Wall clock time and date at job start Tue Mar 31 2020 20:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99804 * 2 1 4 4 C 1.38968 * 120.07868 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.91541 * 179.74367 * 4 3 2 6 6 C 1.38303 * 120.08204 * 0.23776 * 5 4 3 7 7 C 1.50695 * 119.91768 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47756 * 19.99399 * 7 6 5 9 9 C 1.53005 * 109.47159 * 259.99710 * 7 6 5 10 10 N 1.46504 * 109.47473 * 139.99817 * 7 6 5 11 11 C 1.34770 * 120.00282 * 204.99588 * 10 7 6 12 12 O 1.21586 * 120.00024 * 0.02562 * 11 10 7 13 13 N 1.34774 * 119.99755 * 179.97438 * 11 10 7 14 14 C 1.46501 * 119.99616 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47155 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99350 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00143 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99700 * 180.02562 * 17 15 14 19 19 H 1.07993 * 120.00157 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99636 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00138 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99704 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46721 * 90.00432 * 22 20 18 24 24 H 1.48502 * 109.47118 * 209.99865 * 22 20 18 25 25 H 1.48492 * 109.47547 * 330.00303 * 22 20 18 26 26 C 1.38301 * 120.15818 * 359.97438 * 6 5 4 27 27 C 1.38079 * 120.08174 * 0.04605 * 26 6 5 28 28 H 1.08998 * 109.47528 * 60.00130 * 1 2 3 29 29 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47304 * 300.00002 * 1 2 3 31 31 H 1.08002 * 120.04475 * 0.02806 * 4 3 2 32 32 H 1.07999 * 119.95830 * 180.25063 * 5 4 3 33 33 H 1.09006 * 109.47050 * 300.00201 * 9 7 6 34 34 H 1.09007 * 109.47114 * 59.99719 * 9 7 6 35 35 H 1.08998 * 109.47514 * 180.02562 * 9 7 6 36 36 H 0.97005 * 119.99131 * 24.99846 * 10 7 6 37 37 H 0.96998 * 120.00253 * 0.02562 * 13 11 10 38 38 H 1.08994 * 109.47619 * 300.00048 * 14 13 11 39 39 H 1.09002 * 109.47077 * 60.00361 * 14 13 11 40 40 H 0.96994 * 119.99807 * 359.97438 * 17 15 14 41 41 H 0.96993 * 119.99590 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.95635 * 180.02562 * 26 6 5 43 43 H 1.08003 * 120.03812 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8454 3.4714 -0.0059 6 6 2.8326 4.4132 -0.0057 7 6 3.1716 5.8815 -0.0122 8 1 4.1930 6.0172 -0.3676 9 6 3.0471 6.4399 1.4069 10 7 2.2474 6.5923 -0.8994 11 6 2.6182 7.7583 -1.4644 12 8 3.7199 8.2202 -1.2381 13 7 1.7682 8.4118 -2.2809 14 6 2.1715 9.6790 -2.8955 15 6 1.0490 10.1999 -3.7557 16 8 0.0138 9.5742 -3.8460 17 7 1.1954 11.3608 -4.4245 18 6 0.1740 11.8348 -5.2066 19 1 -0.7477 11.2778 -5.2871 20 6 0.3248 13.0319 -5.8958 21 7 1.4462 13.7099 -5.7975 22 14 -1.0666 13.6774 -6.9619 23 1 -1.9531 14.5459 -6.1463 24 1 -0.5031 14.4641 -8.0883 25 1 -1.8498 12.5356 -7.4986 26 6 1.5095 4.0106 -0.0008 27 6 1.1952 2.6661 0.0050 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.3302 1.3903 -0.0014 32 1 4.8776 3.7894 -0.0104 33 1 2.0256 6.3044 1.7624 34 1 3.7347 5.9111 2.0671 35 1 3.2918 7.5021 1.4022 36 1 1.3686 6.2235 -1.0801 37 1 0.8894 8.0431 -2.4617 38 1 2.3979 10.4055 -2.1152 39 1 3.0569 9.5189 -3.5108 40 1 2.0231 11.8612 -4.3520 41 1 1.5512 14.5458 -6.2783 42 1 0.7211 4.7488 -0.0011 43 1 0.1617 2.3525 0.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346282300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:30 Heat of formation + Delta-G solvation = -45.540615 kcal Electronic energy + Delta-G solvation = -25269.108179 eV Core-core repulsion = 21440.287954 eV Total energy + Delta-G solvation = -3828.820225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34947 -39.34231 -38.19171 -35.74995 -34.38618 -33.65334 -32.02540 -31.45277 -31.28679 -29.77491 -29.08983 -27.35952 -24.68090 -24.05848 -23.13772 -21.42393 -20.40010 -19.57183 -18.66995 -18.15486 -17.89468 -16.77099 -15.94913 -15.51188 -15.46728 -15.42135 -14.99812 -14.61640 -14.54337 -14.36710 -14.19694 -14.15972 -14.00035 -13.71572 -13.54436 -13.39271 -13.02234 -12.76863 -12.50526 -12.17927 -12.01177 -11.82464 -11.68445 -11.62956 -11.13955 -11.11797 -10.66407 -10.46289 -10.32285 -10.08971 -9.94860 -9.63600 -9.36904 -9.19679 -8.63171 -8.62481 -8.09909 -7.78588 -6.51355 -3.93373 0.76413 0.99020 1.09660 1.96424 2.78115 3.11485 3.21907 3.27105 3.29679 3.40883 3.75354 4.08791 4.32307 4.40144 4.43652 4.53069 4.58044 4.58855 4.90265 4.95356 5.01888 5.13953 5.14488 5.17448 5.22479 5.35745 5.52024 5.57985 5.73836 5.85514 5.88391 5.93155 6.01006 6.06052 6.08566 6.17517 6.48637 6.53850 6.75200 7.07740 7.46019 7.92519 8.22130 8.45336 8.78595 9.04724 9.39701 9.87592 10.65520 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.001819 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.931149 B =15387.226674 C =16433.607712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.122 6.122 3 C -0.085 4.085 4 C -0.096 4.096 5 C -0.087 4.087 6 C -0.091 4.091 7 C 0.203 3.797 8 H 0.098 0.902 9 C -0.159 4.159 10 N -0.744 5.744 11 C 0.706 3.294 12 O -0.596 6.596 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.429 3.571 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.092 4.092 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.406 0.594 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.126 0.874 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -23.700 14.154 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.120 5.880 3 C -0.198 4.198 4 C -0.120 4.120 5 C -0.108 4.108 6 C -0.094 4.094 7 C 0.098 3.902 8 H 0.116 0.884 9 C -0.217 4.217 10 N -0.401 5.401 11 C 0.406 3.594 12 O -0.475 6.475 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.112 4.112 27 C -0.153 4.153 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.230 0.770 37 H 0.243 0.757 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.086 -24.529 14.170 28.496 hybrid contribution -1.865 1.483 -0.701 2.484 sum 1.221 -23.046 13.468 26.721 Atomic orbital electron populations 1.23685 0.94557 1.07201 1.05848 1.85510 1.06678 1.03246 1.92586 1.21740 0.96768 0.96394 1.04878 1.20734 0.94250 0.96024 1.00955 1.20959 0.99327 0.91885 0.98590 1.20028 0.93611 0.95030 1.00711 1.19574 0.94675 0.85733 0.90213 0.88368 1.22201 1.02147 1.02273 0.95102 1.45215 1.19433 1.23570 1.51899 1.15824 0.84243 0.80417 0.78901 1.90901 1.21152 1.68575 1.66895 1.44773 1.19273 1.24348 1.49746 1.20784 0.97158 0.85131 0.96897 1.19773 0.89147 0.84092 0.85570 1.90489 1.30163 1.59462 1.68414 1.41786 1.17264 1.18887 1.40452 1.19722 0.96496 1.04800 1.22415 0.87706 1.25329 0.97929 0.96280 0.98222 1.69616 1.25022 1.16057 1.42739 0.85810 0.80224 0.78893 0.79077 1.20285 1.20800 1.19347 1.20843 0.96035 0.95325 0.99009 1.21127 0.98265 0.92980 1.02884 0.89563 0.87351 0.89648 0.85277 0.84985 0.92429 0.91591 0.91228 0.77042 0.75653 0.89998 0.90001 0.77004 0.91594 0.85578 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.15 101.05 0.92 0.24 16 2 S -0.12 -0.93 22.57 -107.50 -2.43 -3.36 16 3 C -0.09 -0.74 6.11 -39.04 -0.24 -0.98 16 4 C -0.10 -0.82 9.79 -39.37 -0.39 -1.20 16 5 C -0.09 -0.74 9.66 -39.61 -0.38 -1.12 16 6 C -0.09 -0.83 4.96 -104.58 -0.52 -1.34 16 7 C 0.20 2.13 2.77 -69.08 -0.19 1.94 16 8 H 0.10 1.16 7.43 -51.93 -0.39 0.77 16 9 C -0.16 -1.53 9.46 37.16 0.35 -1.18 16 10 N -0.74 -8.85 5.03 -59.81 -0.30 -9.15 16 11 C 0.71 11.29 8.53 -86.93 -0.74 10.55 16 12 O -0.60 -11.36 16.01 5.29 0.08 -11.28 16 13 N -0.72 -12.10 5.53 -66.41 -0.37 -12.47 16 14 C 0.13 2.39 6.15 -5.19 -0.03 2.36 16 15 C 0.43 9.81 7.85 -10.98 -0.09 9.73 16 16 O -0.60 -15.25 15.24 5.54 0.08 -15.16 16 17 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 22 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.09 -0.77 9.04 -39.62 -0.36 -1.13 16 27 C -0.13 -1.05 9.36 -39.37 -0.37 -1.42 16 28 H 0.09 0.39 7.76 -51.93 -0.40 -0.01 16 29 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.35 7.74 -51.92 -0.40 -0.05 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.91 8.03 -52.49 -0.42 0.48 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.39 3.90 6.87 -40.82 -0.28 3.62 16 37 H 0.41 6.60 7.45 -40.82 -0.30 6.29 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.40 9.45 7.90 -40.82 -0.32 9.12 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.13 0.89 6.91 -52.48 -0.36 0.53 16 43 H 0.13 0.79 5.88 -52.48 -0.31 0.49 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -32.24 379.97 -9.48 -41.72 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -5.66 Total: 16.72 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.27 Total: 8.56 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.00 Total: -58.41 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: 0.17 Total: -26.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.43 Total: -3.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.24 -9.48 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346282300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.819 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds