Wall clock time and date at job start Tue Mar 31 2020 20:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47139 * 2 1 4 4 C 1.50703 * 109.46939 * 119.99761 * 2 1 3 5 5 C 1.38384 * 119.92273 * 62.64268 * 4 2 1 6 6 C 1.38348 * 120.30545 * 179.76373 * 5 4 2 7 7 C 1.37965 * 120.14792 * 0.50881 * 6 5 4 8 8 C 1.39619 * 119.84606 * 359.74719 * 7 6 5 9 9 C 1.43202 * 120.14560 * 179.97438 * 8 7 6 10 10 N 5.95828 * 121.25786 * 83.37225 * 2 1 3 11 11 C 1.37927 * 119.92459 * 242.91246 * 4 2 1 12 12 N 1.46497 * 109.47198 * 239.99580 * 2 1 3 13 13 C 1.46502 * 120.00402 * 250.21096 * 12 2 1 14 14 S 1.65605 * 119.99506 * 70.21363 * 12 2 1 15 15 O 1.42100 * 106.40121 * 209.86997 * 14 12 2 16 16 O 1.42095 * 106.40593 * 342.79311 * 14 12 2 17 17 N 1.65606 * 107.21633 * 96.33288 * 14 12 2 18 18 C 1.46501 * 119.99785 * 95.29141 * 17 14 12 19 19 C 1.46495 * 119.99958 * 275.28972 * 17 14 12 20 20 C 1.50704 * 109.47168 * 96.82486 * 19 17 14 21 21 H 1.08003 * 119.99762 * 4.88473 * 20 19 17 22 22 C 1.37876 * 120.00198 * 184.87745 * 20 19 17 23 23 N 1.31518 * 119.99506 * 5.20152 * 22 20 19 24 24 Si 1.86791 * 120.00071 * 185.19333 * 22 20 19 25 25 H 1.48502 * 109.47224 * 65.01180 * 24 22 20 26 26 H 1.48508 * 109.47054 * 185.01081 * 24 22 20 27 27 H 1.48501 * 109.47207 * 305.00846 * 24 22 20 28 28 H 1.09004 * 109.47199 * 60.00202 * 1 2 3 29 29 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47595 * 299.99855 * 1 2 3 31 31 H 1.07999 * 119.84823 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.92544 * 180.25302 * 6 5 4 33 33 H 1.08002 * 120.07751 * 179.72432 * 7 6 5 34 34 H 1.08003 * 120.07460 * 0.02562 * 11 4 2 35 35 H 1.08998 * 109.46386 * 84.60769 * 13 12 2 36 36 H 1.08993 * 109.47007 * 204.60590 * 13 12 2 37 37 H 1.08994 * 109.47071 * 324.61094 * 13 12 2 38 38 H 1.09002 * 109.46976 * 90.00151 * 18 17 14 39 39 H 1.09008 * 109.46868 * 209.99959 * 18 17 14 40 40 H 1.09000 * 109.47137 * 329.99546 * 18 17 14 41 41 H 1.08995 * 109.46972 * 216.82515 * 19 17 14 42 42 H 1.09004 * 109.47239 * 336.82565 * 19 17 14 43 43 H 0.97008 * 119.99598 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7427 -2.0502 1.4207 6 6 2.2040 -2.7113 2.5450 7 6 2.9477 -2.0352 3.4901 8 6 3.2391 -0.6821 3.3072 9 6 4.0100 0.0260 4.2843 10 7 4.6217 0.5879 5.0593 11 6 2.7748 -0.0223 2.1673 12 7 2.0183 -0.6907 -1.1961 13 6 2.6675 -1.9983 -1.0733 14 16 1.8366 0.0068 -2.6871 15 8 1.7201 -1.0606 -3.6178 16 8 0.8511 1.0197 -2.5389 17 7 3.2558 0.7833 -3.0413 18 6 4.2782 0.1098 -3.8459 19 6 3.4888 2.1436 -2.5500 20 6 4.2999 2.0875 -1.2811 21 1 4.6778 1.1411 -0.9233 22 6 4.5597 3.2442 -0.5772 23 7 4.0156 4.3802 -0.9554 24 14 5.6844 3.1977 0.9134 25 1 7.0590 2.8339 0.4853 26 1 5.7047 4.5345 1.5601 27 1 5.1834 2.1878 1.8802 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.1569 -2.5830 0.6864 32 1 1.9778 -3.7580 2.6853 33 1 3.3034 -2.5514 4.3696 34 1 2.9960 1.0245 2.0200 35 1 1.9083 -2.7801 -1.0518 36 1 3.3286 -2.1571 -1.9251 37 1 3.2483 -2.0304 -0.1515 38 1 4.1095 0.3242 -4.9012 39 1 5.2650 0.4702 -3.5551 40 1 4.2208 -0.9659 -3.6799 41 1 4.0319 2.7139 -3.3035 42 1 2.5323 2.6261 -2.3487 43 1 4.1981 5.1940 -0.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425225217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:19 Heat of formation + Delta-G solvation = -8.477259 kcal Electronic energy + Delta-G solvation = -28495.232598 eV Core-core repulsion = 24668.019561 eV Total energy + Delta-G solvation = -3827.213038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02264 -37.11817 -36.73382 -35.91213 -35.51748 -35.25500 -32.54997 -31.88061 -31.36344 -29.64251 -27.83295 -25.85685 -25.09669 -24.01904 -23.44686 -22.30346 -21.28151 -18.68516 -17.99989 -17.24559 -16.88007 -16.48773 -16.37515 -15.86141 -15.42788 -14.99368 -14.55292 -14.27668 -14.14859 -13.86900 -13.58299 -13.42040 -13.18054 -13.14107 -12.93369 -12.72376 -12.50918 -12.25229 -12.21919 -12.10452 -11.93729 -11.74095 -11.66314 -11.53699 -11.35480 -11.21599 -11.12891 -10.92229 -10.84687 -10.57429 -10.43257 -10.14812 -9.85034 -9.06637 -8.94552 -8.65092 -8.54261 -8.07179 -6.17845 -4.24092 0.69646 1.09300 1.33262 2.68114 2.89759 3.19089 3.27605 3.30273 3.42311 3.82708 3.86421 4.06097 4.29521 4.54576 4.75516 4.90150 4.91317 5.09731 5.15400 5.19040 5.28226 5.43721 5.48724 5.56680 5.66376 5.71107 5.83241 5.87888 5.94871 6.03301 6.05054 6.16235 6.20645 6.23049 6.27789 6.48782 6.56973 6.60316 6.73588 6.86232 7.28137 7.38605 7.48998 7.58360 7.79829 8.09663 8.81725 9.41806 10.89600 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.006661 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.793725 B = 4202.832997 C = 6291.513526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.193 3.807 3 H 0.108 0.892 4 C -0.078 4.078 5 C -0.075 4.075 6 C -0.128 4.128 7 C -0.071 4.071 8 C -0.034 4.034 9 C 0.258 3.742 10 N -0.422 5.422 11 C -0.048 4.048 12 N -1.000 6.000 13 C 0.092 3.908 14 S 2.787 3.213 15 O -0.998 6.998 16 O -0.973 6.973 17 N -0.997 5.997 18 C 0.105 3.895 19 C 0.244 3.756 20 C -0.539 4.539 21 H 0.063 0.937 22 C 0.068 3.932 23 N -0.885 5.885 24 Si 0.885 3.115 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 -14.654 3.378 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 H 0.126 0.874 4 C -0.079 4.079 5 C -0.094 4.094 6 C -0.146 4.146 7 C -0.091 4.091 8 C -0.038 4.038 9 C -0.058 4.058 10 N -0.097 5.097 11 C -0.070 4.070 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.797 3.203 15 O -0.982 6.982 16 O -0.958 6.958 17 N -0.839 5.839 18 C -0.042 4.042 19 C 0.122 3.878 20 C -0.579 4.579 21 H 0.081 0.919 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.712 3.288 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.200 1.200 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.433 -13.601 4.049 14.867 hybrid contribution 1.076 -0.058 0.883 1.393 sum -3.357 -13.659 4.931 14.905 Atomic orbital electron populations 1.22527 0.94351 1.02285 1.04610 1.19789 0.93824 0.96649 0.80986 0.87390 1.19771 0.98004 0.94241 0.95887 1.21461 0.97270 0.93979 0.96703 1.21009 0.99231 1.00276 0.94129 1.21129 0.96813 0.91980 0.99210 1.15975 1.01397 0.93245 0.93147 1.25726 0.93393 0.93489 0.93160 1.81215 1.09697 1.08101 1.10716 1.21325 0.93505 1.01051 0.91070 1.58021 1.73555 1.28808 1.23459 1.21621 0.96954 0.83762 1.03064 1.01792 0.73782 0.72456 0.72290 1.93536 1.86850 1.56833 1.60958 1.93547 1.57517 1.58606 1.86088 1.57688 1.34635 1.27137 1.64448 1.21247 0.93273 0.95541 0.94132 1.19223 0.98672 0.75684 0.94254 1.21499 1.34179 0.93884 1.08326 0.91901 1.24910 0.95756 0.95470 0.97391 1.69926 1.42533 0.99339 1.40527 0.86802 0.81758 0.77441 0.82779 1.20232 1.21198 1.19963 0.89298 0.92581 0.91239 0.84769 0.84991 0.85279 0.84117 0.92927 0.91636 0.90749 0.93806 0.90819 0.92804 0.94922 0.92653 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.11 37.16 0.34 -2.09 16 2 C 0.19 2.91 2.85 -69.08 -0.20 2.71 16 3 H 0.11 1.94 7.87 -51.93 -0.41 1.53 16 4 C -0.08 -0.98 3.91 -104.68 -0.41 -1.39 16 5 C -0.08 -0.73 6.58 -39.49 -0.26 -0.99 16 6 C -0.13 -1.05 10.03 -39.64 -0.40 -1.44 16 7 C -0.07 -0.66 9.76 -39.17 -0.38 -1.04 16 8 C -0.03 -0.43 5.73 -106.93 -0.61 -1.04 16 9 C 0.26 3.85 15.33 -22.47 -0.34 3.50 16 10 N -0.42 -7.25 18.54 41.84 0.78 -6.47 16 11 C -0.05 -0.67 9.38 -39.17 -0.37 -1.04 16 12 N -1.00 -15.47 3.31 -115.86 -0.38 -15.85 16 13 C 0.09 1.13 8.56 59.85 0.51 1.64 16 14 S 2.79 52.34 5.90 -107.50 -0.63 51.71 16 15 O -1.00 -19.40 16.24 -57.17 -0.93 -20.33 16 16 O -0.97 -20.70 13.80 -57.17 -0.79 -21.49 16 17 N -1.00 -19.71 3.23 -123.05 -0.40 -20.11 16 18 C 0.10 1.74 10.32 59.85 0.62 2.35 16 19 C 0.24 5.75 5.44 -5.19 -0.03 5.72 16 20 C -0.54 -13.25 9.36 -34.44 -0.32 -13.58 16 21 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 22 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 23 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 24 Si 0.88 20.38 29.54 -169.99 -5.02 15.36 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.09 1.41 5.87 -51.93 -0.30 1.10 16 29 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.13 1.11 6.10 -52.49 -0.32 0.79 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 2.21 7.94 -52.48 -0.42 1.79 16 35 H 0.05 0.53 7.01 -51.93 -0.36 0.16 16 36 H 0.06 0.80 7.40 -51.93 -0.38 0.41 16 37 H 0.07 0.85 5.58 -51.93 -0.29 0.56 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 40 H 0.05 0.78 7.28 -51.93 -0.38 0.40 16 41 H 0.03 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.06 1.43 6.95 -51.93 -0.36 1.07 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -31.10 371.25 -8.69 -39.79 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.70 Total: 0.42 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.95 Total: -5.02 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: 0.73 Total: -66.04 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.72 Total: -41.82 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 52.34 SS G_CDS: -0.63 Total: 51.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.10 -8.69 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425225217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.318 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds