Wall clock time and date at job start Tue Mar 31 2020 20:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47126 * 2 1 4 4 N 1.46494 * 109.47192 * 299.99950 * 3 2 1 5 5 C 1.36940 * 120.00099 * 179.72420 * 4 3 2 6 6 H 1.08000 * 119.99644 * 0.27687 * 5 4 3 7 7 C 1.38813 * 119.99990 * 180.27744 * 5 4 3 8 8 N 1.31617 * 119.99988 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99739 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46877 * 89.99965 * 9 7 5 11 11 H 1.48496 * 109.47428 * 209.99989 * 9 7 5 12 12 H 1.48497 * 109.47521 * 330.00404 * 9 7 5 13 13 N 1.46506 * 109.47165 * 240.00237 * 2 1 3 14 14 C 1.34773 * 120.00318 * 174.50655 * 13 2 1 15 15 O 1.21682 * 119.99643 * 5.23413 * 14 13 2 16 16 C 1.46727 * 120.00224 * 185.24014 * 14 13 2 17 17 C 1.34872 * 125.05802 * 180.02562 * 16 14 13 18 18 C 1.38944 * 113.65616 * 179.97438 * 17 16 14 19 19 C 1.47332 * 122.96227 * 179.97438 * 18 17 16 20 20 N 1.34775 * 120.00122 * 179.97438 * 19 18 17 21 21 O 1.21616 * 120.00239 * 359.97438 * 19 18 17 22 22 C 1.36666 * 114.07451 * 359.97438 * 18 17 16 23 23 S 1.70593 * 110.53066 * 359.74775 * 22 18 17 24 24 C 1.52999 * 109.47300 * 120.00115 * 2 1 3 25 25 C 1.53003 * 117.49734 * 122.32816 * 24 2 1 26 26 C 1.53005 * 117.49710 * 53.67243 * 24 2 1 27 27 H 1.09002 * 109.46702 * 59.99563 * 1 2 3 28 28 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46864 * 299.99772 * 1 2 3 30 30 H 1.08998 * 109.46744 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47129 * 60.00586 * 3 2 1 32 32 H 0.96998 * 120.00054 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99891 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99421 * 354.50627 * 13 2 1 35 35 H 1.08003 * 123.17571 * 359.97438 * 17 16 14 36 36 H 0.97008 * 119.99828 * 0.02562 * 20 19 18 37 37 H 0.96996 * 120.00582 * 180.02562 * 20 19 18 38 38 H 1.08003 * 124.73132 * 180.02562 * 22 18 17 39 39 H 1.09002 * 115.55283 * 267.99903 * 24 2 1 40 40 H 1.08999 * 117.50207 * 0.02562 * 25 24 2 41 41 H 1.09003 * 117.49591 * 145.02153 * 25 24 2 42 42 H 1.08999 * 117.49421 * 214.97959 * 26 24 2 43 43 H 1.09001 * 117.49749 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1332 -1.1961 5 6 1.8779 3.4458 -1.4100 6 1 2.4988 3.9707 -0.6990 7 6 1.4104 4.1019 -2.5405 8 7 0.6533 3.4623 -3.4066 9 14 1.8548 5.8927 -2.8318 10 1 3.1156 5.9691 -3.6126 11 1 0.7631 6.5569 -3.5881 12 1 2.0391 6.5757 -1.5262 13 7 2.0184 -0.6906 -1.1962 14 6 3.3383 -0.7179 -1.4670 15 8 4.1324 -0.2526 -0.6710 16 6 3.8179 -1.3085 -2.7216 17 6 5.1114 -1.3900 -3.0948 18 6 5.2978 -1.9960 -4.3312 19 6 6.6269 -2.1905 -4.9363 20 7 6.7387 -2.7868 -6.1398 21 8 7.6232 -1.8130 -4.3499 22 6 4.1394 -2.3958 -4.9364 23 16 2.7932 -2.0227 -3.9573 24 6 2.0400 -0.7213 1.2492 25 6 2.9598 -1.9265 1.0430 26 6 1.5175 -2.1352 1.5114 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 0.8900 32 1 0.9938 1.6619 -1.8344 33 1 0.3263 3.9209 -4.1964 34 1 1.3916 -1.1282 -1.7934 35 1 5.9256 -1.0191 -2.4898 36 1 5.9439 -3.0876 -6.6078 37 1 7.6137 -2.9153 -6.5381 38 1 4.0845 -2.8842 -5.8981 39 1 2.2291 -0.0861 2.1146 40 1 3.2019 -2.2053 0.0175 41 1 3.7537 -2.0843 1.7730 42 1 1.3632 -2.4303 2.5493 43 1 0.8101 -2.5514 0.7941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495303521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:44 Heat of formation + Delta-G solvation = 10.361253 kcal Electronic energy + Delta-G solvation = -27362.197416 eV Core-core repulsion = 23535.801278 eV Total energy + Delta-G solvation = -3826.396138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44906 -39.87111 -37.60175 -36.46130 -34.96050 -33.94077 -33.39195 -31.58740 -29.99272 -29.27324 -26.05533 -25.64144 -23.90369 -23.29157 -22.06927 -21.32921 -20.61222 -19.38166 -18.98155 -18.65766 -17.28787 -17.20788 -17.08648 -15.99590 -15.54155 -15.41529 -15.00360 -14.71493 -14.40484 -14.23589 -13.80359 -13.53626 -13.30645 -13.22717 -12.89022 -12.74292 -12.68265 -12.12769 -12.08248 -11.87270 -11.35035 -11.28791 -11.05995 -10.85422 -10.77839 -10.72749 -10.23239 -10.19671 -10.06566 -9.94111 -9.88627 -9.64768 -9.38152 -9.04813 -8.77504 -8.73582 -8.61692 -6.81263 -5.71424 -2.97102 0.29505 1.27096 1.63466 1.67021 3.12919 3.20015 3.42762 3.48148 3.53524 3.54769 3.58282 4.05070 4.57817 4.63820 4.81291 4.88469 4.96818 5.07589 5.14076 5.19594 5.42686 5.54879 5.65262 5.65475 5.71916 5.79298 5.93402 6.00844 6.06696 6.13396 6.18605 6.27608 6.31760 6.38536 6.53786 6.58138 6.63341 6.91029 7.07668 7.13717 7.77302 7.79377 8.05426 8.48416 8.51536 9.60049 10.17381 10.53236 11.51934 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.008427 B = 0.004617 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.950399 B = 6062.596948 C = 8162.228126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.228 4.228 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.282 1.282 13 N -0.711 5.711 14 C 0.598 3.402 15 O -0.506 6.506 16 C -0.253 4.253 17 C -0.020 4.020 18 C -0.162 4.162 19 C 0.584 3.416 20 N -0.852 5.852 21 O -0.535 6.535 22 C -0.213 4.213 23 S 0.255 5.745 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.186 4.186 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.381 0.619 33 H 0.253 0.747 34 H 0.391 0.609 35 H 0.163 0.837 36 H 0.399 0.601 37 H 0.405 0.595 38 H 0.174 0.826 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 -19.652 -2.315 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.116 3.884 3 C 0.012 3.988 4 N -0.371 5.371 5 C -0.360 4.360 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.362 5.362 14 C 0.383 3.617 15 O -0.382 6.382 16 C -0.374 4.374 17 C -0.051 4.051 18 C -0.181 4.181 19 C 0.368 3.632 20 N -0.416 5.416 21 O -0.412 6.412 22 C -0.352 4.352 23 S 0.524 5.476 24 C -0.163 4.163 25 C -0.195 4.195 26 C -0.223 4.223 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.215 0.785 33 H 0.062 0.938 34 H 0.225 0.775 35 H 0.181 0.819 36 H 0.228 0.772 37 H 0.236 0.764 38 H 0.191 0.809 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.122 -19.012 -1.312 19.090 hybrid contribution 1.251 0.722 -1.328 1.962 sum 2.373 -18.290 -2.640 18.631 Atomic orbital electron populations 1.21996 0.92929 1.01421 1.04230 1.20112 0.93805 0.92583 0.81894 1.21115 0.98935 0.87644 0.91096 1.42246 1.61315 1.10396 1.23095 1.19236 1.24833 0.87448 1.04451 0.91340 1.24652 1.00772 0.98131 0.97505 1.69642 1.39730 1.35976 1.13317 0.86218 0.77348 0.85181 0.77674 1.21882 1.21901 1.20816 1.45852 1.06530 1.56727 1.27067 1.16610 0.82735 0.78569 0.83781 1.90827 1.54826 1.45337 1.47190 1.24401 0.97738 1.13244 1.01976 1.20289 0.96436 0.94321 0.94049 1.18990 0.93270 1.08316 0.97502 1.17638 0.88032 0.76694 0.80805 1.43658 1.12790 1.63869 1.21256 1.90859 1.38402 1.49831 1.62075 1.26033 0.97604 1.06138 1.05475 1.83032 1.07022 1.49582 1.07993 1.22533 1.04163 0.90285 0.99327 1.22919 0.92513 1.01951 1.02117 1.22992 0.97793 0.99941 1.01540 0.90666 0.92817 0.90783 0.93072 0.95759 0.78471 0.93768 0.77521 0.81938 0.77210 0.76389 0.80887 0.87284 0.89114 0.89452 0.89336 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.18 37.16 0.30 -1.83 16 2 C 0.20 3.27 0.55 -131.81 -0.07 3.20 16 3 C 0.14 2.98 4.83 -4.04 -0.02 2.96 16 4 N -0.73 -18.32 5.18 -59.91 -0.31 -18.63 16 5 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -28.02 13.06 55.49 0.72 -27.29 16 9 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 10 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.71 -11.03 4.18 -48.88 -0.20 -11.23 16 14 C 0.60 10.40 5.05 -12.83 -0.06 10.34 16 15 O -0.51 -10.36 12.72 5.20 0.07 -10.30 16 16 C -0.25 -3.82 6.37 -37.35 -0.24 -4.06 16 17 C -0.02 -0.31 9.47 -40.51 -0.38 -0.70 16 18 C -0.16 -2.04 5.82 -106.50 -0.62 -2.66 16 19 C 0.58 7.40 8.06 -12.56 -0.10 7.30 16 20 N -0.85 -6.35 8.84 30.41 0.27 -6.08 16 21 O -0.53 -9.10 17.52 5.26 0.09 -9.01 16 22 C -0.21 -1.99 10.41 30.16 0.31 -1.68 16 23 S 0.26 2.71 22.10 -107.50 -2.38 0.34 16 24 C -0.14 -2.08 4.81 -90.62 -0.44 -2.51 16 25 C -0.16 -2.20 8.28 -26.69 -0.22 -2.42 16 26 C -0.19 -2.18 9.68 -26.69 -0.26 -2.43 16 27 H 0.07 1.25 6.86 -51.93 -0.36 0.89 16 28 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 1.23 5.95 -51.93 -0.31 0.92 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 9.78 6.35 -40.82 -0.26 9.52 16 33 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.39 5.17 7.57 -40.82 -0.31 4.86 16 35 H 0.16 2.75 7.95 -52.48 -0.42 2.33 16 36 H 0.40 1.70 7.29 -40.82 -0.30 1.40 16 37 H 0.41 2.46 8.93 -40.82 -0.36 2.10 16 38 H 0.17 0.88 6.99 -52.48 -0.37 0.51 16 39 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 40 H 0.09 1.34 5.12 -51.93 -0.27 1.08 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.97 7.21 -51.93 -0.37 0.60 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -36.37 365.39 -8.63 -45.00 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.33 Total: 15.43 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.04 Total: -1.72 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.48 Total: -63.23 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.16 Total: -19.31 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.38 Total: 0.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.37 -8.63 -45.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495303521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.360 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds