Wall clock time and date at job start Tue Mar 31 2020 20:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47391 * 2 1 4 4 N 1.46897 * 109.46969 * 120.00324 * 2 1 3 5 5 C 1.46897 * 110.99963 * 274.99294 * 4 2 1 6 6 C 1.53005 * 109.46985 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.47098 * 55.00104 * 6 5 4 8 8 C 1.47203 * 109.47057 * 295.00045 * 6 5 4 9 9 N 4.90938 * 82.27778 * 119.13675 * 2 1 3 10 10 C 1.52997 * 109.46775 * 175.00231 * 6 5 4 11 11 C 1.50706 * 109.47038 * 184.99776 * 10 6 5 12 12 H 1.08002 * 119.99903 * 0.02562 * 11 10 6 13 13 C 1.37875 * 120.00168 * 180.02562 * 11 10 6 14 14 N 1.31509 * 119.99990 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00037 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46948 * 89.99901 * 15 13 11 17 17 H 1.48497 * 109.47129 * 210.00239 * 15 13 11 18 18 H 1.48507 * 109.47108 * 330.00244 * 15 13 11 19 19 C 1.50708 * 109.46548 * 240.00111 * 2 1 3 20 20 C 1.38254 * 119.99823 * 280.02144 * 19 2 1 21 21 C 1.38216 * 119.99725 * 179.97438 * 20 19 2 22 22 C 1.38256 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38208 * 119.99920 * 359.73680 * 22 21 20 24 24 S 1.76200 * 120.00281 * 180.27729 * 23 22 21 25 25 N 1.65595 * 107.22213 * 270.23935 * 24 23 22 26 26 O 1.42107 * 106.39717 * 23.78116 * 24 23 22 27 27 O 1.42097 * 106.40128 * 156.69772 * 24 23 22 28 28 C 1.38212 * 119.99857 * 100.00548 * 19 2 1 29 29 H 1.09000 * 109.47366 * 59.99798 * 1 2 3 30 30 H 1.08997 * 109.47852 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46920 * 299.99758 * 1 2 3 32 32 H 1.00906 * 111.00272 * 38.95279 * 4 2 1 33 33 H 1.08995 * 109.47499 * 299.99996 * 5 4 2 34 34 H 1.09002 * 109.46732 * 60.00859 * 5 4 2 35 35 H 1.09002 * 109.47285 * 304.99776 * 10 6 5 36 36 H 1.09002 * 109.47454 * 65.00211 * 10 6 5 37 37 H 0.97004 * 119.99906 * 179.97438 * 14 13 11 38 38 H 1.07997 * 120.00472 * 0.02562 * 20 19 2 39 39 H 1.08001 * 119.99666 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00076 * 180.02562 * 22 21 20 41 41 H 0.97003 * 119.99826 * 0.02562 * 25 24 23 42 42 H 0.96997 * 120.00242 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99812 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5963 -0.5331 3.5741 7 1 3.5520 -1.0013 3.3387 8 6 1.6228 -1.5694 3.9553 9 7 0.8703 -2.3687 4.2493 10 6 2.7802 0.4458 4.7355 11 6 3.4012 -0.2735 5.9052 12 1 3.6410 -1.3237 5.8278 13 6 3.6630 0.4091 7.0741 14 7 4.2053 -0.2185 8.0947 15 14 3.2476 2.2253 7.2083 16 1 1.8623 2.3796 7.7204 17 1 4.1967 2.8826 8.1423 18 1 3.3534 2.8576 5.8687 19 6 2.0322 -0.7104 -1.2306 20 6 2.0661 -2.0921 -1.2656 21 6 2.5262 -2.7437 -2.3944 22 6 2.9530 -2.0137 -3.4882 23 6 2.9145 -0.6326 -3.4550 24 16 3.4516 0.2977 -4.8517 25 7 5.0724 0.5779 -4.6604 26 8 3.3226 -0.5592 -5.9781 27 8 2.8121 1.5634 -4.7608 28 6 2.4586 0.0193 -2.3242 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.4495 -1.4980 1.4100 33 1 2.7590 1.0460 2.1182 34 1 1.0871 0.6162 2.5525 35 1 3.4320 1.2618 4.4232 36 1 1.8104 0.8475 5.0292 37 1 4.3899 0.2618 8.9170 38 1 1.7323 -2.6624 -0.4114 39 1 2.5523 -3.8230 -2.4219 40 1 3.3121 -2.5228 -4.3704 41 1 5.5339 0.2394 -3.8772 42 1 5.5604 1.0799 -5.3317 43 1 2.4314 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579278652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:40 Heat of formation + Delta-G solvation = -32.808341 kcal Electronic energy + Delta-G solvation = -25839.856134 eV Core-core repulsion = 22011.588021 eV Total energy + Delta-G solvation = -3828.268113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01343 -37.82527 -37.45559 -36.15238 -35.97405 -33.99877 -33.55847 -32.55313 -31.63592 -31.00881 -29.20541 -26.76694 -24.27932 -23.78121 -22.58828 -21.75333 -21.19369 -19.70271 -18.40795 -17.72079 -17.16418 -16.97784 -16.81593 -16.38586 -15.86884 -15.67721 -15.43636 -14.76613 -14.57957 -14.18428 -13.99218 -13.74221 -13.43931 -13.14480 -12.89033 -12.75153 -12.57925 -12.51383 -12.47304 -12.41106 -12.34532 -12.22444 -12.01986 -11.83267 -11.53937 -11.29202 -11.21108 -11.04402 -10.93155 -10.87280 -10.38774 -10.06073 -9.86612 -9.70533 -9.39553 -9.21312 -8.67049 -8.57884 -6.15734 -4.16877 0.03647 0.47464 0.93232 2.74721 3.06841 3.22585 3.29894 3.30970 3.39605 3.42865 3.47088 3.89035 4.21352 4.33323 4.42417 4.52252 4.60022 4.67069 4.75283 4.91216 4.95986 5.10368 5.18806 5.25792 5.29671 5.37701 5.47833 5.54786 5.59937 5.60243 5.68451 5.84474 5.91095 5.96000 6.00348 6.16687 6.26543 6.47085 6.61825 6.83572 6.87922 7.04739 7.16877 7.57635 8.24406 8.36308 8.87355 9.43851 10.97313 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002275 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.012734 B =12305.363828 C =12936.893819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 H 0.095 0.905 4 N -0.684 5.684 5 C 0.064 3.936 6 C 0.017 3.983 7 H 0.117 0.883 8 C 0.237 3.763 9 N -0.467 5.467 10 C -0.004 4.004 11 C -0.529 4.529 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.896 5.896 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.082 4.082 20 C -0.036 4.036 21 C -0.140 4.140 22 C -0.025 4.025 23 C -0.675 4.675 24 S 2.703 3.297 25 N -1.251 6.251 26 O -0.967 6.967 27 O -0.965 6.965 28 C -0.016 4.016 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.341 0.659 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.418 0.582 42 H 0.419 0.581 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 1.732 -26.716 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.008 3.992 3 H 0.114 0.886 4 N -0.315 5.315 5 C -0.066 4.066 6 C -0.005 4.005 7 H 0.135 0.865 8 C -0.080 4.080 9 N -0.144 5.144 10 C -0.043 4.043 11 C -0.567 4.567 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.083 4.083 20 C -0.055 4.055 21 C -0.159 4.159 22 C -0.044 4.044 23 C -0.763 4.763 24 S 2.792 3.208 25 N -0.925 5.925 26 O -0.956 6.956 27 O -0.954 6.954 28 C -0.036 4.036 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.245 0.755 42 H 0.250 0.750 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.440 0.883 -26.981 27.034 hybrid contribution -0.310 0.884 1.295 1.598 sum -1.750 1.767 -25.686 25.806 Atomic orbital electron populations 1.22520 0.95874 1.02701 1.02951 1.20489 0.92986 0.97786 0.87893 0.88646 1.60666 1.57124 1.09980 1.03706 1.22169 1.00569 0.95310 0.88512 1.19074 0.94485 0.91571 0.95334 0.86543 1.29201 0.93391 0.93486 0.91954 1.81084 1.11929 1.11654 1.09711 1.19634 0.97610 0.94468 0.92570 1.21015 1.41356 0.98134 0.96203 0.90805 1.24996 0.94341 0.98255 0.95537 1.69902 1.42888 1.36712 1.03913 0.86811 0.78502 0.85625 0.78545 1.20317 1.21220 1.18679 1.19945 0.99357 0.93970 0.95049 1.21355 0.92824 0.94184 0.97106 1.21320 1.00469 1.00574 0.93491 1.20927 0.93504 0.91677 0.98305 1.30385 1.20245 1.06939 1.18769 1.01441 0.72408 0.73722 0.73181 1.53044 1.30110 1.73672 1.35709 1.93601 1.85436 1.67963 1.48640 1.93606 1.74104 1.41472 1.86251 1.20797 0.91988 1.00268 0.90503 0.91581 0.92211 0.91636 0.84022 0.88805 0.94305 0.94240 0.96271 0.92516 0.85068 0.84898 0.84231 0.75454 0.75037 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.14 37.16 0.34 -1.22 16 2 C 0.12 1.07 2.79 -68.86 -0.19 0.88 16 3 H 0.10 0.79 7.66 -51.93 -0.40 0.39 16 4 N -0.68 -7.31 5.70 -107.95 -0.62 -7.93 16 5 C 0.06 0.78 4.92 -3.82 -0.02 0.76 16 6 C 0.02 0.28 2.42 -93.40 -0.23 0.06 16 7 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 8 C 0.24 4.42 12.98 -20.74 -0.27 4.15 16 9 N -0.47 -9.62 18.54 42.17 0.78 -8.84 16 10 C 0.00 -0.08 3.49 -27.88 -0.10 -0.17 16 11 C -0.53 -13.84 9.15 -34.44 -0.32 -14.16 16 12 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 15 Si 0.88 20.17 27.47 -169.99 -4.67 15.50 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 19 C -0.08 -0.74 4.96 -104.62 -0.52 -1.26 16 20 C -0.04 -0.32 9.32 -39.58 -0.37 -0.69 16 21 C -0.14 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.02 -0.20 9.52 -39.59 -0.38 -0.57 16 23 C -0.68 -5.54 5.94 -39.58 -0.24 -5.77 16 24 S 2.70 21.43 6.28 -107.50 -0.68 20.76 16 25 N -1.25 -5.47 9.55 60.35 0.58 -4.89 16 26 O -0.97 -10.50 17.29 -57.17 -0.99 -11.49 16 27 O -0.97 -10.72 17.28 -57.17 -0.99 -11.71 16 28 C -0.02 -0.14 9.15 -39.58 -0.36 -0.50 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 32 H 0.34 3.79 6.90 -39.29 -0.27 3.52 16 33 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.04 0.46 7.43 -51.93 -0.39 0.08 16 35 H 0.04 0.76 7.20 -51.93 -0.37 0.38 16 36 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.13 1.08 7.25 -52.49 -0.38 0.70 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.89 7.62 -52.49 -0.40 0.49 16 41 H 0.42 1.06 8.92 -34.47 -0.31 0.75 16 42 H 0.42 1.18 8.96 -34.47 -0.31 0.87 16 43 H 0.14 1.06 7.60 -52.49 -0.40 0.67 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -35.92 377.35 -8.94 -44.86 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.69 Total: 2.02 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -3.14 Total: -18.14 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 1.52 Total: -47.50 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.98 Total: -23.20 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Atomic # 16 Polarization: 21.43 SS G_CDS: -0.68 Total: 20.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.92 -8.94 -44.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.056 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds