26 C 1.53002 * 60.00192 * 252.51434 * 25 24 6 27 27 N 1.29028 * 110.16602 * 359.71434 * 5 4 3 28 28 H 1.08998 * 109.47344 * 270.02370 * 1 2 3 29 29 H 1.08998 * 109.47179 * 30.02339 * 1 2 3 30 30 H 1.08999 * 109.47112 * 150.01865 * 1 2 3 31 31 H 1.07990 * 126.04256 * 359.97438 * 3 2 1 32 32 H 0.97005 * 120.00261 * 25.00349 * 8 6 5 33 33 H 0.97004 * 120.00037 * 0.02562 * 13 11 9 34 34 H 1.08998 * 109.47521 * 300.00219 * 14 13 11 35 35 H 1.09001 * 109.46777 * 60.00164 * 14 13 11 36 36 H 1.08998 * 109.47065 * 300.00641 * 15 14 13 37 37 H 1.09006 * 109.46890 * 59.99899 * 15 14 13 38 38 H 0.97001 * 119.99847 * 180.02562 * 19 18 16 39 39 H 1.08997 * 115.55360 * 34.33312 * 24 6 5 40 40 H 1.08995 * 117.49974 * 0.02562 * 25 24 6 41 41 H 1.09008 * 117.49715 * 145.02456 * 25 24 6 42 42 H 1.08999 * 117.49973 * 252.51065 * 26 25 24 43 43 H 1.08996 * 117.51465 * 107.47926 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0070 5 6 3.5039 -0.9819 0.0008 6 6 4.4835 -2.1271 0.0021 7 1 3.9654 -3.0486 -0.2633 8 7 5.5434 -1.8641 -0.9745 9 6 6.2247 -2.8900 -1.5222 10 8 5.9599 -4.0313 -1.2068 11 6 7.3018 -2.6220 -2.5230 12 8 7.5627 -1.4808 -2.8428 13 7 7.9835 -3.6477 -3.0703 14 6 9.0389 -3.3852 -4.0517 15 6 9.6493 -4.7107 -4.5114 16 6 10.7354 -4.4406 -5.5205 17 1 10.9675 -3.4250 -5.8051 18 6 11.4328 -5.4900 -6.0803 19 7 11.1498 -6.7268 -5.7340 20 14 12.7797 -5.1550 -7.3306 21 1 13.8342 -4.3145 -6.7090 22 1 13.3719 -6.4416 -7.7768 23 1 12.2039 -4.4427 -8.4995 24 6 5.0983 -2.2708 1.3957 25 6 6.5807 -1.9263 1.5528 26 6 6.1250 -3.3860 1.6033 27 7 2.2199 -1.1083 0.0004 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.8392 2.1308 -0.0004 32 1 5.7548 -0.9516 -1.2269 33 1 7.7747 -4.5600 -2.8149 34 1 8.6157 -2.8628 -4.9096 35 1 9.8132 -2.7678 -3.5962 36 1 10.0726 -5.2327 -3.6533 37 1 8.8752 -5.3286 -4.9668 38 1 11.6407 -7.4650 -6.1276 39 1 4.4356 -2.0355 2.2285 40 1 7.1179 -1.5970 0.6635 41 1 6.8935 -1.4641 2.4892 42 1 6.1379 -3.8841 2.5727 43 1 6.3621 -4.0175 0.7471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346715821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:53 Heat of formation + Delta-G solvation = -2.064583 kcal Electronic energy + Delta-G solvation = -25940.606438 eV Core-core repulsion = 22113.671475 eV Total energy + Delta-G solvation = -3826.934963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03637 -40.18536 -38.84066 -37.35031 -35.30459 -34.40785 -32.90345 -32.46350 -29.87858 -28.99645 -27.92544 -25.65446 -23.90362 -23.48416 -22.53787 -21.19915 -20.68464 -20.61124 -19.67583 -18.76905 -17.83354 -16.96876 -16.75752 -16.33830 -16.01367 -15.39149 -15.25843 -15.13167 -14.77967 -14.53635 -14.38187 -13.90447 -13.70707 -13.53175 -13.16607 -13.00659 -12.88368 -12.79323 -12.33679 -12.27654 -11.77043 -11.70192 -11.51254 -11.26494 -11.06223 -10.70270 -10.66479 -10.46549 -10.41593 -10.00952 -9.86771 -9.82461 -9.55510 -9.47729 -9.27178 -9.10353 -8.74732 -8.43281 -6.11248 -4.15136 0.23150 0.90948 1.32785 1.46498 2.16624 2.45870 3.29306 3.29943 3.34113 3.35655 3.38944 3.66787 3.76220 4.36108 4.39174 4.47305 4.63810 4.70498 4.72581 4.81628 4.88077 5.05360 5.18459 5.22564 5.25548 5.30638 5.45363 5.52134 5.63940 5.80675 5.88486 5.94518 6.10358 6.14822 6.20537 6.53647 6.65124 6.84502 7.30804 7.41010 7.55531 7.55641 7.80857 7.85455 8.16171 8.28614 8.90115 9.49795 11.00105 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.002127 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.023137 B =13159.284296 C =13611.876311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.261 4.261 4 S 0.146 5.854 5 C 0.041 3.959 6 C 0.254 3.746 7 H 0.126 0.874 8 N -0.704 5.704 9 C 0.514 3.486 10 O -0.505 6.505 11 C 0.498 3.502 12 O -0.530 6.530 13 N -0.683 5.683 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.173 4.173 25 C -0.174 4.174 26 C -0.171 4.171 27 N -0.457 5.457 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.180 0.820 32 H 0.412 0.588 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 14.662 16.599 29.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.400 4.400 4 S 0.401 5.599 5 C -0.237 4.237 6 C 0.146 3.854 7 H 0.144 0.856 8 N -0.359 5.359 9 C 0.296 3.704 10 O -0.380 6.380 11 C 0.277 3.723 12 O -0.408 6.408 13 N -0.334 5.334 14 C -0.003 4.003 15 C -0.026 4.026 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.193 4.193 25 C -0.212 4.212 26 C -0.208 4.208 27 N -0.172 5.172 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.197 0.803 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.213 14.460 16.527 28.530 hybrid contribution -0.270 0.230 -0.614 0.709 sum -18.483 14.691 15.914 28.472 Atomic orbital electron populations 1.20377 0.86774 1.03603 1.03083 1.20345 0.98426 0.86244 1.01544 1.26941 0.95200 1.04197 1.13663 1.84123 1.07061 1.01983 1.66741 1.26812 0.94144 0.98101 1.04653 1.18780 0.84319 0.94624 0.87662 0.85613 1.45860 1.36125 1.10743 1.43206 1.20511 0.82941 0.85088 0.81851 1.90717 1.65876 1.20979 1.60395 1.19831 0.83267 0.86260 0.82944 1.90745 1.67034 1.21118 1.61915 1.46234 1.35746 1.09526 1.41869 1.21965 0.87271 1.01784 0.89292 1.19353 0.96080 0.90180 0.97000 1.20961 1.18166 0.93221 1.23952 0.92218 1.25002 0.97380 0.95022 0.96862 1.69946 1.41323 0.98391 1.43351 0.86553 0.81866 0.77469 0.81526 1.20099 1.21230 1.20101 1.22622 0.92985 1.07514 0.96215 1.23034 0.95190 0.99397 1.03535 1.23361 1.01031 0.91744 1.04668 1.66045 1.04065 1.31924 1.15187 0.90508 0.90580 0.90354 0.80312 0.75078 0.75302 0.91792 0.91749 0.95626 0.95648 0.92695 0.86687 0.88474 0.88481 0.88572 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.31 36.01 0.37 -0.11 16 2 C 0.07 0.60 6.74 -84.23 -0.57 0.03 16 3 C -0.26 -1.98 11.13 29.12 0.32 -1.66 16 4 S 0.15 1.21 22.29 -107.50 -2.40 -1.19 16 5 C 0.04 0.43 6.28 -13.46 -0.08 0.34 16 6 C 0.25 2.72 2.94 -69.09 -0.20 2.52 16 7 H 0.13 1.52 7.58 -51.93 -0.39 1.13 16 8 N -0.70 -8.17 3.59 -55.37 -0.20 -8.37 16 9 C 0.51 7.27 6.72 -11.58 -0.08 7.19 16 10 O -0.51 -7.73 13.51 5.50 0.07 -7.66 16 11 C 0.50 8.21 7.89 -11.59 -0.09 8.12 16 12 O -0.53 -9.66 16.48 5.50 0.09 -9.57 16 13 N -0.68 -11.95 5.55 -60.73 -0.34 -12.29 16 14 C 0.12 2.41 5.61 -4.04 -0.02 2.39 16 15 C 0.01 0.28 5.09 -27.89 -0.14 0.13 16 16 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 C -0.17 -1.66 5.69 -90.62 -0.52 -2.17 16 25 C -0.17 -1.67 9.73 -26.73 -0.26 -1.93 16 26 C -0.17 -1.78 9.82 -26.73 -0.26 -2.05 16 27 N -0.46 -5.08 10.53 -8.06 -0.08 -5.16 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.41 4.52 7.27 -40.82 -0.30 4.23 16 33 H 0.41 6.81 7.95 -40.82 -0.32 6.49 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.12 1.00 8.11 -51.93 -0.42 0.58 16 40 H 0.10 1.04 6.67 -51.93 -0.35 0.69 16 41 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.12 1.52 5.02 -51.93 -0.26 1.26 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -30.92 378.56 -9.19 -40.10 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.81 Total: 7.66 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.94 Total: -0.18 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.12 Total: -50.96 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.16 Total: -17.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.40 Total: -1.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.92 -9.19 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346715821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.039 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds