Wall clock time and date at job start Tue Mar 31 2020 20:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47391 * 2 1 4 4 N 1.46897 * 109.46969 * 120.00324 * 2 1 3 5 5 C 1.46897 * 110.99963 * 274.99294 * 4 2 1 6 6 C 1.53005 * 109.46985 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.47098 * 55.00104 * 6 5 4 8 8 C 1.47203 * 109.47057 * 295.00045 * 6 5 4 9 9 N 4.90938 * 82.27778 * 119.13675 * 2 1 3 10 10 C 1.52997 * 109.46775 * 175.00231 * 6 5 4 11 11 C 1.50706 * 109.47038 * 184.99776 * 10 6 5 12 12 H 1.08002 * 119.99903 * 0.02562 * 11 10 6 13 13 C 1.37875 * 120.00168 * 180.02562 * 11 10 6 14 14 N 1.31509 * 119.99990 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00037 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46948 * 89.99901 * 15 13 11 17 17 H 1.48497 * 109.47129 * 210.00239 * 15 13 11 18 18 H 1.48507 * 109.47108 * 330.00244 * 15 13 11 19 19 C 1.50708 * 109.46548 * 240.00111 * 2 1 3 20 20 C 1.38254 * 119.99823 * 280.02144 * 19 2 1 21 21 C 1.38216 * 119.99725 * 179.97438 * 20 19 2 22 22 C 1.38256 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38208 * 119.99920 * 359.73680 * 22 21 20 24 24 S 1.76200 * 120.00281 * 180.27729 * 23 22 21 25 25 N 1.65595 * 107.22213 * 270.23935 * 24 23 22 26 26 O 1.42107 * 106.39717 * 23.78116 * 24 23 22 27 27 O 1.42097 * 106.40128 * 156.69772 * 24 23 22 28 28 C 1.38212 * 119.99857 * 100.00548 * 19 2 1 29 29 H 1.09000 * 109.47366 * 59.99798 * 1 2 3 30 30 H 1.08997 * 109.47852 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46920 * 299.99758 * 1 2 3 32 32 H 1.00906 * 111.00272 * 38.95279 * 4 2 1 33 33 H 1.08995 * 109.47499 * 299.99996 * 5 4 2 34 34 H 1.09002 * 109.46732 * 60.00859 * 5 4 2 35 35 H 1.09002 * 109.47285 * 304.99776 * 10 6 5 36 36 H 1.09002 * 109.47454 * 65.00211 * 10 6 5 37 37 H 0.97004 * 119.99906 * 179.97438 * 14 13 11 38 38 H 1.07997 * 120.00472 * 0.02562 * 20 19 2 39 39 H 1.08001 * 119.99666 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00076 * 180.02562 * 22 21 20 41 41 H 0.97003 * 119.99826 * 0.02562 * 25 24 23 42 42 H 0.96997 * 120.00242 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99812 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5963 -0.5331 3.5741 7 1 3.5520 -1.0013 3.3387 8 6 1.6228 -1.5694 3.9553 9 7 0.8703 -2.3687 4.2493 10 6 2.7802 0.4458 4.7355 11 6 3.4012 -0.2735 5.9052 12 1 3.6410 -1.3237 5.8278 13 6 3.6630 0.4091 7.0741 14 7 4.2053 -0.2185 8.0947 15 14 3.2476 2.2253 7.2083 16 1 1.8623 2.3796 7.7204 17 1 4.1967 2.8826 8.1423 18 1 3.3534 2.8576 5.8687 19 6 2.0322 -0.7104 -1.2306 20 6 2.0661 -2.0921 -1.2656 21 6 2.5262 -2.7437 -2.3944 22 6 2.9530 -2.0137 -3.4882 23 6 2.9145 -0.6326 -3.4550 24 16 3.4516 0.2977 -4.8517 25 7 5.0724 0.5779 -4.6604 26 8 3.3226 -0.5592 -5.9781 27 8 2.8121 1.5634 -4.7608 28 6 2.4586 0.0193 -2.3242 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.4495 -1.4980 1.4100 33 1 2.7590 1.0460 2.1182 34 1 1.0871 0.6162 2.5525 35 1 3.4320 1.2618 4.4232 36 1 1.8104 0.8475 5.0292 37 1 4.3899 0.2618 8.9170 38 1 1.7323 -2.6624 -0.4114 39 1 2.5523 -3.8230 -2.4219 40 1 3.3121 -2.5228 -4.3704 41 1 5.5339 0.2394 -3.8772 42 1 5.5604 1.0799 -5.3317 43 1 2.4314 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579278652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:39 Heat of formation + Delta-G solvation = -61.031939 kcal Electronic energy + Delta-G solvation = -25841.080001 eV Core-core repulsion = 22011.588021 eV Total energy + Delta-G solvation = -3829.491980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66749 -38.94232 -38.20204 -37.12695 -36.89069 -35.58066 -34.16045 -33.99619 -32.26360 -32.12252 -30.07519 -28.21190 -25.06393 -24.60628 -23.47162 -23.33744 -21.99822 -20.30962 -19.08549 -18.86951 -18.31423 -18.26288 -17.59419 -17.14500 -16.67997 -16.49608 -16.24517 -16.08160 -15.44738 -15.26664 -14.83755 -14.76549 -14.67189 -14.42820 -14.09954 -14.01580 -13.56014 -13.48056 -13.27619 -13.23212 -13.18892 -13.15473 -13.13805 -12.98932 -12.63132 -12.54332 -12.45639 -11.96079 -11.91037 -11.74169 -11.70812 -11.45826 -11.30758 -11.28644 -10.73118 -10.34245 -9.86070 -9.39268 -8.24062 -6.29640 -0.57815 -0.16727 0.30990 1.44361 1.45141 1.56277 1.94458 1.95142 2.19082 2.41612 2.43999 2.79760 3.09900 3.12412 3.23986 3.51369 3.79539 3.91241 4.02404 4.10936 4.21215 4.28307 4.31566 4.40097 4.51599 4.57958 4.65234 4.78699 4.85173 4.94380 4.97062 4.99305 5.08209 5.21103 5.27641 5.31064 5.33765 5.42317 5.49170 5.64967 5.86001 6.03920 6.26346 6.29662 6.36670 6.75085 6.81339 7.34957 8.92858 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002275 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.012734 B =12305.363828 C =12936.893819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.121 3.879 3 H 0.109 0.891 4 N -0.686 5.686 5 C 0.074 3.926 6 C 0.024 3.976 7 H 0.120 0.880 8 C 0.248 3.752 9 N -0.507 5.507 10 C -0.003 4.003 11 C -0.530 4.530 12 H 0.028 0.972 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.220 1.220 19 C -0.090 4.090 20 C -0.048 4.048 21 C -0.143 4.143 22 C -0.031 4.031 23 C -0.674 4.674 24 S 2.727 3.273 25 N -1.236 6.236 26 O -0.998 6.998 27 O -0.997 6.997 28 C -0.024 4.024 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.337 0.663 33 H 0.117 0.883 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.429 0.571 42 H 0.429 0.571 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 3.781 -28.651 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 H 0.127 0.873 4 N -0.316 5.316 5 C -0.055 4.055 6 C 0.002 3.998 7 H 0.137 0.863 8 C -0.068 4.068 9 N -0.184 5.184 10 C -0.042 4.042 11 C -0.568 4.568 12 H 0.046 0.954 13 C -0.195 4.195 14 N -0.596 5.596 15 Si 0.770 3.230 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.142 1.142 19 C -0.091 4.091 20 C -0.066 4.066 21 C -0.162 4.162 22 C -0.050 4.050 23 C -0.763 4.763 24 S 2.817 3.183 25 N -0.916 5.916 26 O -0.987 6.987 27 O -0.987 6.987 28 C -0.044 4.044 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.171 0.829 41 H 0.259 0.741 42 H 0.261 0.739 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.410 2.936 -28.965 29.147 hybrid contribution -0.266 0.102 1.883 1.904 sum -1.675 3.038 -27.082 27.303 Atomic orbital electron populations 1.22490 0.95637 1.02477 1.03191 1.20523 0.93142 0.98216 0.86960 0.87310 1.60630 1.57461 1.09787 1.03750 1.22071 1.01328 0.95180 0.86963 1.19117 0.94303 0.90445 0.95899 0.86262 1.29774 0.92943 0.93228 0.90892 1.81084 1.13512 1.12881 1.10926 1.19594 0.97639 0.95369 0.91599 1.21420 1.40448 0.96595 0.98338 0.95353 1.26055 0.94421 1.03913 0.95139 1.70091 1.45523 1.39108 1.04896 0.85708 0.77667 0.79143 0.80435 1.20381 1.21777 1.14211 1.19989 0.99793 0.94131 0.95226 1.21496 0.93203 0.94372 0.97573 1.21572 0.99858 1.01654 0.93104 1.21176 0.93289 0.91716 0.98840 1.30333 1.20421 1.07113 1.18463 1.00483 0.72766 0.72640 0.72397 1.52684 1.28767 1.73624 1.36508 1.93565 1.86252 1.68583 1.50311 1.93568 1.75470 1.42965 1.86654 1.20959 0.92013 1.00893 0.90507 0.90871 0.92725 0.91806 0.84469 0.86456 0.93576 0.91540 0.95646 0.92721 0.84995 0.83096 0.82919 0.74097 0.73858 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.14 71.98 0.66 -2.05 16 2 C 0.12 1.88 2.79 44.17 0.12 2.00 16 3 H 0.11 1.41 7.66 -2.39 -0.02 1.39 16 4 N -0.69 -13.00 5.70 -495.45 -2.82 -15.82 16 5 C 0.07 1.55 4.92 86.31 0.42 1.98 16 6 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 7 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 8 C 0.25 9.12 12.98 89.44 1.16 10.28 16 9 N -0.51 -20.96 18.54 20.01 0.37 -20.59 16 10 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 11 C -0.53 -27.81 9.15 25.60 0.23 -27.57 16 12 H 0.03 1.69 7.84 -2.91 -0.02 1.67 16 13 C 0.00 0.07 5.47 84.65 0.46 0.53 16 14 N -0.96 -58.47 13.96 21.45 0.30 -58.17 16 15 Si 0.95 40.45 27.47 68.60 1.88 42.33 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.22 -7.84 6.54 99.48 0.65 -7.19 16 19 C -0.09 -1.45 4.96 -19.86 -0.10 -1.55 16 20 C -0.05 -0.77 9.32 22.27 0.21 -0.56 16 21 C -0.14 -2.01 10.05 22.27 0.22 -1.79 16 22 C -0.03 -0.44 9.52 22.27 0.21 -0.22 16 23 C -0.67 -9.95 5.94 22.27 0.13 -9.82 16 24 S 2.73 39.66 6.28 -56.49 -0.35 39.31 16 25 N -1.24 -8.41 9.55 37.02 0.35 -8.06 16 26 O -1.00 -20.68 17.29 -128.00 -2.21 -22.89 16 27 O -1.00 -21.03 17.28 -128.00 -2.21 -23.25 16 28 C -0.02 -0.37 9.15 22.27 0.20 -0.17 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 31 H 0.06 0.99 7.45 -2.38 -0.02 0.97 16 32 H 0.34 6.95 6.90 -89.69 -0.62 6.33 16 33 H 0.12 1.97 8.05 -2.39 -0.02 1.95 16 34 H 0.05 0.93 7.43 -2.39 -0.02 0.91 16 35 H 0.07 2.24 7.20 -2.39 -0.02 2.22 16 36 H 0.03 0.95 7.57 -2.39 -0.02 0.94 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.13 2.03 7.25 -2.91 -0.02 2.01 16 39 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.15 1.69 7.62 -2.91 -0.02 1.66 16 41 H 0.43 1.19 8.92 -96.75 -0.86 0.33 16 42 H 0.43 1.57 8.96 -96.75 -0.87 0.71 16 43 H 0.15 1.95 7.60 -2.91 -0.02 1.93 16 Total: -1.00 -79.31 377.35 -2.01 -81.32 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -1.33 Total: 14.07 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.02 Total: -28.24 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -1.80 Total: -102.65 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -4.43 Total: -46.14 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Atomic # 16 Polarization: 39.66 SS G_CDS: -0.35 Total: 39.31 kcal Total: -79.31 -2.01 -81.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.285 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds