Wall clock time and date at job start Tue Mar 31 2020 20:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47259 * 2 1 4 4 N 1.46498 * 109.47034 * 120.00613 * 2 1 3 5 5 S 1.65602 * 119.99612 * 264.71801 * 4 2 1 6 6 O 1.42109 * 104.27511 * 181.34803 * 5 4 2 7 7 O 1.42098 * 104.28120 * 309.20801 * 5 4 2 8 8 C 1.81394 * 104.44973 * 65.28269 * 5 4 2 9 9 C 1.53003 * 109.47387 * 179.97438 * 8 5 4 10 10 C 1.53002 * 109.47130 * 179.97438 * 9 8 5 11 11 C 1.50692 * 109.47012 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00112 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00231 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99857 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00269 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47241 * 60.00170 * 15 13 11 17 17 H 1.48497 * 109.47563 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47390 * 300.00100 * 15 13 11 19 19 C 1.50702 * 109.46649 * 240.00369 * 2 1 3 20 20 C 1.39681 * 119.13767 * 279.99910 * 19 2 1 21 21 C 1.35634 * 121.81602 * 180.02562 * 20 19 2 22 22 C 1.41149 * 119.59899 * 359.97353 * 21 20 19 23 23 N 1.32060 * 134.68593 * 180.02562 * 22 21 20 24 24 N 1.39953 * 108.96252 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.02191 * 180.02562 * 24 23 22 26 26 C 1.33981 * 109.95767 * 359.97438 * 24 23 22 27 27 C 1.38244 * 107.90624 * 0.02562 * 26 24 23 28 28 C 1.35658 * 119.13375 * 99.73341 * 19 2 1 29 29 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46713 * 299.99498 * 1 2 3 31 31 H 1.08999 * 109.47174 * 59.98917 * 1 2 3 32 32 H 0.97001 * 120.00384 * 85.00279 * 4 2 1 33 33 H 1.09009 * 109.47044 * 299.99503 * 8 5 4 34 34 H 1.09001 * 109.47747 * 59.99183 * 8 5 4 35 35 H 1.09000 * 109.46375 * 299.99213 * 9 8 5 36 36 H 1.08993 * 109.47045 * 59.99537 * 9 8 5 37 37 H 1.09003 * 109.47270 * 300.00013 * 10 9 8 38 38 H 1.09000 * 109.46896 * 60.00012 * 10 9 8 39 39 H 0.96993 * 120.00008 * 179.97438 * 14 13 11 40 40 H 1.07995 * 119.09181 * 359.97438 * 20 19 2 41 41 H 1.08002 * 120.20126 * 179.97438 * 21 20 19 42 42 H 1.07996 * 126.05163 * 179.97438 * 26 24 23 43 43 H 1.07990 * 120.23176 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4187 0.1776 2.5481 6 8 2.8716 -0.8022 3.4725 7 8 3.2917 1.1909 2.0681 8 6 0.8500 0.8995 3.1035 9 6 1.0905 1.7352 4.3624 10 6 -0.2326 2.3446 4.8304 11 6 0.0041 3.1671 6.0707 12 1 0.9988 3.2476 6.4836 13 6 -1.0490 3.8179 6.6778 14 7 -2.2602 3.7203 6.1747 15 14 -0.7555 4.8380 8.2148 16 1 0.2103 5.9244 7.9109 17 1 -2.0393 5.4305 8.6685 18 1 -0.2038 3.9709 9.2867 19 6 2.0322 -0.7104 -1.2306 20 6 2.0591 -2.1068 -1.2464 21 6 2.5007 -2.8013 -2.3245 22 6 2.9473 -2.1043 -3.4677 23 7 3.4236 -2.4620 -4.6463 24 7 3.7039 -1.3112 -5.3919 25 1 4.0633 -1.3054 -6.2928 26 6 3.4013 -0.2187 -4.6777 27 6 2.9178 -0.6333 -3.4508 28 6 2.4412 0.0232 -2.2959 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 2.1110 -1.6563 1.1947 33 1 0.4441 1.5356 2.3168 34 1 0.1418 0.1017 3.3272 35 1 1.4960 1.0987 5.1488 36 1 1.7987 2.5330 4.1391 37 1 -0.6379 2.9810 4.0438 38 1 -0.9412 1.5469 5.0536 39 1 -3.0011 4.1778 6.6020 40 1 1.7197 -2.6484 -0.3759 41 1 2.5106 -3.8812 -2.3083 42 1 3.5158 0.8049 -5.0027 43 1 2.4063 1.1019 -2.2589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352501992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:12 Heat of formation + Delta-G solvation = 5.202287 kcal Electronic energy + Delta-G solvation = -26004.709280 eV Core-core repulsion = 22178.089432 eV Total energy + Delta-G solvation = -3826.619848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60119 -38.70297 -36.85089 -35.73183 -35.46531 -34.66317 -32.47999 -32.18964 -30.89580 -30.22799 -28.50311 -27.73685 -24.74527 -23.71998 -23.36132 -21.11226 -21.00861 -20.60739 -19.28590 -18.43367 -17.67947 -17.09215 -16.74967 -16.40388 -15.75018 -15.38498 -15.23972 -15.02350 -14.49982 -14.47722 -14.25604 -14.02472 -13.72800 -13.45587 -13.17607 -12.67306 -12.47226 -12.25214 -11.97405 -11.91125 -11.84814 -11.79186 -11.71520 -11.56879 -11.30253 -11.16221 -10.88913 -10.82890 -10.63151 -10.60330 -10.41267 -9.93213 -9.76488 -9.32715 -9.09083 -9.06921 -8.39656 -7.90560 -6.04950 -4.07867 0.26526 0.51106 1.47672 2.10038 2.31871 2.88248 3.32759 3.36632 3.39878 3.52851 3.87228 3.99342 4.26342 4.40828 4.43258 4.49042 4.72120 4.83474 4.90456 5.05141 5.06092 5.16242 5.17823 5.27230 5.30970 5.31402 5.39433 5.59511 5.76708 5.88694 5.92579 6.05258 6.13955 6.14923 6.28705 6.42608 6.47067 6.54689 6.66967 6.88202 6.94123 7.21742 7.57697 7.68059 7.93115 8.33836 8.98175 9.56692 11.06179 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.002129 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.816115 B =13149.532822 C =13451.032837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.101 0.899 4 N -1.118 6.118 5 S 2.599 3.401 6 O -0.963 6.963 7 O -0.962 6.962 8 C -0.610 4.610 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.116 4.116 20 C -0.061 4.061 21 C -0.105 4.105 22 C 0.105 3.895 23 N -0.310 5.310 24 N -0.428 5.428 25 H 0.443 0.557 26 C 0.085 3.915 27 C -0.204 4.204 28 C -0.031 4.031 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.190 0.810 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.847 -10.065 -24.360 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 H 0.119 0.881 4 N -0.876 5.876 5 S 2.695 3.305 6 O -0.954 6.954 7 O -0.952 6.952 8 C -0.742 4.742 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.120 4.120 20 C -0.084 4.084 21 C -0.126 4.126 22 C -0.049 4.049 23 N -0.138 5.138 24 N -0.128 5.128 25 H 0.287 0.713 26 C -0.072 4.072 27 C -0.214 4.214 28 C -0.052 4.052 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.206 0.794 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.868 -10.782 -24.754 28.419 hybrid contribution -0.668 0.933 0.640 1.313 sum 8.200 -9.849 -24.114 27.308 Atomic orbital electron populations 1.22483 0.94223 1.03472 1.03368 1.19682 0.93964 0.96004 0.82171 0.88125 1.55868 1.84284 1.19760 1.27701 1.05341 0.77605 0.74502 0.73066 1.93580 1.80009 1.59136 1.62649 1.93567 1.61910 1.60438 1.79242 1.30666 1.21039 1.12265 1.10249 1.21502 1.03560 0.97699 0.91775 1.19052 0.89866 0.95633 0.96151 1.21222 0.94537 1.30013 1.10711 0.92435 1.25018 0.95142 0.96626 0.97597 1.69943 0.99501 1.43545 1.40441 0.86617 0.77383 0.80516 0.83276 1.20136 1.21277 1.20131 1.19210 1.03576 0.93655 0.95511 1.20449 0.96950 0.93486 0.97526 1.19839 1.02725 0.99420 0.90595 1.20989 0.97684 0.93003 0.93209 1.77680 1.26648 1.04074 1.05396 1.46321 1.46563 1.04005 1.15876 0.71256 1.22737 0.98889 0.93530 0.92086 1.19583 1.12153 0.93520 0.96168 1.20100 0.95338 0.99325 0.90486 0.91467 0.91102 0.90976 0.75166 0.85327 0.85144 0.91599 0.91588 0.96118 0.96118 0.92860 0.85443 0.85250 0.79358 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.46 37.16 0.35 -1.09 16 2 C 0.19 1.78 2.98 -69.08 -0.21 1.57 16 3 H 0.10 0.95 7.26 -51.93 -0.38 0.57 16 4 N -1.12 -11.72 5.31 -5.88 -0.03 -11.76 16 5 S 2.60 37.29 5.44 -107.50 -0.58 36.71 16 6 O -0.96 -16.78 18.08 -57.54 -1.04 -17.82 16 7 O -0.96 -16.57 17.38 -57.54 -1.00 -17.57 16 8 C -0.61 -8.99 5.26 37.16 0.20 -8.79 16 9 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 10 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 11 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.12 -1.09 4.92 -105.01 -0.52 -1.60 16 20 C -0.06 -0.54 8.99 -39.97 -0.36 -0.90 16 21 C -0.10 -1.00 10.08 -39.41 -0.40 -1.40 16 22 C 0.11 1.13 7.49 -83.06 -0.62 0.51 16 23 N -0.31 -3.25 12.70 33.25 0.42 -2.83 16 24 N -0.43 -2.73 7.18 30.84 0.22 -2.51 16 25 H 0.44 1.10 8.96 -182.71 -1.64 -0.53 16 26 C 0.08 0.50 12.07 -16.61 -0.20 0.30 16 27 C -0.20 -1.87 6.33 -105.19 -0.67 -2.54 16 28 C -0.03 -0.28 9.65 -39.41 -0.38 -0.66 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.61 5.82 -51.93 -0.30 0.30 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.41 3.60 6.95 -34.47 -0.24 3.37 16 33 H 0.13 1.64 6.79 -51.92 -0.35 1.29 16 34 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 0.87 6.71 -52.49 -0.35 0.52 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.19 0.31 8.06 -52.49 -0.42 -0.12 16 43 H 0.13 0.87 7.98 -52.49 -0.42 0.45 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -38.48 371.80 -11.21 -49.69 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.03 Total: -0.68 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -3.49 Total: -29.69 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 1.35 Total: -42.71 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -2.04 Total: -35.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 37.29 SS G_CDS: -0.58 Total: 36.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.48 -11.21 -49.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352501992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.893 kcal (2) G-P(sol) polarization free energy of solvation -38.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds