Wall clock time and date at job start Tue Mar 31 2020 19:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47030 * 2 1 4 4 N 1.30289 * 124.97132 * 304.95537 * 3 2 1 5 5 C 1.34651 * 109.66437 * 179.77046 * 4 3 2 6 6 C 1.40821 * 107.26661 * 0.42177 * 5 4 3 7 7 N 1.32117 * 120.46450 * 179.79720 * 6 5 4 8 8 C 1.31722 * 121.95322 * 359.72726 * 7 6 5 9 9 C 1.38324 * 121.55429 * 359.97438 * 8 7 6 10 10 C 1.39669 * 119.37106 * 0.02562 * 9 8 7 11 11 C 1.47716 * 121.07759 * 180.02562 * 10 9 8 12 12 O 1.21563 * 119.99900 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99920 * 359.97438 * 11 10 9 14 14 C 1.39370 * 120.00023 * 185.03952 * 13 11 10 15 15 C 1.38622 * 119.58394 * 185.76472 * 14 13 11 16 16 C 1.40802 * 118.79259 * 179.97438 * 15 14 13 17 17 C 1.41546 * 120.99420 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00320 * 207.33316 * 17 16 15 19 19 C 1.40034 * 119.99929 * 27.33436 * 17 16 15 20 20 N 1.30739 * 120.00237 * 18.64583 * 19 17 16 21 21 Si 1.86804 * 119.99854 * 198.64783 * 19 17 16 22 22 H 1.48496 * 109.47297 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47167 * 119.99732 * 21 19 17 24 24 H 1.48496 * 109.46841 * 239.99766 * 21 19 17 25 25 C 1.41174 * 118.01151 * 0.02562 * 16 15 14 26 26 C 1.37587 * 119.01987 * 359.97438 * 25 16 15 27 27 N 1.32081 * 121.11483 * 0.02562 * 26 25 16 28 28 N 1.35996 * 124.97359 * 125.00253 * 3 2 1 29 29 H 0.96994 * 126.35151 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46857 * 300.00141 * 1 2 3 31 31 H 1.08996 * 109.47327 * 59.99889 * 1 2 3 32 32 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46761 * 239.99670 * 2 1 3 34 34 H 1.09001 * 109.46968 * 119.99814 * 2 1 3 35 35 H 1.08000 * 119.22780 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.32147 * 180.02562 * 9 8 7 37 37 H 0.97003 * 120.00060 * 5.03721 * 13 11 10 38 38 H 1.08004 * 120.60141 * 0.02562 * 15 14 13 39 39 H 0.96996 * 120.00493 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.49185 * 180.02562 * 25 16 15 41 41 H 1.08002 * 119.44409 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7045 2.3287 -0.8750 5 6 2.3255 3.4867 -0.5808 6 6 3.1068 3.2616 0.5690 7 7 3.8352 4.2355 1.0851 8 6 3.8665 5.4399 0.5526 9 6 3.1359 5.7497 -0.5803 10 6 2.3448 4.7647 -1.1758 11 6 1.5498 5.0541 -2.3867 12 8 0.8682 4.1818 -2.8892 13 7 1.5800 6.2852 -2.9344 14 6 0.7510 6.5887 -4.0129 15 6 0.8734 7.8158 -4.6461 16 6 0.0277 8.1047 -5.7341 17 6 0.1130 9.3428 -6.4148 18 1 -0.7558 9.7456 -6.9142 19 6 1.3240 10.0455 -6.4409 20 7 2.4444 9.4275 -6.1724 21 14 1.3387 11.8660 -6.8593 22 1 -0.0492 12.3251 -7.1205 23 1 1.9064 12.6312 -5.7202 24 1 2.1704 12.0892 -8.0690 25 6 -0.9078 7.1227 -6.1258 26 6 -0.9554 5.9333 -5.4359 27 7 -0.1441 5.7007 -4.4199 28 7 2.8948 1.9426 0.9128 29 1 3.2880 1.4742 1.6657 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.4778 6.2033 1.0108 36 1 3.1767 6.7437 -1.0005 37 1 2.1788 6.9601 -2.5780 38 1 1.6046 8.5367 -4.3114 39 1 3.2832 9.9142 -6.1901 40 1 -1.5757 7.3021 -6.9554 41 1 -1.6682 5.1771 -5.7300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629861338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:05 Heat of formation + Delta-G solvation = 66.334912 kcal Electronic energy + Delta-G solvation = -27462.514176 eV Core-core repulsion = 23535.394038 eV Total energy + Delta-G solvation = -3927.120139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.128 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.57341 -41.31773 -39.83456 -39.11731 -36.15244 -35.57906 -34.78840 -34.49776 -32.72996 -32.40729 -30.38231 -30.18854 -27.90605 -26.37860 -24.93219 -24.26716 -23.88631 -22.95578 -21.78143 -21.60448 -19.74311 -19.52817 -18.65264 -18.27637 -17.60634 -17.07297 -16.95079 -16.39632 -16.13316 -16.07284 -15.79559 -15.62953 -15.33856 -15.20344 -14.89327 -14.57397 -14.36393 -14.22411 -13.95647 -13.65117 -13.21641 -13.03274 -12.94879 -12.64309 -12.53820 -12.27404 -12.15034 -12.09764 -11.89959 -11.87199 -11.51627 -11.28399 -11.12492 -10.35131 -10.05867 -9.94323 -9.62158 -9.54666 -8.88237 -8.67438 -6.54995 -0.77684 0.02912 0.78214 0.99112 1.40941 1.43244 1.53854 1.58476 1.63930 1.93215 1.97723 2.22272 2.72506 2.84858 2.91569 3.24735 3.49540 3.56337 3.72786 3.75794 3.98974 4.08657 4.20753 4.29012 4.43026 4.57195 4.60449 4.72663 4.80866 4.82872 4.90252 4.96503 4.99496 5.04230 5.07813 5.21742 5.37303 5.45831 5.47567 5.59654 5.89501 6.10890 6.12572 6.43633 6.53867 6.68388 6.75174 6.78508 6.83373 7.21383 7.80847 8.28139 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002739 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.397689 B =10219.638588 C =11634.682201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C 0.306 3.694 4 N -0.514 5.514 5 C 0.024 3.976 6 C 0.223 3.777 7 N -0.469 5.469 8 C 0.140 3.860 9 C -0.132 4.132 10 C -0.063 4.063 11 C 0.534 3.466 12 O -0.492 6.492 13 N -0.643 5.643 14 C 0.336 3.664 15 C -0.253 4.253 16 C 0.119 3.881 17 C -0.488 4.488 18 H 0.084 0.916 19 C 0.043 3.957 20 N -0.811 5.811 21 Si 0.986 3.014 22 H -0.259 1.259 23 H -0.259 1.259 24 H -0.267 1.267 25 C -0.296 4.296 26 C 0.114 3.886 27 N -0.582 5.582 28 N -0.568 5.568 29 H 0.446 0.554 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.223 0.777 36 H 0.178 0.822 37 H 0.423 0.577 38 H 0.121 0.879 39 H 0.294 0.706 40 H 0.117 0.883 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 -9.378 17.032 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C 0.039 3.961 4 N -0.234 5.234 5 C -0.100 4.100 6 C -0.014 4.014 7 N -0.183 5.183 8 C -0.026 4.026 9 C -0.154 4.154 10 C -0.076 4.076 11 C 0.321 3.679 12 O -0.363 6.363 13 N -0.292 5.292 14 C 0.110 3.890 15 C -0.279 4.279 16 C 0.111 3.889 17 C -0.518 4.518 18 H 0.103 0.897 19 C -0.175 4.175 20 N -0.436 5.436 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.184 1.184 24 H -0.192 1.192 25 C -0.320 4.320 26 C -0.039 4.039 27 N -0.302 5.302 28 N -0.185 5.185 29 H 0.290 0.710 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.195 0.805 37 H 0.262 0.738 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.267 -11.186 17.224 21.473 hybrid contribution 0.456 1.927 -0.683 2.095 sum 6.724 -9.259 16.541 20.113 Atomic orbital electron populations 1.21685 0.93218 1.03599 1.01708 1.20467 0.97113 0.83478 1.06765 1.24774 0.88534 0.98397 0.84420 1.70278 1.26463 0.99585 1.27070 1.19565 0.99686 0.93971 0.96779 1.19037 0.99146 0.88268 0.94989 1.66362 1.19162 1.00317 1.32454 1.23307 0.95968 0.91712 0.91619 1.22629 0.95521 1.00035 0.97255 1.19746 0.99545 0.92872 0.95470 1.18645 0.82560 0.82384 0.84358 1.90877 1.39262 1.45083 1.61073 1.43235 1.40591 1.13990 1.31405 1.18338 0.90840 0.90957 0.88834 1.21371 1.08486 0.97074 1.00925 1.17976 0.89133 0.92547 0.89278 1.19838 0.97719 1.03441 1.30793 0.89748 1.26796 0.93881 1.04795 0.92001 1.69825 0.99741 1.39514 1.34565 0.85105 0.79673 0.75700 0.78917 1.18253 1.18358 1.19190 1.22109 1.07953 0.96228 1.05663 1.22192 0.95380 0.95567 0.90795 1.67318 1.09738 1.33899 1.19282 1.42710 1.40468 1.07262 1.28024 0.71040 0.92873 0.94349 0.88591 0.87327 0.85233 0.76050 0.80500 0.73826 0.86076 0.89558 0.86489 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.85 71.98 0.71 -1.60 16 2 C -0.04 -0.53 6.56 29.85 0.20 -0.33 16 3 C 0.31 7.20 7.37 137.88 1.02 8.22 16 4 N -0.51 -18.23 10.57 -179.44 -1.90 -20.13 16 5 C 0.02 0.82 6.85 40.02 0.27 1.10 16 6 C 0.22 6.03 8.46 133.92 1.13 7.16 16 7 N -0.47 -10.98 10.35 -192.85 -2.00 -12.97 16 8 C 0.14 2.59 11.14 84.73 0.94 3.53 16 9 C -0.13 -3.03 9.60 22.64 0.22 -2.81 16 10 C -0.06 -2.17 5.93 -19.75 -0.12 -2.29 16 11 C 0.53 23.34 7.73 86.75 0.67 24.01 16 12 O -0.49 -26.21 14.48 -3.91 -0.06 -26.26 16 13 N -0.64 -26.93 5.34 -311.38 -1.66 -28.59 16 14 C 0.34 17.14 7.40 132.79 0.98 18.12 16 15 C -0.25 -13.16 8.60 22.99 0.20 -12.97 16 16 C 0.12 6.42 5.55 -21.12 -0.12 6.31 16 17 C -0.49 -25.29 9.09 23.52 0.21 -25.07 16 18 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 19 C 0.04 2.04 5.13 85.29 0.44 2.48 16 20 N -0.81 -39.76 11.27 21.84 0.25 -39.51 16 21 Si 0.99 35.60 29.60 68.60 2.03 37.63 16 22 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 23 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 24 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 25 C -0.30 -15.07 9.90 22.84 0.23 -14.85 16 26 C 0.11 5.77 11.15 84.50 0.94 6.71 16 27 N -0.58 -31.67 7.89 -193.58 -1.53 -33.20 16 28 N -0.57 -11.25 6.23 -183.76 -1.14 -12.39 16 29 H 0.45 4.80 8.96 -92.71 -0.83 3.97 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.22 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.18 2.89 6.54 -2.91 -0.02 2.87 16 37 H 0.42 13.79 6.85 -92.71 -0.64 13.15 16 38 H 0.12 6.12 6.53 -2.91 -0.02 6.10 16 39 H 0.29 12.73 8.29 -92.71 -0.77 11.97 16 40 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 41 H 0.15 6.47 8.06 -2.91 -0.02 6.45 16 Total: -1.00 -84.12 357.35 1.58 -82.55 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.34 Total: 35.16 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 7.93 Total: 17.72 kcal Atomic # 7 Polarization: -138.81 SS G_CDS: -7.98 Total: -146.79 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -84.12 1.58 -82.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629861338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.881 kcal (2) G-P(sol) polarization free energy of solvation -84.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds