Wall clock time and date at job start Tue Mar 31 2020 19:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47030 * 2 1 4 4 N 1.30289 * 124.97132 * 304.95537 * 3 2 1 5 5 C 1.34651 * 109.66437 * 179.77046 * 4 3 2 6 6 C 1.40821 * 107.26661 * 0.42177 * 5 4 3 7 7 N 1.32117 * 120.46450 * 179.79720 * 6 5 4 8 8 C 1.31722 * 121.95322 * 359.72726 * 7 6 5 9 9 C 1.38324 * 121.55429 * 359.97438 * 8 7 6 10 10 C 1.39669 * 119.37106 * 0.02562 * 9 8 7 11 11 C 1.47716 * 121.07759 * 180.02562 * 10 9 8 12 12 O 1.21563 * 119.99900 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99920 * 359.97438 * 11 10 9 14 14 C 1.39370 * 120.00023 * 185.03952 * 13 11 10 15 15 C 1.38622 * 119.58394 * 185.76472 * 14 13 11 16 16 C 1.40802 * 118.79259 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99420 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00320 * 207.33316 * 17 16 15 19 19 C 1.40034 * 119.99929 * 27.33436 * 17 16 15 20 20 N 1.30739 * 120.00237 * 18.64583 * 19 17 16 21 21 Si 1.86804 * 119.99854 * 198.64783 * 19 17 16 22 22 H 1.48496 * 109.47297 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47167 * 119.99732 * 21 19 17 24 24 H 1.48496 * 109.46841 * 239.99766 * 21 19 17 25 25 C 1.41174 * 118.01151 * 0.02562 * 16 15 14 26 26 C 1.37587 * 119.01987 * 359.97438 * 25 16 15 27 27 N 1.32081 * 121.11483 * 0.02562 * 26 25 16 28 28 N 1.35996 * 124.97359 * 125.00253 * 3 2 1 29 29 H 0.96994 * 126.35151 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46857 * 300.00141 * 1 2 3 31 31 H 1.08996 * 109.47327 * 59.99889 * 1 2 3 32 32 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46761 * 239.99670 * 2 1 3 34 34 H 1.09001 * 109.46968 * 119.99814 * 2 1 3 35 35 H 1.08000 * 119.22780 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.32147 * 180.02562 * 9 8 7 37 37 H 0.97003 * 120.00060 * 5.03721 * 13 11 10 38 38 H 1.08004 * 120.60141 * 0.02562 * 15 14 13 39 39 H 0.96996 * 120.00493 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.49185 * 180.02562 * 25 16 15 41 41 H 1.08002 * 119.44409 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7045 2.3287 -0.8750 5 6 2.3255 3.4867 -0.5808 6 6 3.1068 3.2616 0.5690 7 7 3.8352 4.2355 1.0851 8 6 3.8665 5.4399 0.5526 9 6 3.1359 5.7497 -0.5803 10 6 2.3448 4.7647 -1.1758 11 6 1.5498 5.0541 -2.3867 12 8 0.8682 4.1818 -2.8892 13 7 1.5800 6.2852 -2.9344 14 6 0.7510 6.5887 -4.0129 15 6 0.8734 7.8158 -4.6461 16 6 0.0277 8.1047 -5.7341 17 6 0.1130 9.3428 -6.4148 18 1 -0.7558 9.7456 -6.9142 19 6 1.3240 10.0455 -6.4409 20 7 2.4444 9.4275 -6.1724 21 14 1.3387 11.8660 -6.8593 22 1 -0.0492 12.3251 -7.1205 23 1 1.9064 12.6312 -5.7202 24 1 2.1704 12.0892 -8.0690 25 6 -0.9078 7.1227 -6.1258 26 6 -0.9554 5.9333 -5.4359 27 7 -0.1441 5.7007 -4.4199 28 7 2.8948 1.9426 0.9128 29 1 3.2880 1.4742 1.6657 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.4778 6.2033 1.0108 36 1 3.1767 6.7437 -1.0005 37 1 2.1788 6.9601 -2.5780 38 1 1.6046 8.5367 -4.3114 39 1 3.2832 9.9142 -6.1901 40 1 -1.5757 7.3021 -6.9554 41 1 -1.6682 5.1771 -5.7300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001629861338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:07 Heat of formation + Delta-G solvation = 90.124682 kcal Electronic energy + Delta-G solvation = -27461.482575 eV Core-core repulsion = 23535.394038 eV Total energy + Delta-G solvation = -3926.088537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57771 -39.68955 -38.51646 -37.56811 -34.35560 -33.93020 -33.69391 -33.64381 -31.53079 -30.54242 -29.30992 -28.52199 -25.98494 -25.36033 -23.81936 -23.19858 -22.00494 -21.47939 -20.89535 -20.02350 -18.41201 -17.93598 -17.43158 -17.11365 -16.05498 -15.91349 -15.29463 -15.04746 -14.80329 -14.64528 -14.33219 -14.22911 -14.18924 -13.88919 -13.71562 -13.15471 -12.83448 -12.62812 -12.56334 -12.35467 -12.24400 -11.87377 -11.47963 -11.44603 -11.24953 -11.12367 -10.93493 -10.88716 -10.28841 -10.17283 -9.75444 -9.69222 -9.31735 -9.14814 -9.01541 -8.52506 -7.98431 -7.72877 -7.02438 -6.83814 -4.59787 0.33557 1.02007 2.28208 2.56154 2.68624 2.77673 3.02584 3.08052 3.20164 3.39238 3.45291 3.77968 3.85970 4.01508 4.23239 4.42598 4.65697 4.67301 4.70813 4.81344 4.91578 4.96852 5.21204 5.39051 5.53670 5.57515 5.67051 5.70600 5.79425 5.83334 6.06194 6.09724 6.40682 6.58009 6.64105 6.80938 6.90058 6.93503 7.07493 7.37558 7.44638 7.64591 7.68958 7.77729 7.91557 8.19572 8.41808 8.70100 8.74631 8.86915 9.68400 10.07639 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002739 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.397689 B =10219.638588 C =11634.682201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C 0.293 3.707 4 N -0.449 5.449 5 C 0.056 3.944 6 C 0.232 3.768 7 N -0.473 5.473 8 C 0.132 3.868 9 C -0.154 4.154 10 C -0.025 4.025 11 C 0.535 3.465 12 O -0.439 6.439 13 N -0.653 5.653 14 C 0.341 3.659 15 C -0.240 4.240 16 C 0.148 3.852 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.081 3.919 20 N -0.787 5.787 21 Si 0.908 3.092 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.282 4.282 26 C 0.121 3.879 27 N -0.553 5.553 28 N -0.587 5.587 29 H 0.426 0.574 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.406 0.594 38 H 0.121 0.879 39 H 0.282 0.718 40 H 0.103 0.897 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -10.130 15.033 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C 0.026 3.974 4 N -0.168 5.168 5 C -0.068 4.068 6 C -0.005 4.005 7 N -0.187 5.187 8 C -0.034 4.034 9 C -0.177 4.177 10 C -0.038 4.038 11 C 0.318 3.682 12 O -0.306 6.306 13 N -0.300 5.300 14 C 0.116 3.884 15 C -0.266 4.266 16 C 0.139 3.861 17 C -0.492 4.492 18 H 0.101 0.899 19 C -0.139 4.139 20 N -0.412 5.412 21 Si 0.732 3.268 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.306 4.306 26 C -0.033 4.033 27 N -0.273 5.273 28 N -0.202 5.202 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.190 0.810 36 H 0.168 0.832 37 H 0.241 0.759 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.320 -11.919 15.169 19.769 hybrid contribution 0.998 2.216 -0.103 2.433 sum 5.318 -9.702 15.066 18.692 Atomic orbital electron populations 1.21722 0.92526 1.02455 1.03800 1.20182 0.97880 0.85815 1.04193 1.24007 0.89969 0.97641 0.85792 1.70323 1.23988 0.98272 1.24202 1.19226 0.98493 0.93728 0.95310 1.18878 0.99167 0.86944 0.95497 1.66182 1.19851 0.99914 1.32705 1.22466 0.96753 0.91500 0.92656 1.22248 0.97743 1.00062 0.97642 1.19932 0.97065 0.91017 0.95752 1.17988 0.83203 0.83280 0.83736 1.90926 1.36791 1.43675 1.59217 1.43285 1.41016 1.13278 1.32451 1.18086 0.90858 0.91305 0.88134 1.21387 1.08000 0.96669 1.00535 1.17544 0.88314 0.91658 0.88554 1.19563 0.96709 1.02926 1.29952 0.89874 1.25930 0.94903 1.00357 0.92694 1.69800 0.98889 1.37449 1.35046 0.86266 0.79700 0.82043 0.78781 1.18279 1.19613 1.19934 1.21923 1.07527 0.96201 1.04957 1.21769 0.95307 0.95007 0.91224 1.67204 1.08710 1.33040 1.18305 1.42763 1.41189 1.08375 1.27866 0.73429 0.92606 0.90435 0.91428 0.88088 0.89829 0.81038 0.83243 0.75862 0.86135 0.90750 0.87896 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.85 37.16 0.37 -0.84 16 2 C -0.04 -0.31 6.56 -27.88 -0.18 -0.50 16 3 C 0.29 3.51 7.37 -154.72 -1.14 2.37 16 4 N -0.45 -7.62 10.57 -8.07 -0.09 -7.71 16 5 C 0.06 0.95 6.85 -84.61 -0.58 0.37 16 6 C 0.23 3.26 8.46 -155.64 -1.32 1.94 16 7 N -0.47 -6.12 10.35 -12.31 -0.13 -6.25 16 8 C 0.13 1.44 11.14 -17.57 -0.20 1.24 16 9 C -0.15 -1.90 9.60 -39.02 -0.37 -2.27 16 10 C -0.02 -0.41 5.93 -104.45 -0.62 -1.03 16 11 C 0.53 11.14 7.73 -12.39 -0.10 11.05 16 12 O -0.44 -10.96 14.48 5.31 0.08 -10.88 16 13 N -0.65 -13.24 5.34 -12.39 -0.07 -13.31 16 14 C 0.34 8.38 7.40 -154.77 -1.15 7.23 16 15 C -0.24 -6.07 8.60 -38.47 -0.33 -6.40 16 16 C 0.15 3.88 5.55 -106.55 -0.59 3.28 16 17 C -0.46 -11.79 9.09 -37.65 -0.34 -12.13 16 18 H 0.08 2.05 7.91 -52.48 -0.42 1.63 16 19 C 0.08 1.93 5.13 -17.34 -0.09 1.85 16 20 N -0.79 -19.36 11.27 55.55 0.63 -18.74 16 21 Si 0.91 17.77 29.60 -169.99 -5.03 12.74 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.28 -6.97 9.90 -38.71 -0.38 -7.35 16 26 C 0.12 2.95 11.15 -17.68 -0.20 2.75 16 27 N -0.55 -14.42 7.89 -12.54 -0.10 -14.52 16 28 N -0.59 -6.26 6.23 -9.43 -0.06 -6.32 16 29 H 0.43 2.86 8.96 -40.82 -0.37 2.50 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.41 6.54 -52.49 -0.34 1.07 16 37 H 0.41 6.57 6.85 -40.82 -0.28 6.29 16 38 H 0.12 2.98 6.53 -52.48 -0.34 2.64 16 39 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 40 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -35.97 357.35 -10.86 -46.84 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.26 Total: 11.19 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -7.22 Total: 1.56 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: 0.19 Total: -66.83 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.97 -10.86 -46.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629861338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.961 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds