Wall clock time and date at job start Tue Mar 31 2020 20:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99756 * 2 1 4 4 C 1.39000 * 120.08236 * 0.30037 * 3 2 1 5 5 C 1.38054 * 119.91758 * 180.25167 * 4 3 2 6 6 C 1.38330 * 120.08378 * 359.74614 * 5 4 3 7 7 C 1.38282 * 120.15792 * 359.97317 * 6 5 4 8 8 C 1.38105 * 120.08138 * 0.02562 * 7 6 5 9 9 C 1.50691 * 120.03818 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47186 * 145.00153 * 9 8 7 11 11 C 1.53008 * 109.47321 * 265.00061 * 9 8 7 12 12 N 1.46500 * 109.47568 * 25.00107 * 9 8 7 13 13 C 1.34773 * 120.00431 * 155.00128 * 12 9 8 14 14 O 1.21593 * 119.99894 * 359.97438 * 13 12 9 15 15 N 1.34777 * 120.00097 * 179.72742 * 13 12 9 16 16 C 1.46504 * 119.99854 * 180.27545 * 15 13 12 17 17 C 1.50701 * 109.46923 * 179.97438 * 16 15 13 18 18 O 1.21297 * 119.99993 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99977 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00191 * 359.97438 * 20 19 17 22 22 C 1.38947 * 119.99788 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00457 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47233 * 59.99986 * 24 22 20 26 26 H 1.48504 * 109.47293 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47194 * 299.99814 * 24 22 20 28 28 H 1.09001 * 109.47148 * 299.99762 * 1 2 3 29 29 H 1.09001 * 109.46977 * 59.99961 * 1 2 3 30 30 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.03837 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.95653 * 179.76137 * 5 4 3 33 33 H 1.07994 * 119.91935 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.95489 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.46414 * 300.00066 * 11 9 8 36 36 H 1.08994 * 109.47203 * 59.99943 * 11 9 8 37 37 H 1.08991 * 109.47246 * 180.02562 * 11 9 8 38 38 H 0.97000 * 119.99456 * 334.99690 * 12 9 8 39 39 H 0.97000 * 119.99736 * 0.26819 * 15 13 12 40 40 H 1.08998 * 109.46968 * 299.99782 * 16 15 13 41 41 H 1.08997 * 109.47198 * 59.99605 * 16 15 13 42 42 H 0.97003 * 119.99587 * 0.02562 * 19 17 16 43 43 H 0.96990 * 120.00229 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6663 0.0063 5 6 1.5094 4.0105 0.0010 6 6 2.8328 4.4132 -0.0052 7 6 3.8454 3.4715 -0.0056 8 6 3.5386 2.1250 -0.0004 9 6 4.6429 1.0997 -0.0002 10 1 4.3381 0.2375 0.5929 11 6 4.9269 0.6558 -1.4367 12 7 5.8542 1.6865 0.5781 13 6 6.7839 0.8920 1.1444 14 8 6.6170 -0.3120 1.1759 15 7 7.9008 1.4315 1.6715 16 6 8.9142 0.5671 2.2818 17 6 10.0542 1.4114 2.7904 18 8 10.0230 2.6166 2.6567 19 7 11.1078 0.8274 3.3947 20 6 12.1447 1.5955 3.8579 21 1 12.1174 2.6685 3.7381 22 6 13.2312 0.9934 4.4804 23 7 13.2648 -0.3123 4.6258 24 14 14.6443 2.0399 5.1109 25 1 14.1363 2.9990 6.1245 26 1 15.6712 1.1639 5.7301 27 1 15.2487 2.7888 3.9799 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.1616 2.3526 0.0108 32 1 0.7210 4.7487 0.0020 33 1 3.0756 5.4655 -0.0089 34 1 4.8775 3.7895 -0.0101 35 1 4.0256 0.2191 -1.8669 36 1 5.2317 1.5179 -2.0298 37 1 5.7253 -0.0861 -1.4366 38 1 5.9872 2.6471 0.5532 39 1 8.0338 2.3920 1.6467 40 1 8.4705 0.0171 3.1117 41 1 9.2873 -0.1366 1.5378 42 1 11.1325 -0.1364 3.5019 43 1 14.0230 -0.7325 5.0607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346527088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:37 Heat of formation + Delta-G solvation = -40.064159 kcal Electronic energy + Delta-G solvation = -25638.644404 eV Core-core repulsion = 21810.061656 eV Total energy + Delta-G solvation = -3828.582748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.33973 -39.30258 -38.16292 -35.75687 -34.35520 -33.61959 -31.91186 -31.57951 -31.30708 -29.47346 -29.15724 -27.32787 -24.63393 -23.92262 -23.30055 -21.39577 -20.33911 -19.54187 -18.78200 -18.08765 -17.60192 -16.82882 -15.96167 -15.52349 -15.47398 -15.40834 -14.84412 -14.64062 -14.43211 -14.38901 -14.34672 -14.07884 -14.03551 -13.66937 -13.46323 -13.20601 -12.92000 -12.68869 -12.38405 -12.14770 -12.02081 -11.82729 -11.61068 -11.46150 -11.35694 -11.08735 -10.49246 -10.38156 -10.29637 -10.08172 -9.97892 -9.60460 -9.30198 -9.07730 -8.59957 -8.59056 -8.07625 -7.72379 -6.48993 -3.91098 0.84368 0.95584 1.17179 2.05805 2.80709 3.15319 3.22912 3.26846 3.31238 3.44614 3.77966 4.10606 4.27964 4.42707 4.44774 4.63767 4.64162 4.67357 4.93190 4.98062 5.00175 5.18013 5.19427 5.21744 5.24773 5.35398 5.53933 5.65550 5.76188 5.87487 5.93995 6.04516 6.06850 6.11320 6.12473 6.15573 6.50693 6.57883 6.79078 7.11182 7.47933 7.94598 8.25970 8.47809 8.83093 9.06851 9.42074 9.90095 10.67837 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.001981 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.128227 B =14129.834477 C =14843.661139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.098 6.098 3 C -0.079 4.079 4 C -0.130 4.130 5 C -0.104 4.104 6 C -0.118 4.118 7 C -0.098 4.098 8 C -0.068 4.068 9 C 0.202 3.798 10 H 0.104 0.896 11 C -0.158 4.158 12 N -0.745 5.745 13 C 0.706 3.294 14 O -0.594 6.594 15 N -0.724 5.724 16 C 0.129 3.871 17 C 0.429 3.571 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.934 3.066 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.394 0.606 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.868 4.028 -11.218 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.145 5.855 3 C -0.193 4.193 4 C -0.154 4.154 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.118 4.118 8 C -0.075 4.075 9 C 0.096 3.904 10 H 0.122 0.878 11 C -0.217 4.217 12 N -0.403 5.403 13 C 0.406 3.594 14 O -0.472 6.472 15 N -0.381 5.381 16 C 0.000 4.000 17 C 0.215 3.785 18 O -0.485 6.485 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.122 0.878 22 C -0.178 4.178 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.230 0.770 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.212 2.475 -11.155 27.680 hybrid contribution 0.008 1.956 0.441 2.005 sum -25.204 4.431 -10.713 27.742 Atomic orbital electron populations 1.23748 0.95713 1.07190 1.05517 1.85860 1.05450 1.02251 1.91911 1.21547 0.95584 0.97084 1.05044 1.21125 0.98013 0.93189 1.03078 1.21053 0.96713 0.95236 0.99332 1.21178 0.92639 0.99728 1.00287 1.20886 0.99661 0.91809 0.99414 1.19607 0.92238 0.94659 1.00961 1.19551 0.81274 0.94116 0.95471 0.87831 1.22175 1.02842 1.01939 0.94722 1.45231 1.21065 1.09845 1.64120 1.15815 0.79984 0.85312 0.78288 1.90910 1.79081 1.12679 1.64577 1.44761 1.19199 1.11621 1.62556 1.20782 0.88285 0.92461 0.98429 1.19775 0.84994 0.88644 0.85125 1.90487 1.80581 1.14616 1.62839 1.41782 1.16644 1.10145 1.49841 1.19671 0.96202 0.93096 1.34471 0.87761 1.25325 0.99148 0.96060 0.97222 1.69607 1.32221 1.08774 1.42883 0.85873 0.79865 0.79103 0.79110 1.19808 1.20872 1.19803 0.89790 0.89793 0.87312 0.85744 0.85676 0.85478 0.85464 0.91109 0.92418 0.91083 0.76958 0.75675 0.89992 0.89985 0.76995 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.15 101.05 0.92 0.10 16 2 S -0.10 -0.91 20.44 -107.50 -2.20 -3.10 16 3 C -0.08 -0.78 6.11 -39.03 -0.24 -1.02 16 4 C -0.13 -1.05 9.36 -39.37 -0.37 -1.42 16 5 C -0.10 -0.77 10.04 -39.62 -0.40 -1.16 16 6 C -0.12 -0.92 10.04 -39.53 -0.40 -1.31 16 7 C -0.10 -0.88 9.23 -39.61 -0.37 -1.25 16 8 C -0.07 -0.72 5.08 -104.41 -0.53 -1.25 16 9 C 0.20 2.45 2.24 -69.08 -0.16 2.29 16 10 H 0.10 1.49 6.46 -51.93 -0.34 1.15 16 11 C -0.16 -1.78 9.46 37.16 0.35 -1.42 16 12 N -0.74 -9.60 5.00 -59.81 -0.30 -9.90 16 13 C 0.71 11.83 8.53 -86.92 -0.74 11.09 16 14 O -0.59 -11.83 16.01 5.28 0.08 -11.75 16 15 N -0.72 -12.44 5.53 -66.41 -0.37 -12.80 16 16 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 17 C 0.43 9.94 7.85 -10.99 -0.09 9.85 16 18 O -0.60 -15.37 15.24 5.54 0.08 -15.29 16 19 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -24.03 13.05 55.50 0.72 -23.31 16 24 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.08 0.40 7.74 -51.92 -0.40 0.00 16 29 H 0.08 0.37 7.76 -51.92 -0.40 -0.04 16 30 H 0.11 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.12 0.75 5.88 -52.48 -0.31 0.44 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.97 6.07 -52.49 -0.32 0.65 16 35 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.39 4.15 6.22 -40.82 -0.25 3.89 16 39 H 0.41 6.73 7.45 -40.82 -0.30 6.43 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.55 7.90 -40.82 -0.32 9.22 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -32.72 375.34 -9.19 -41.91 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -5.52 Total: 17.77 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.28 Total: 9.00 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.00 Total: -59.81 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.17 Total: -27.03 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.20 Total: -3.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.72 -9.19 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346527088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.846 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds