Wall clock time and date at job start Tue Mar 31 2020 20:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47259 * 2 1 4 4 N 1.46498 * 109.47034 * 120.00613 * 2 1 3 5 5 S 1.65602 * 119.99612 * 264.71801 * 4 2 1 6 6 O 1.42109 * 104.27511 * 181.34803 * 5 4 2 7 7 O 1.42098 * 104.28120 * 309.20801 * 5 4 2 8 8 C 1.81394 * 104.44973 * 65.28269 * 5 4 2 9 9 C 1.53003 * 109.47387 * 179.97438 * 8 5 4 10 10 C 1.53002 * 109.47130 * 179.97438 * 9 8 5 11 11 C 1.50692 * 109.47012 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00112 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00231 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99857 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00269 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47241 * 60.00170 * 15 13 11 17 17 H 1.48497 * 109.47563 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47390 * 300.00100 * 15 13 11 19 19 C 1.50702 * 109.46649 * 240.00369 * 2 1 3 20 20 C 1.39681 * 119.13767 * 279.99910 * 19 2 1 21 21 C 1.35634 * 121.81602 * 180.02562 * 20 19 2 22 22 C 1.41149 * 119.59899 * 359.97353 * 21 20 19 23 23 N 1.32060 * 134.68593 * 180.02562 * 22 21 20 24 24 N 1.39953 * 108.96252 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.02191 * 180.02562 * 24 23 22 26 26 C 1.33981 * 109.95767 * 359.97438 * 24 23 22 27 27 C 1.38244 * 107.90624 * 0.02562 * 26 24 23 28 28 C 1.35658 * 119.13375 * 99.73341 * 19 2 1 29 29 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46713 * 299.99498 * 1 2 3 31 31 H 1.08999 * 109.47174 * 59.98917 * 1 2 3 32 32 H 0.97001 * 120.00384 * 85.00279 * 4 2 1 33 33 H 1.09009 * 109.47044 * 299.99503 * 8 5 4 34 34 H 1.09001 * 109.47747 * 59.99183 * 8 5 4 35 35 H 1.09000 * 109.46375 * 299.99213 * 9 8 5 36 36 H 1.08993 * 109.47045 * 59.99537 * 9 8 5 37 37 H 1.09003 * 109.47270 * 300.00013 * 10 9 8 38 38 H 1.09000 * 109.46896 * 60.00012 * 10 9 8 39 39 H 0.96993 * 120.00008 * 179.97438 * 14 13 11 40 40 H 1.07995 * 119.09181 * 359.97438 * 20 19 2 41 41 H 1.08002 * 120.20126 * 179.97438 * 21 20 19 42 42 H 1.07996 * 126.05163 * 179.97438 * 26 24 23 43 43 H 1.07990 * 120.23176 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4187 0.1776 2.5481 6 8 2.8716 -0.8022 3.4725 7 8 3.2917 1.1909 2.0681 8 6 0.8500 0.8995 3.1035 9 6 1.0905 1.7352 4.3624 10 6 -0.2326 2.3446 4.8304 11 6 0.0041 3.1671 6.0707 12 1 0.9988 3.2476 6.4836 13 6 -1.0490 3.8179 6.6778 14 7 -2.2602 3.7203 6.1747 15 14 -0.7555 4.8380 8.2148 16 1 0.2103 5.9244 7.9109 17 1 -2.0393 5.4305 8.6685 18 1 -0.2038 3.9709 9.2867 19 6 2.0322 -0.7104 -1.2306 20 6 2.0591 -2.1068 -1.2464 21 6 2.5007 -2.8013 -2.3245 22 6 2.9473 -2.1043 -3.4677 23 7 3.4236 -2.4620 -4.6463 24 7 3.7039 -1.3112 -5.3919 25 1 4.0633 -1.3054 -6.2928 26 6 3.4013 -0.2187 -4.6777 27 6 2.9178 -0.6333 -3.4508 28 6 2.4412 0.0232 -2.2959 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 2.1110 -1.6563 1.1947 33 1 0.4441 1.5356 2.3168 34 1 0.1418 0.1017 3.3272 35 1 1.4960 1.0987 5.1488 36 1 1.7987 2.5330 4.1391 37 1 -0.6379 2.9810 4.0438 38 1 -0.9412 1.5469 5.0536 39 1 -3.0011 4.1778 6.6020 40 1 1.7197 -2.6484 -0.3759 41 1 2.5106 -3.8812 -2.3083 42 1 3.5158 0.8049 -5.0027 43 1 2.4063 1.1019 -2.2589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352501992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:11 Heat of formation + Delta-G solvation = -23.182405 kcal Electronic energy + Delta-G solvation = -26005.940133 eV Core-core repulsion = 22178.089432 eV Total energy + Delta-G solvation = -3827.850701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18251 -39.37982 -38.11741 -37.00312 -36.44143 -36.19928 -34.13443 -33.12006 -31.52077 -30.96601 -29.68160 -28.98828 -25.69059 -25.22091 -24.08112 -22.36327 -21.77067 -21.57501 -20.34974 -19.09993 -18.67781 -18.55594 -17.77272 -17.41868 -17.09706 -16.57426 -16.41298 -15.85214 -15.83283 -15.57432 -15.10872 -14.72756 -14.51227 -14.39953 -14.15946 -14.03247 -13.70679 -13.49166 -13.37409 -13.15568 -13.09675 -12.92981 -12.70814 -12.64149 -12.59097 -12.51623 -12.30919 -12.09971 -11.92799 -11.68287 -11.35138 -11.26823 -11.23280 -11.06763 -10.53841 -10.41074 -9.69381 -8.53475 -8.19733 -6.30156 -0.69803 -0.27667 0.81853 1.42153 1.44372 1.49824 1.52236 1.84575 1.90338 2.42114 2.81336 2.86617 3.13730 3.24432 3.34457 3.75208 3.79135 3.83124 3.97943 4.12596 4.25612 4.33582 4.40537 4.43894 4.49746 4.60066 4.67989 4.70445 4.72373 4.92567 5.06306 5.10554 5.14883 5.28293 5.42252 5.49004 5.50510 5.52075 5.68332 5.76452 5.83345 5.93888 6.15619 6.23584 6.29773 6.61780 6.85433 7.38730 8.91317 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.002129 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.816115 B =13149.532822 C =13451.032837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.187 3.813 3 H 0.102 0.898 4 N -1.104 6.104 5 S 2.627 3.373 6 O -0.994 6.994 7 O -0.989 6.989 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.032 3.968 11 C -0.552 4.552 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.928 5.928 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.136 4.136 20 C -0.060 4.060 21 C -0.128 4.128 22 C 0.082 3.918 23 N -0.355 5.355 24 N -0.417 5.417 25 H 0.459 0.541 26 C 0.116 3.884 27 C -0.238 4.238 28 C -0.026 4.026 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.423 0.577 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.006 0.994 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.238 0.762 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -9.161 -25.447 28.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.081 3.919 3 H 0.119 0.881 4 N -0.866 5.866 5 S 2.723 3.277 6 O -0.985 6.985 7 O -0.979 6.979 8 C -0.740 4.740 9 C -0.146 4.146 10 C -0.006 4.006 11 C -0.590 4.590 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.568 5.568 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.140 4.140 20 C -0.083 4.083 21 C -0.149 4.149 22 C -0.071 4.071 23 N -0.184 5.184 24 N -0.118 5.118 25 H 0.307 0.693 26 C -0.043 4.043 27 C -0.248 4.248 28 C -0.047 4.047 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.261 0.739 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.254 0.746 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.342 -9.902 -25.856 29.221 hybrid contribution -0.796 0.677 0.811 1.323 sum 8.546 -9.225 -25.045 28.025 Atomic orbital electron populations 1.22499 0.93227 1.04114 1.03754 1.19824 0.94732 0.95875 0.81474 0.88057 1.55494 1.84077 1.20154 1.26829 1.04266 0.76783 0.73675 0.72984 1.93534 1.80641 1.59967 1.64335 1.93530 1.62905 1.61647 1.79797 1.30624 1.22244 1.12591 1.08535 1.21314 1.00761 0.98357 0.94137 1.18950 0.92007 0.94715 0.94948 1.21725 0.94771 1.30563 1.11982 0.92260 1.25913 0.94905 0.97858 1.00877 1.70056 1.00316 1.44507 1.41958 0.85562 0.77557 0.78992 0.79334 1.19238 1.20695 1.19382 1.19230 1.05158 0.93832 0.95742 1.20627 0.96255 0.93646 0.97736 1.20005 1.03950 0.99882 0.91042 1.21308 0.97939 0.94323 0.93534 1.77598 1.28622 1.06127 1.06049 1.46388 1.45567 1.03407 1.16437 0.69331 1.23500 0.95297 0.95082 0.90465 1.19946 1.14067 0.92996 0.97749 1.20388 0.93841 1.00383 0.90111 0.90780 0.91490 0.89774 0.73921 0.83223 0.83337 0.91797 0.91503 0.97603 0.97875 0.92679 0.83985 0.84869 0.74578 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.46 71.98 0.68 -1.88 16 2 C 0.19 3.20 2.98 44.25 0.13 3.33 16 3 H 0.10 1.72 7.26 -2.39 -0.02 1.71 16 4 N -1.10 -21.56 5.31 -172.52 -0.92 -22.48 16 5 S 2.63 72.79 5.44 -56.49 -0.31 72.48 16 6 O -0.99 -34.01 18.08 -127.65 -2.31 -36.32 16 7 O -0.99 -33.15 17.38 -127.65 -2.22 -35.37 16 8 C -0.61 -17.29 5.26 71.98 0.38 -16.91 16 9 C -0.11 -4.21 5.16 30.60 0.16 -4.05 16 10 C 0.03 1.62 4.97 29.85 0.15 1.77 16 11 C -0.55 -31.09 9.11 25.60 0.23 -30.85 16 12 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 13 C 0.00 0.16 5.46 84.66 0.46 0.62 16 14 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 15 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 19 C -0.14 -2.36 4.92 -20.11 -0.10 -2.45 16 20 C -0.06 -1.03 8.99 22.02 0.20 -0.83 16 21 C -0.13 -2.48 10.08 22.38 0.23 -2.25 16 22 C 0.08 1.74 7.49 42.16 0.32 2.06 16 23 N -0.35 -7.34 12.70 -48.70 -0.62 -7.96 16 24 N -0.42 -4.53 7.18 -56.35 -0.40 -4.93 16 25 H 0.46 1.31 8.96 -213.42 -1.91 -0.60 16 26 C 0.12 1.03 12.07 84.37 1.02 2.05 16 27 C -0.24 -3.95 6.33 -20.23 -0.13 -4.08 16 28 C -0.03 -0.42 9.65 22.38 0.22 -0.20 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.02 5.82 -2.39 -0.01 1.00 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.42 6.79 6.95 -96.74 -0.67 6.12 16 33 H 0.15 3.59 6.79 -2.39 -0.02 3.58 16 34 H 0.15 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.14 1.81 6.71 -2.91 -0.02 1.79 16 41 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.24 -0.42 8.06 -2.91 -0.02 -0.44 16 43 H 0.15 1.61 7.98 -2.92 -0.02 1.59 16 Total: -1.00 -83.92 371.80 -2.05 -85.97 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -1.53 Total: 11.18 kcal Atomic # 6 Polarization: -57.63 SS G_CDS: 3.94 Total: -53.69 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -1.65 Total: -90.18 kcal Atomic # 8 Polarization: -67.16 SS G_CDS: -4.53 Total: -71.69 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 72.79 SS G_CDS: -0.31 Total: 72.48 kcal Total: -83.92 -2.05 -85.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352501992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.791 kcal (2) G-P(sol) polarization free energy of solvation -83.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds