Wall clock time and date at job start Tue Mar 31 2020 20:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47244 * 2 1 4 4 N 1.46496 * 109.47592 * 239.99775 * 2 1 3 5 5 S 1.65599 * 120.00146 * 95.00107 * 4 2 1 6 6 O 1.42105 * 104.27655 * 308.92954 * 5 4 2 7 7 O 1.42101 * 104.27764 * 181.07391 * 5 4 2 8 8 C 1.81395 * 104.44748 * 65.00260 * 5 4 2 9 9 C 1.52999 * 109.46986 * 180.02562 * 8 5 4 10 10 C 1.53002 * 109.47213 * 180.02562 * 9 8 5 11 11 C 1.50706 * 109.47044 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99731 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47633 * 59.99291 * 15 13 11 17 17 H 1.48504 * 109.47025 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47285 * 299.99307 * 15 13 11 19 19 C 1.50701 * 109.46752 * 119.99755 * 2 1 3 20 20 C 1.39680 * 119.13499 * 79.72876 * 19 2 1 21 21 C 1.35639 * 121.81361 * 179.72324 * 20 19 2 22 22 C 1.41158 * 119.59517 * 0.56238 * 21 20 19 23 23 N 1.32059 * 134.67861 * 179.72646 * 22 21 20 24 24 N 1.39951 * 108.95880 * 179.97438 * 23 22 21 25 25 H 0.97007 * 125.02207 * 180.02562 * 24 23 22 26 26 C 1.33983 * 109.95958 * 0.02562 * 24 23 22 27 27 C 1.38250 * 107.90622 * 0.02562 * 26 24 23 28 28 C 1.35655 * 119.13419 * 259.99946 * 19 2 1 29 29 H 1.08999 * 109.47479 * 300.00293 * 1 2 3 30 30 H 1.09006 * 109.46829 * 60.00396 * 1 2 3 31 31 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99851 * 275.00634 * 4 2 1 33 33 H 1.09003 * 109.47393 * 299.99669 * 8 5 4 34 34 H 1.08994 * 109.47678 * 60.00285 * 8 5 4 35 35 H 1.09004 * 109.47080 * 299.99725 * 9 8 5 36 36 H 1.09005 * 109.47285 * 59.99790 * 9 8 5 37 37 H 1.09003 * 109.47218 * 299.99466 * 10 9 8 38 38 H 1.08995 * 109.47220 * 59.99596 * 10 9 8 39 39 H 0.97002 * 119.99124 * 180.02562 * 14 13 11 40 40 H 1.07999 * 119.09525 * 0.02712 * 20 19 2 41 41 H 1.07996 * 120.20788 * 180.24672 * 21 20 19 42 42 H 1.08003 * 126.04888 * 180.02562 * 26 24 23 43 43 H 1.08004 * 120.23431 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4123 0.1771 -2.5504 6 8 1.2752 0.9965 -2.7846 7 8 2.8124 -0.8077 -3.4935 8 6 3.8314 1.1871 -2.0439 9 6 4.2936 2.0451 -3.2233 10 6 5.4909 2.8966 -2.7964 11 6 5.9457 3.7422 -3.9580 12 1 5.4324 3.6784 -4.9060 13 6 7.0178 4.5965 -3.8106 14 7 7.6432 4.6739 -2.6563 15 14 7.5820 5.6441 -5.2506 16 1 6.4724 6.5318 -5.6818 17 1 8.7441 6.4706 -4.8361 18 1 7.9779 4.7631 -6.3786 19 6 2.0322 -0.7104 1.2305 20 6 2.0537 -2.1069 1.2484 21 6 2.4998 -2.8014 2.3247 22 6 2.9460 -2.1043 3.4682 23 7 3.4219 -2.4622 4.6469 24 7 3.7031 -1.3114 5.3921 25 1 4.0632 -1.3057 6.2929 26 6 3.4015 -0.2188 4.6777 27 6 2.9166 -0.6334 3.4512 28 6 2.4463 0.0232 2.2938 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 2.1110 -1.6562 -1.1947 33 1 3.5400 1.8342 -1.2165 34 1 4.6460 0.5362 -1.7266 35 1 4.5849 1.3984 -4.0510 36 1 3.4788 2.6962 -3.5403 37 1 5.2001 3.5434 -1.9686 38 1 6.3054 2.2452 -2.4797 39 1 8.3972 5.2752 -2.5526 40 1 1.7103 -2.6486 0.3795 41 1 2.5087 -3.8812 2.3090 42 1 3.5168 0.8048 5.0025 43 1 2.4147 1.1021 2.2556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352501993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:14 Heat of formation + Delta-G solvation = 4.675461 kcal Electronic energy + Delta-G solvation = -26215.654582 eV Core-core repulsion = 22389.011889 eV Total energy + Delta-G solvation = -3826.642693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56232 -38.68063 -36.84921 -35.73943 -35.38646 -34.65320 -32.44751 -32.17642 -30.86105 -30.21247 -28.38936 -27.79277 -24.67679 -23.73751 -23.36171 -21.09332 -20.96230 -20.63708 -19.24178 -18.39875 -17.67002 -17.03998 -16.66076 -16.47806 -15.67890 -15.41775 -15.20197 -15.02489 -14.48743 -14.45761 -14.17588 -14.04424 -13.67576 -13.42807 -13.05731 -12.62808 -12.52440 -12.27405 -11.96449 -11.90865 -11.80968 -11.75290 -11.72947 -11.58479 -11.23088 -11.13609 -10.88978 -10.85600 -10.60892 -10.56152 -10.42374 -9.93267 -9.76552 -9.32067 -9.08633 -9.03770 -8.39877 -7.87804 -6.05231 -4.08119 0.30247 0.51872 1.50192 2.13415 2.36540 2.88688 3.32480 3.36225 3.39593 3.55392 3.88904 4.01192 4.31196 4.42800 4.43508 4.49313 4.71115 4.82713 4.92679 5.08321 5.09524 5.19222 5.23290 5.29889 5.31065 5.33078 5.39565 5.72390 5.79383 5.90627 5.96477 6.09213 6.17763 6.20390 6.28823 6.43224 6.47665 6.57247 6.71366 6.88503 6.94406 7.25768 7.57770 7.68152 7.92964 8.33635 8.97966 9.56465 11.05948 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.002811 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.455134 B = 9957.372009 C =11722.623218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.196 3.804 3 H 0.092 0.908 4 N -1.119 6.119 5 S 2.599 3.401 6 O -0.960 6.960 7 O -0.964 6.964 8 C -0.610 4.610 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.124 4.124 20 C -0.061 4.061 21 C -0.104 4.104 22 C 0.106 3.894 23 N -0.310 5.310 24 N -0.427 5.427 25 H 0.444 0.556 26 C 0.087 3.913 27 C -0.205 4.205 28 C -0.030 4.030 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.190 0.810 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 -12.019 17.135 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.089 3.911 3 H 0.110 0.890 4 N -0.876 5.876 5 S 2.695 3.305 6 O -0.949 6.949 7 O -0.954 6.954 8 C -0.741 4.741 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.127 4.127 20 C -0.084 4.084 21 C -0.125 4.125 22 C -0.048 4.048 23 N -0.138 5.138 24 N -0.127 5.127 25 H 0.288 0.712 26 C -0.070 4.070 27 C -0.215 4.215 28 C -0.051 4.051 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.207 0.793 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.541 -12.838 17.159 24.830 hybrid contribution 1.036 1.096 -0.021 1.508 sum -11.505 -11.742 17.139 23.748 Atomic orbital electron populations 1.22318 0.93989 1.02924 1.03311 1.19586 0.94688 0.94949 0.81862 0.89022 1.55910 1.82398 1.19410 1.29910 1.05348 0.76850 0.75054 0.73212 1.93571 1.47281 1.70493 1.83599 1.93578 1.84608 1.58223 1.59010 1.30553 1.18810 1.14074 1.10705 1.21497 1.02020 0.97793 0.93203 1.19052 0.90850 0.93867 0.96931 1.21229 1.14579 1.22904 0.97767 0.92420 1.25014 0.96403 0.97049 0.95883 1.69951 1.21743 1.38096 1.23681 0.86620 0.78181 0.80340 0.82670 1.20115 1.21273 1.20117 1.19293 1.03847 0.93770 0.95802 1.20422 0.97023 0.93450 0.97520 1.19841 1.02617 0.99403 0.90634 1.20987 0.97652 0.92992 0.93214 1.77680 1.26603 1.04106 1.05429 1.46332 1.46441 1.04003 1.15917 0.71216 1.22773 0.98554 0.93575 0.92101 1.19572 1.12281 0.93511 0.96155 1.20108 0.95223 0.99311 0.90487 0.91516 0.90438 0.92034 0.75159 0.85609 0.85239 0.91615 0.91556 0.96149 0.96146 0.92879 0.85518 0.85282 0.79282 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.49 37.16 0.35 -1.14 16 2 C 0.20 1.85 2.84 -69.09 -0.20 1.66 16 3 H 0.09 0.79 6.94 -51.93 -0.36 0.43 16 4 N -1.12 -11.70 5.31 -5.88 -0.03 -11.74 16 5 S 2.60 37.08 5.38 -107.50 -0.58 36.50 16 6 O -0.96 -16.01 17.11 -57.54 -0.98 -17.00 16 7 O -0.96 -16.75 18.08 -57.54 -1.04 -17.79 16 8 C -0.61 -9.21 5.96 37.16 0.22 -8.99 16 9 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 10 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 11 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.12 -1.14 4.92 -105.01 -0.52 -1.66 16 20 C -0.06 -0.54 8.98 -39.97 -0.36 -0.90 16 21 C -0.10 -1.01 10.08 -39.40 -0.40 -1.41 16 22 C 0.11 1.17 7.49 -83.05 -0.62 0.55 16 23 N -0.31 -3.41 12.70 33.26 0.42 -2.99 16 24 N -0.43 -3.00 7.18 30.84 0.22 -2.78 16 25 H 0.44 1.42 8.96 -182.70 -1.64 -0.21 16 26 C 0.09 0.58 12.08 -16.61 -0.20 0.38 16 27 C -0.21 -1.96 6.33 -105.19 -0.67 -2.62 16 28 C -0.03 -0.27 9.65 -39.41 -0.38 -0.65 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.82 7.43 -51.93 -0.39 0.44 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.41 3.61 6.96 -34.47 -0.24 3.37 16 33 H 0.13 1.64 7.44 -51.92 -0.39 1.26 16 34 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 0.87 6.73 -52.49 -0.35 0.52 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.19 0.47 8.06 -52.48 -0.42 0.04 16 43 H 0.13 0.88 7.98 -52.48 -0.42 0.46 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -38.18 374.02 -11.22 -49.40 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.13 Total: -0.09 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -3.45 Total: -29.95 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 1.35 Total: -43.21 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -2.02 Total: -34.78 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 37.08 SS G_CDS: -0.58 Total: 36.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.18 -11.22 -49.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352501993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.073 kcal (2) G-P(sol) polarization free energy of solvation -38.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds