Wall clock time and date at job start Tue Mar 31 2020 19:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32771 * 123.46257 * 2 1 4 4 S 1.75494 * 110.57740 * 180.23284 * 3 2 1 5 5 C 1.70448 * 92.44745 * 359.73822 * 4 3 2 6 6 C 1.36014 * 110.81229 * 359.97438 * 5 4 3 7 7 C 1.47195 * 123.45714 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99694 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00058 * 0.02942 * 7 6 5 10 10 C 1.46497 * 119.99826 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.78191 * 284.18545 * 11 10 9 13 13 C 1.53509 * 113.48021 * 153.37869 * 11 10 9 14 14 C 1.53511 * 83.57304 * 219.20785 * 13 11 10 15 15 N 1.47470 * 87.93427 * 26.02530 * 14 13 11 16 16 C 1.46909 * 111.00042 * 221.29752 * 15 14 13 17 17 C 1.50704 * 109.46843 * 294.01651 * 16 15 14 18 18 O 1.21293 * 119.99954 * 354.32971 * 17 16 15 19 19 N 1.34779 * 119.99882 * 174.33221 * 17 16 15 20 20 C 1.37088 * 119.99742 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00437 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99938 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99655 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47247 * 59.99817 * 24 22 20 26 26 H 1.48500 * 109.46841 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47032 * 299.99756 * 24 22 20 28 28 H 1.09003 * 109.46692 * 270.23691 * 1 2 3 29 29 H 1.09001 * 109.47056 * 30.23080 * 1 2 3 30 30 H 1.08998 * 109.47575 * 150.23205 * 1 2 3 31 31 H 1.08005 * 124.70867 * 359.93316 * 3 2 1 32 32 H 1.07995 * 124.59622 * 179.97438 * 5 4 3 33 33 H 0.96996 * 119.99802 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47629 * 59.99544 * 10 9 7 35 35 H 1.09002 * 109.46792 * 299.99602 * 10 9 7 36 36 H 1.08994 * 114.17315 * 105.55499 * 13 11 10 37 37 H 1.09005 * 114.34195 * 332.86820 * 13 11 10 38 38 H 1.08996 * 113.47410 * 271.25323 * 14 13 11 39 39 H 1.09000 * 113.52788 * 140.80119 * 14 13 11 40 40 H 1.08997 * 109.46944 * 54.01121 * 16 15 14 41 41 H 1.08994 * 109.47224 * 174.01072 * 16 15 14 42 42 H 0.97004 * 119.99765 * 359.97438 * 19 17 16 43 43 H 0.96998 * 119.99821 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2391 1.1076 0.0000 4 16 3.9499 0.7163 -0.0067 5 6 3.6411 -0.9600 -0.0016 6 6 2.3032 -1.2049 0.0054 7 6 1.7261 -2.5590 0.0105 8 8 0.5187 -2.7055 0.0163 9 7 2.5357 -3.6366 0.0090 10 6 1.9613 -4.9843 0.0135 11 6 3.0884 -6.0190 0.0112 12 1 3.5623 -6.1248 -0.9647 13 6 2.6900 -7.3587 0.6460 14 6 4.1125 -7.3124 1.2211 15 7 4.0500 -5.8428 1.1154 16 6 5.3217 -5.2958 0.6237 17 6 6.4015 -5.5374 1.6468 18 8 6.1192 -6.0156 2.7251 19 7 7.6809 -5.2220 1.3636 20 6 8.6631 -5.4414 2.2945 21 1 8.4116 -5.8664 3.2550 22 6 9.9821 -5.1158 2.0028 23 7 10.2880 -4.5981 0.8343 24 14 11.3203 -5.4139 3.2715 25 1 11.3731 -6.8600 3.6049 26 1 12.6304 -4.9856 2.7190 27 1 11.0213 -4.6336 4.4990 28 1 -0.3633 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5102 31 1 1.8375 2.1103 -0.0010 32 1 4.4043 -1.7241 -0.0037 33 1 3.4986 -3.5197 0.0041 34 1 1.3425 -5.1185 -0.8736 35 1 1.3499 -5.1156 0.9063 36 1 2.5249 -8.1615 -0.0725 37 1 1.9026 -7.2840 1.3961 38 1 4.8597 -7.7634 0.5682 39 1 4.1786 -7.6714 2.2482 40 1 5.5910 -5.7867 -0.3115 41 1 5.2150 -4.2244 0.4540 42 1 7.9067 -4.8399 0.5011 43 1 11.2086 -4.3704 0.6308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754478899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:00 Heat of formation + Delta-G solvation = -2.920155 kcal Electronic energy + Delta-G solvation = -26518.008299 eV Core-core repulsion = 22691.036235 eV Total energy + Delta-G solvation = -3826.972064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60759 -39.70937 -37.83589 -37.19566 -34.65306 -33.98934 -31.58322 -31.36544 -30.63124 -28.54345 -27.49437 -25.88188 -24.49425 -23.81174 -22.96503 -20.90419 -19.86219 -19.36256 -18.93011 -17.98947 -17.91927 -17.04875 -16.23495 -16.08967 -15.53084 -15.19740 -15.07030 -14.63190 -14.33553 -14.03520 -13.95159 -13.79297 -13.50252 -13.39743 -13.25730 -12.81860 -12.70459 -12.35405 -12.18793 -11.99070 -11.94009 -11.74164 -11.56177 -11.41077 -11.10895 -11.01603 -10.84881 -10.54011 -10.49344 -10.28220 -9.79904 -9.56714 -9.15380 -9.01334 -8.79454 -8.46597 -8.36541 -8.04725 -6.49356 -3.90389 0.62643 1.40393 1.78486 1.85716 3.09845 3.14905 3.21323 3.25500 3.32018 3.78820 3.93848 4.16031 4.42816 4.50400 4.72832 4.84247 4.88966 4.97853 5.02787 5.15054 5.17302 5.33910 5.37855 5.40198 5.45213 5.53320 5.57361 5.65609 5.70294 5.78381 5.84060 5.85444 6.04363 6.09102 6.15053 6.22373 6.34628 6.44139 6.54728 7.13256 7.46452 7.47917 7.96970 8.19178 8.52295 9.09945 9.44486 9.95882 10.68102 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.003244 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.038468 B = 8629.879936 C =11030.124881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.051 4.051 3 C -0.250 4.250 4 S 0.193 5.807 5 C -0.206 4.206 6 C -0.156 4.156 7 C 0.578 3.422 8 O -0.539 6.539 9 N -0.716 5.716 10 C 0.143 3.857 11 C 0.003 3.997 12 H 0.083 0.917 13 C -0.136 4.136 14 C 0.016 3.984 15 N -0.437 5.437 16 C 0.008 3.992 17 C 0.440 3.560 18 O -0.576 6.576 19 N -0.562 5.562 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.391 0.609 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 6.806 -7.626 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.385 4.385 4 S 0.461 5.539 5 C -0.345 4.345 6 C -0.174 4.174 7 C 0.364 3.636 8 O -0.418 6.418 9 N -0.367 5.367 10 C 0.019 3.981 11 C -0.108 4.108 12 H 0.101 0.899 13 C -0.174 4.174 14 C -0.113 4.113 15 N -0.160 5.160 16 C -0.124 4.124 17 C 0.225 3.775 18 O -0.459 6.459 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.185 0.815 32 H 0.187 0.813 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.224 0.776 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.411 7.746 -6.392 17.565 hybrid contribution 0.762 -1.058 -0.690 1.475 sum -13.649 6.689 -7.082 16.769 Atomic orbital electron populations 1.20641 0.88739 1.03527 1.02871 1.19841 0.97479 0.89840 0.99065 1.25334 0.96673 1.02593 1.13915 1.83142 1.05223 0.96655 1.68898 1.25723 0.99699 1.03165 1.05881 1.20161 0.92026 0.94385 1.10832 1.17556 0.86258 0.83567 0.76192 1.90718 1.14002 1.86533 1.50571 1.45820 1.10257 1.05785 1.74881 1.21336 0.94835 0.79516 1.02418 1.23856 0.95454 0.95680 0.95773 0.89935 1.23204 0.98568 0.95443 1.00223 1.23538 0.95129 0.89435 1.03173 1.68907 1.06340 1.12602 1.28164 1.22547 0.91790 1.00840 0.97258 1.19597 0.83333 0.85561 0.88965 1.90543 1.81824 1.48711 1.24857 1.41860 1.05297 1.55564 1.17122 1.19649 0.86129 1.39453 0.97802 0.87953 1.25261 0.98420 0.96833 0.97263 1.69596 1.20408 1.42832 1.21384 0.85918 0.79201 0.78992 0.80148 1.19879 1.20917 1.19822 0.91075 0.92053 0.88999 0.81506 0.81291 0.76514 0.91114 0.90598 0.90493 0.88610 0.91567 0.88755 0.92543 0.90070 0.77558 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.54 36.01 0.34 -0.71 16 2 C -0.05 -0.60 6.01 -104.06 -0.63 -1.22 16 3 C -0.25 -2.44 10.91 28.86 0.31 -2.13 16 4 S 0.19 1.87 23.02 -107.50 -2.47 -0.61 16 5 C -0.21 -2.34 10.38 29.93 0.31 -2.03 16 6 C -0.16 -2.00 5.98 -104.63 -0.63 -2.62 16 7 C 0.58 8.20 7.79 -12.62 -0.10 8.10 16 8 O -0.54 -8.75 14.21 5.25 0.07 -8.68 16 9 N -0.72 -9.11 5.43 -61.46 -0.33 -9.44 16 10 C 0.14 1.70 5.82 -4.04 -0.02 1.67 16 11 C 0.00 0.03 3.25 -71.45 -0.23 -0.20 16 12 H 0.08 0.86 7.64 -51.93 -0.40 0.46 16 13 C -0.14 -1.48 8.00 -26.20 -0.21 -1.69 16 14 C 0.02 0.23 6.35 -7.56 -0.05 0.19 16 15 N -0.44 -6.76 5.74 -237.99 -1.37 -8.13 16 16 C 0.01 0.13 5.10 -4.97 -0.03 0.10 16 17 C 0.44 9.95 7.47 -10.98 -0.08 9.87 16 18 O -0.58 -15.14 14.98 5.55 0.08 -15.06 16 19 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 20 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 21 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 22 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 23 N -0.90 -23.80 13.05 55.50 0.72 -23.08 16 24 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.09 1.14 6.03 -51.93 -0.31 0.82 16 31 H 0.17 1.21 8.06 -52.48 -0.42 0.78 16 32 H 0.17 1.72 7.01 -52.49 -0.37 1.35 16 33 H 0.40 4.80 4.82 -40.82 -0.20 4.61 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.02 7.94 -51.93 -0.41 0.60 16 38 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 39 H 0.09 1.59 7.97 -51.93 -0.41 1.17 16 40 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16 41 H 0.08 1.18 6.55 -51.93 -0.34 0.84 16 42 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -32.33 369.58 -9.64 -41.97 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -5.60 Total: 14.00 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.24 Total: 1.56 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -1.03 Total: -54.38 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.16 Total: -23.73 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.61 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.33 -9.64 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754478899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.054 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds