Wall clock time and date at job start Tue Mar 31 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46959 * 2 1 4 4 C 1.50701 * 109.47031 * 240.00339 * 2 1 3 5 5 C 1.38381 * 119.92275 * 285.83085 * 4 2 1 6 6 C 1.38339 * 120.30833 * 179.97438 * 5 4 2 7 7 C 1.37968 * 120.14935 * 359.97438 * 6 5 4 8 8 C 1.39610 * 119.84770 * 0.02562 * 7 6 5 9 9 C 1.43199 * 120.15134 * 179.97438 * 8 7 6 10 10 N 5.95831 * 114.84142 * 277.39543 * 2 1 3 11 11 C 1.37924 * 119.92503 * 105.55883 * 4 2 1 12 12 N 1.46499 * 109.47147 * 120.00115 * 2 1 3 13 13 C 1.46497 * 120.00182 * 38.32390 * 12 2 1 14 14 S 1.65601 * 119.99585 * 218.32561 * 12 2 1 15 15 O 1.42097 * 106.40051 * 147.13706 * 14 12 2 16 16 O 1.42098 * 106.40862 * 14.21430 * 14 12 2 17 17 N 1.65605 * 107.21764 * 260.67588 * 14 12 2 18 18 C 1.46498 * 120.00280 * 97.82580 * 17 14 12 19 19 C 1.46501 * 119.99502 * 277.83023 * 17 14 12 20 20 C 1.50699 * 109.47320 * 94.97870 * 19 17 14 21 21 H 1.07998 * 120.00121 * 355.33762 * 20 19 17 22 22 C 1.37877 * 119.99823 * 175.33644 * 20 19 17 23 23 N 1.31519 * 119.99828 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00225 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47217 * 90.00150 * 24 22 20 26 26 H 1.48502 * 109.47149 * 209.99929 * 24 22 20 27 27 H 1.48503 * 109.47274 * 329.99723 * 24 22 20 28 28 H 1.08997 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46860 * 300.00128 * 1 2 3 30 30 H 1.09004 * 109.46852 * 60.00199 * 1 2 3 31 31 H 1.08010 * 119.84557 * 0.02562 * 5 4 2 32 32 H 1.08005 * 119.92847 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.07889 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.08110 * 359.97438 * 11 4 2 35 35 H 1.08997 * 109.47063 * 275.80562 * 13 12 2 36 36 H 1.09002 * 109.46793 * 35.79860 * 13 12 2 37 37 H 1.08993 * 109.47249 * 155.80267 * 13 12 2 38 38 H 1.09002 * 109.46733 * 89.99864 * 18 17 14 39 39 H 1.08994 * 109.47058 * 210.00417 * 18 17 14 40 40 H 1.09002 * 109.46481 * 330.00493 * 18 17 14 41 41 H 1.09009 * 109.46719 * 214.97423 * 19 17 14 42 42 H 1.08999 * 109.47425 * 334.97471 * 19 17 14 43 43 H 0.97003 * 119.99899 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 1.9540 -2.0895 -1.3117 6 6 2.4122 -2.7497 -2.4378 7 6 2.9505 -2.0359 -3.4886 8 6 3.0327 -0.6443 -3.4134 9 6 3.5907 0.1031 -4.5000 10 7 4.0332 0.6960 -5.3620 11 6 2.5640 0.0161 -2.2755 12 7 2.0184 -0.6906 1.1961 13 6 1.3242 -1.8832 1.6882 14 16 3.3551 -0.1232 1.9920 15 8 3.1537 -0.4093 3.3692 16 8 3.5906 1.1878 1.4970 17 7 4.6427 -1.0445 1.5064 18 6 5.5362 -0.5572 0.4527 19 6 4.8880 -2.3470 2.1305 20 6 4.2575 -3.4312 1.2951 21 1 3.6635 -3.1709 0.4315 22 6 4.4388 -4.7555 1.6333 23 7 3.8889 -5.7017 0.9039 24 14 5.4667 -5.2058 3.1266 25 1 4.5933 -5.2770 4.3255 26 1 6.1109 -6.5253 2.9045 27 1 6.5131 -4.1733 3.3370 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.5323 -2.6531 -0.4925 32 1 2.3477 -3.8263 -2.4948 33 1 3.3075 -2.5524 -4.3673 34 1 2.6202 1.0928 -2.2129 35 1 0.4859 -1.5822 2.3164 36 1 0.9546 -2.4632 0.8426 37 1 2.0155 -2.4912 2.2715 38 1 6.3484 0.0150 0.9010 39 1 5.9480 -1.4047 -0.0952 40 1 4.9768 0.0808 -0.2316 41 1 5.9621 -2.5201 2.1999 42 1 4.4528 -2.3589 3.1298 43 1 4.0162 -6.6334 1.1420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425225215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:17 Heat of formation + Delta-G solvation = -5.703257 kcal Electronic energy + Delta-G solvation = -28749.831384 eV Core-core repulsion = 24922.738636 eV Total energy + Delta-G solvation = -3827.092748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.74989 -37.13361 -36.81021 -35.96002 -35.65427 -35.34866 -32.51883 -31.81863 -31.13250 -29.20936 -28.44340 -26.50304 -25.19492 -23.74134 -23.11974 -21.95653 -21.04606 -18.88159 -17.89505 -17.47444 -17.03709 -16.71570 -16.30344 -15.82205 -15.33688 -14.93272 -14.57292 -14.24140 -13.96626 -13.76787 -13.64576 -13.42685 -13.17935 -13.04511 -12.72363 -12.57963 -12.48728 -12.41939 -12.33409 -12.16838 -11.94615 -11.85289 -11.64249 -11.52956 -11.43671 -11.27519 -11.24556 -10.87880 -10.76731 -10.70000 -10.44611 -10.21381 -9.64182 -8.83671 -8.80479 -8.72275 -8.64154 -8.11308 -6.24103 -4.23505 0.90507 1.11174 1.42570 2.68193 3.02628 3.20559 3.27338 3.32259 3.35733 3.90806 3.93529 4.03031 4.29038 4.68257 4.81681 4.93070 5.02698 5.09157 5.17433 5.24856 5.35235 5.39165 5.54260 5.57583 5.73098 5.84030 5.85279 5.98594 6.01111 6.03957 6.09618 6.18564 6.33246 6.36484 6.40516 6.42463 6.62788 6.70062 6.79421 6.87516 6.96141 7.08558 7.33241 7.48979 7.50114 8.34173 8.81385 9.38081 10.87163 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010601 B = 0.005654 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.644522 B = 4951.399692 C = 5928.598036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.185 3.815 3 H 0.106 0.894 4 C -0.107 4.107 5 C -0.056 4.056 6 C -0.106 4.106 7 C -0.069 4.069 8 C -0.043 4.043 9 C 0.264 3.736 10 N -0.433 5.433 11 C -0.065 4.065 12 N -0.997 5.997 13 C 0.089 3.911 14 S 2.786 3.214 15 O -0.981 6.981 16 O -0.995 6.995 17 N -0.989 5.989 18 C 0.107 3.893 19 C 0.210 3.790 20 C -0.542 4.542 21 H 0.091 0.909 22 C 0.080 3.920 23 N -0.890 5.890 24 Si 0.863 3.137 25 H -0.273 1.273 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.561 6.523 -3.791 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.078 3.922 3 H 0.124 0.876 4 C -0.109 4.109 5 C -0.074 4.074 6 C -0.124 4.124 7 C -0.090 4.090 8 C -0.046 4.046 9 C -0.051 4.051 10 N -0.109 5.109 11 C -0.087 4.087 12 N -0.835 5.835 13 C -0.055 4.055 14 S 2.796 3.204 15 O -0.965 6.965 16 O -0.980 6.980 17 N -0.830 5.830 18 C -0.039 4.039 19 C 0.086 3.914 20 C -0.581 4.581 21 H 0.109 0.891 22 C -0.124 4.124 23 N -0.528 5.528 24 Si 0.691 3.309 25 H -0.198 1.198 26 H -0.212 1.212 27 H -0.189 1.189 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.855 7.952 -4.487 10.846 hybrid contribution 0.582 -1.219 0.724 1.532 sum -5.273 6.733 -3.764 9.343 Atomic orbital electron populations 1.22050 0.93188 1.03179 1.02396 1.19736 0.95457 0.95579 0.81425 0.87597 1.20237 1.00427 0.94503 0.95743 1.21704 0.94879 0.93574 0.97271 1.21187 0.97695 1.00787 0.92776 1.21165 0.97081 0.91556 0.99184 1.15886 1.05370 0.92223 0.91126 1.25798 0.93137 0.93175 0.92959 1.81216 1.09936 1.08935 1.10794 1.20975 0.96251 0.99915 0.91525 1.57947 1.45914 1.40118 1.39496 1.21722 0.98136 0.86085 0.99593 1.01764 0.72483 0.72658 0.73523 1.93569 1.85523 1.85667 1.31708 1.93516 1.85330 1.37155 1.81979 1.57388 1.42140 1.33013 1.50485 1.21228 0.93414 0.99308 0.89977 1.19656 0.98280 0.79731 0.93720 1.21543 1.33116 0.89483 1.13928 0.89099 1.24799 0.95070 0.96387 0.96111 1.69856 1.44086 1.00182 1.38687 0.87042 0.81591 0.78303 0.84011 1.19846 1.21178 1.18932 0.91432 0.91673 0.91402 0.83787 0.84571 0.85464 0.85205 0.93393 0.90893 0.88773 0.93920 0.90652 0.92339 0.94563 0.94306 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.72 37.16 0.32 -1.13 16 2 C 0.18 2.32 2.94 -69.08 -0.20 2.11 16 3 H 0.11 1.33 6.59 -51.93 -0.34 0.99 16 4 C -0.11 -1.35 4.94 -104.68 -0.52 -1.87 16 5 C -0.06 -0.75 8.13 -39.49 -0.32 -1.07 16 6 C -0.11 -1.37 10.03 -39.64 -0.40 -1.77 16 7 C -0.07 -0.82 9.76 -39.17 -0.38 -1.20 16 8 C -0.04 -0.52 5.73 -106.93 -0.61 -1.13 16 9 C 0.26 3.50 15.33 -22.47 -0.34 3.16 16 10 N -0.43 -6.54 18.54 41.84 0.78 -5.77 16 11 C -0.07 -0.78 9.37 -39.17 -0.37 -1.14 16 12 N -1.00 -15.12 2.99 -115.85 -0.35 -15.47 16 13 C 0.09 1.32 8.50 59.85 0.51 1.83 16 14 S 2.79 51.26 5.97 -107.50 -0.64 50.62 16 15 O -0.98 -20.78 16.19 -57.17 -0.93 -21.70 16 16 O -1.00 -18.75 15.34 -57.17 -0.88 -19.63 16 17 N -0.99 -18.74 3.23 -123.05 -0.40 -19.14 16 18 C 0.11 1.77 10.34 59.85 0.62 2.39 16 19 C 0.21 4.51 4.46 -5.19 -0.02 4.48 16 20 C -0.54 -12.57 8.65 -34.44 -0.30 -12.86 16 21 H 0.09 2.13 7.01 -52.49 -0.37 1.76 16 22 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.89 -23.14 13.96 55.43 0.77 -22.37 16 24 Si 0.86 19.33 27.56 -169.99 -4.69 14.65 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.26 -5.78 6.41 56.52 0.36 -5.42 16 28 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 2.04 4.51 -52.48 -0.24 1.81 16 32 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.35 7.99 -52.49 -0.42 0.93 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.97 4.47 -51.93 -0.23 0.74 16 37 H 0.09 1.67 6.55 -51.93 -0.34 1.33 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 40 H 0.06 0.89 7.58 -51.93 -0.39 0.50 16 41 H 0.04 0.79 6.84 -51.92 -0.36 0.43 16 42 H 0.04 0.87 6.70 -51.93 -0.35 0.52 16 43 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -29.09 366.97 -8.43 -37.52 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.52 Total: 2.09 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.11 Total: -6.34 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.81 Total: -62.74 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.80 Total: -41.33 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.69 Total: 14.65 kcal Atomic # 16 Polarization: 51.26 SS G_CDS: -0.64 Total: 50.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.09 -8.43 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425225215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.815 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds