Wall clock time and date at job start Tue Mar 31 2020 19:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32771 * 123.46257 * 2 1 4 4 S 1.75494 * 110.57740 * 180.23284 * 3 2 1 5 5 C 1.70448 * 92.44745 * 359.73822 * 4 3 2 6 6 C 1.36014 * 110.81229 * 359.97438 * 5 4 3 7 7 C 1.47195 * 123.45714 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99694 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00058 * 0.02942 * 7 6 5 10 10 C 1.46497 * 119.99826 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.78191 * 284.18545 * 11 10 9 13 13 C 1.53509 * 113.48021 * 153.37869 * 11 10 9 14 14 C 1.53511 * 83.57304 * 219.20785 * 13 11 10 15 15 N 1.47470 * 87.93427 * 26.02530 * 14 13 11 16 16 C 1.46909 * 111.00042 * 221.29752 * 15 14 13 17 17 C 1.50704 * 109.46843 * 294.01651 * 16 15 14 18 18 O 1.21293 * 119.99954 * 354.32971 * 17 16 15 19 19 N 1.34779 * 119.99882 * 174.33221 * 17 16 15 20 20 C 1.37088 * 119.99742 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00437 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99938 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99655 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00165 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47247 * 59.99817 * 24 22 20 26 26 H 1.48500 * 109.46841 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47032 * 299.99756 * 24 22 20 28 28 H 1.09003 * 109.46692 * 270.23691 * 1 2 3 29 29 H 1.09001 * 109.47056 * 30.23080 * 1 2 3 30 30 H 1.08998 * 109.47575 * 150.23205 * 1 2 3 31 31 H 1.08005 * 124.70867 * 359.93316 * 3 2 1 32 32 H 1.07995 * 124.59622 * 179.97438 * 5 4 3 33 33 H 0.96996 * 119.99802 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47629 * 59.99544 * 10 9 7 35 35 H 1.09002 * 109.46792 * 299.99602 * 10 9 7 36 36 H 1.08994 * 114.17315 * 105.55499 * 13 11 10 37 37 H 1.09005 * 114.34195 * 332.86820 * 13 11 10 38 38 H 1.08996 * 113.47410 * 271.25323 * 14 13 11 39 39 H 1.09000 * 113.52788 * 140.80119 * 14 13 11 40 40 H 1.08997 * 109.46944 * 54.01121 * 16 15 14 41 41 H 1.08994 * 109.47224 * 174.01072 * 16 15 14 42 42 H 0.97004 * 119.99765 * 359.97438 * 19 17 16 43 43 H 0.96998 * 119.99821 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2391 1.1076 0.0000 4 16 3.9499 0.7163 -0.0067 5 6 3.6411 -0.9600 -0.0016 6 6 2.3032 -1.2049 0.0054 7 6 1.7261 -2.5590 0.0105 8 8 0.5187 -2.7055 0.0163 9 7 2.5357 -3.6366 0.0090 10 6 1.9613 -4.9843 0.0135 11 6 3.0884 -6.0190 0.0112 12 1 3.5623 -6.1248 -0.9647 13 6 2.6900 -7.3587 0.6460 14 6 4.1125 -7.3124 1.2211 15 7 4.0500 -5.8428 1.1154 16 6 5.3217 -5.2958 0.6237 17 6 6.4015 -5.5374 1.6468 18 8 6.1192 -6.0156 2.7251 19 7 7.6809 -5.2220 1.3636 20 6 8.6631 -5.4414 2.2945 21 1 8.4116 -5.8664 3.2550 22 6 9.9821 -5.1158 2.0028 23 7 10.2880 -4.5981 0.8343 24 14 11.3203 -5.4139 3.2715 25 1 11.3731 -6.8600 3.6049 26 1 12.6304 -4.9856 2.7190 27 1 11.0213 -4.6336 4.4990 28 1 -0.3633 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5102 31 1 1.8375 2.1103 -0.0010 32 1 4.4043 -1.7241 -0.0037 33 1 3.4986 -3.5197 0.0041 34 1 1.3425 -5.1185 -0.8736 35 1 1.3499 -5.1156 0.9063 36 1 2.5249 -8.1615 -0.0725 37 1 1.9026 -7.2840 1.3961 38 1 4.8597 -7.7634 0.5682 39 1 4.1786 -7.6714 2.2482 40 1 5.5910 -5.7867 -0.3115 41 1 5.2150 -4.2244 0.4540 42 1 7.9067 -4.8399 0.5011 43 1 11.2086 -4.3704 0.6308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754478899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:59 Heat of formation + Delta-G solvation = -27.309045 kcal Electronic energy + Delta-G solvation = -26519.065880 eV Core-core repulsion = 22691.036235 eV Total energy + Delta-G solvation = -3828.029645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73587 -40.78290 -39.56883 -38.11078 -36.00635 -35.65683 -33.36135 -32.45405 -31.88361 -29.52074 -28.34803 -27.56681 -25.45282 -25.36341 -23.96272 -21.86515 -21.12512 -20.84960 -19.95190 -19.85655 -18.73700 -18.00939 -17.80367 -17.26027 -16.72388 -16.53993 -16.26595 -16.22937 -15.61919 -15.59878 -15.12906 -14.95419 -14.60044 -14.38197 -14.11605 -14.09755 -13.79376 -13.58722 -13.54870 -13.14420 -13.01178 -12.91745 -12.81389 -12.78286 -12.46947 -12.38592 -12.14782 -11.93367 -11.81989 -11.66037 -11.49120 -10.84787 -10.34391 -10.15851 -10.03750 -9.86310 -9.80385 -9.27336 -8.48717 -5.97081 -0.24031 0.61445 0.97180 0.97465 1.37624 1.40695 1.50715 2.00528 2.13359 2.26985 2.31774 2.81613 3.17269 3.22626 3.54923 3.68064 3.77856 3.89566 4.08120 4.14880 4.20501 4.24372 4.33371 4.36245 4.41775 4.49347 4.63640 4.65290 4.71620 4.83768 4.86268 4.88898 4.99395 5.01110 5.18448 5.28315 5.30900 5.39335 5.45478 5.58595 5.89626 6.07074 6.45797 6.57863 7.10847 7.16354 7.53114 8.09165 8.68134 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.003244 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.038468 B = 8629.879936 C =11030.124881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.077 4.077 3 C -0.241 4.241 4 S 0.229 5.771 5 C -0.217 4.217 6 C -0.179 4.179 7 C 0.573 3.427 8 O -0.568 6.568 9 N -0.712 5.712 10 C 0.144 3.856 11 C 0.015 3.985 12 H 0.106 0.894 13 C -0.115 4.115 14 C 0.006 3.994 15 N -0.464 5.464 16 C 0.020 3.980 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.570 5.570 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.917 5.917 24 Si 0.988 3.012 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.176 0.824 33 H 0.402 0.598 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 7.711 -8.976 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.376 4.376 4 S 0.497 5.503 5 C -0.355 4.355 6 C -0.198 4.198 7 C 0.360 3.640 8 O -0.449 6.449 9 N -0.363 5.363 10 C 0.020 3.980 11 C -0.094 4.094 12 H 0.124 0.876 13 C -0.153 4.153 14 C -0.123 4.123 15 N -0.188 5.188 16 C -0.112 4.112 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.208 5.208 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.558 5.558 24 Si 0.812 3.188 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.194 0.806 33 H 0.239 0.761 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.308 8.655 -7.770 18.439 hybrid contribution 0.723 -1.308 -0.253 1.516 sum -13.585 7.347 -8.023 17.404 Atomic orbital electron populations 1.20580 0.88469 1.03595 1.02660 1.20018 0.98019 0.90110 1.00604 1.25674 0.96691 1.03329 1.11929 1.83037 1.04836 0.94953 1.67494 1.25922 0.99414 1.04705 1.05486 1.20234 0.92826 0.94156 1.12595 1.17857 0.86052 0.84407 0.75733 1.90697 1.15108 1.87029 1.52087 1.45827 1.10324 1.05896 1.74294 1.21373 0.94926 0.79213 1.02457 1.23881 0.94164 0.95729 0.95655 0.87614 1.23148 0.95864 0.95931 1.00329 1.23541 0.97954 0.89144 1.01629 1.68910 1.06291 1.12997 1.30562 1.22458 0.90225 1.02648 0.95862 1.20661 0.83838 0.83392 0.89487 1.90517 1.82591 1.50058 1.27172 1.41905 1.05702 1.56237 1.16942 1.19579 0.87682 1.41236 0.97861 0.90553 1.25964 0.99731 0.96125 0.99053 1.69647 1.21119 1.42738 1.22275 0.85054 0.77061 0.78733 0.77919 1.19814 1.19399 1.19858 0.91454 0.89691 0.91146 0.78818 0.80629 0.76143 0.89629 0.92017 0.87330 0.88495 0.91556 0.92005 0.89920 0.87914 0.76954 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.96 9.54 71.24 0.68 -1.28 16 2 C -0.08 -1.72 6.01 -19.46 -0.12 -1.84 16 3 C -0.24 -4.19 10.91 66.64 0.73 -3.46 16 4 S 0.23 3.96 23.02 -56.49 -1.30 2.66 16 5 C -0.22 -4.65 10.38 67.30 0.70 -3.96 16 6 C -0.18 -4.50 5.98 -19.87 -0.12 -4.62 16 7 C 0.57 16.15 7.79 86.60 0.67 16.82 16 8 O -0.57 -18.67 14.21 -4.13 -0.06 -18.73 16 9 N -0.71 -17.44 5.43 -466.59 -2.53 -19.97 16 10 C 0.14 3.20 5.82 86.38 0.50 3.70 16 11 C 0.02 0.32 3.25 42.18 0.14 0.45 16 12 H 0.11 1.80 7.64 -2.39 -0.02 1.78 16 13 C -0.11 -2.24 8.00 30.94 0.25 -1.99 16 14 C 0.01 0.18 6.35 83.57 0.53 0.71 16 15 N -0.46 -13.92 5.74 -906.85 -5.21 -19.12 16 16 C 0.02 0.63 5.10 85.56 0.44 1.06 16 17 C 0.44 20.05 7.47 87.66 0.66 20.70 16 18 O -0.62 -33.51 14.98 -3.07 -0.05 -33.55 16 19 N -0.57 -28.10 5.29 -306.98 -1.62 -29.73 16 20 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 21 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 22 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 23 N -0.92 -47.91 13.05 21.67 0.28 -47.63 16 24 Si 0.99 42.11 29.55 68.60 2.03 44.13 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.07 1.77 6.03 -2.39 -0.01 1.76 16 31 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.18 3.36 7.01 -2.91 -0.02 3.34 16 33 H 0.40 9.13 4.82 -92.71 -0.45 8.68 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.56 7.88 -2.39 -0.02 1.54 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.90 7.94 -2.38 -0.02 1.88 16 38 H 0.07 1.89 7.83 -2.39 -0.02 1.87 16 39 H 0.06 2.17 7.97 -2.39 -0.02 2.15 16 40 H 0.08 2.20 7.56 -2.39 -0.02 2.18 16 41 H 0.10 2.80 6.55 -2.39 -0.02 2.79 16 42 H 0.40 18.34 7.90 -92.71 -0.73 17.61 16 43 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -71.92 369.58 -2.24 -74.15 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.11 Total: 39.17 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.33 Total: 8.62 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -9.08 Total: -116.45 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.10 Total: -52.28 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.30 Total: 2.66 kcal Total: -71.92 -2.24 -74.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754478899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds