Wall clock time and date at job start Tue Mar 31 2020 20:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 8 8 C 1.47198 * 109.46966 * 65.00286 * 6 5 4 9 9 N 4.90944 * 82.27775 * 240.86650 * 2 1 3 10 10 C 1.53008 * 109.46744 * 185.00131 * 6 5 4 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 6 5 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 6 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 6 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47086 * 89.99690 * 15 13 11 17 17 H 1.48495 * 109.47382 * 210.00139 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00007 * 15 13 11 19 19 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 20 20 C 1.38257 * 119.99965 * 79.72689 * 19 2 1 21 21 C 1.38210 * 119.99954 * 179.76915 * 20 19 2 22 22 C 1.38251 * 119.99955 * 0.48043 * 21 20 19 23 23 C 1.38214 * 120.00151 * 359.79800 * 22 21 20 24 24 S 1.76200 * 120.00143 * 179.97438 * 23 22 21 25 25 N 1.65601 * 107.21680 * 269.97374 * 24 23 22 26 26 O 1.42096 * 106.40351 * 23.51558 * 24 23 22 27 27 O 1.42104 * 106.40168 * 156.43675 * 24 23 22 28 28 C 1.38208 * 119.99789 * 260.00392 * 19 2 1 29 29 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 30 30 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 32 32 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 33 33 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 34 34 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 35 35 H 1.09005 * 109.46614 * 294.99810 * 10 6 5 36 36 H 1.08993 * 109.46898 * 55.00161 * 10 6 5 37 37 H 0.97000 * 119.99810 * 180.02562 * 14 13 11 38 38 H 1.07998 * 119.99901 * 0.02562 * 20 19 2 39 39 H 1.07997 * 120.00012 * 180.25797 * 21 20 19 40 40 H 1.08001 * 120.00182 * 179.77018 * 22 21 20 41 41 H 0.96994 * 119.99725 * 359.97438 * 25 24 23 42 42 H 0.97004 * 119.99571 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.00382 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 1 3.5520 -1.0009 -3.3389 8 6 1.6228 -1.5691 -3.9555 9 7 0.8703 -2.3685 -4.2494 10 6 2.7800 0.4463 -4.7356 11 6 3.4010 -0.2729 -5.9053 12 1 3.6409 -1.3231 -5.8279 13 6 3.6628 0.4098 -7.0742 14 7 3.3710 1.6887 -7.1682 15 14 4.4332 -0.4814 -8.5239 16 1 3.3621 -1.0447 -9.3846 17 1 5.2520 0.4731 -9.3134 18 1 5.2978 -1.5814 -8.0260 19 6 2.0324 -0.7105 1.2304 20 6 2.0615 -2.0922 1.2674 21 6 2.5268 -2.7437 2.3940 22 6 2.9537 -2.0138 3.4878 23 6 2.9192 -0.6326 3.4531 24 16 3.4627 0.2976 4.8473 25 7 2.1451 0.5351 5.8219 26 8 4.3501 -0.5443 5.5703 27 8 3.8338 1.5781 4.3554 28 6 2.4586 0.0193 2.3240 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.4496 -1.4979 -1.4101 33 1 1.0870 0.6163 -2.5525 34 1 2.7588 1.0464 -2.1182 35 1 1.8101 0.8478 -5.0293 36 1 3.4316 1.2622 -4.4232 37 1 3.5549 2.1689 -7.9907 38 1 1.7246 -2.6624 0.4143 39 1 2.5535 -3.8230 2.4213 40 1 3.3138 -2.5230 4.3696 41 1 1.2808 0.1780 5.5645 42 1 2.2375 1.0320 6.6499 43 1 2.4321 1.0986 2.2967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579278653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:42 Heat of formation + Delta-G solvation = -36.570858 kcal Electronic energy + Delta-G solvation = -25771.846021 eV Core-core repulsion = 21943.414753 eV Total energy + Delta-G solvation = -3828.431268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97348 -37.71961 -37.42376 -36.11597 -35.90330 -33.92454 -33.57852 -32.54827 -31.60566 -30.79579 -29.04579 -26.36149 -24.24247 -23.74116 -22.54486 -21.95393 -21.24030 -19.69367 -18.38572 -17.69625 -17.11485 -16.75862 -16.63261 -16.26886 -15.83825 -15.54061 -15.39981 -14.76397 -14.53946 -14.27550 -13.97271 -13.71525 -13.27152 -12.96670 -12.89559 -12.70685 -12.57971 -12.44477 -12.38289 -12.32782 -12.18746 -12.13908 -11.85424 -11.75101 -11.34068 -11.15491 -11.07534 -10.99161 -10.88987 -10.78571 -10.56117 -10.31934 -9.70166 -9.59918 -9.29086 -9.15982 -8.50243 -8.47003 -6.12649 -4.15977 0.05414 0.50228 0.96322 2.76192 3.10680 3.27811 3.34561 3.37742 3.41986 3.48239 3.53799 3.95645 4.25803 4.39584 4.46047 4.56406 4.69743 4.72317 4.79557 4.95525 5.00446 5.13508 5.25502 5.28547 5.41750 5.46618 5.53531 5.57228 5.59299 5.67369 5.71067 5.88060 5.99365 6.07409 6.09725 6.31439 6.48253 6.50379 6.59276 6.94462 7.25721 7.39576 7.47991 7.82081 8.19256 8.31849 8.88431 9.49743 10.98197 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.002134 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.000544 B =13115.915308 C =13515.979696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.118 3.882 3 H 0.096 0.904 4 N -0.685 5.685 5 C 0.067 3.933 6 C 0.006 3.994 7 H 0.112 0.888 8 C 0.241 3.759 9 N -0.477 5.477 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.081 4.081 20 C -0.037 4.037 21 C -0.140 4.140 22 C -0.025 4.025 23 C -0.675 4.675 24 S 2.702 3.298 25 N -1.252 6.252 26 O -0.966 6.966 27 O -0.962 6.962 28 C -0.016 4.016 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.339 0.661 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.416 0.584 42 H 0.419 0.581 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 -2.442 27.286 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.008 3.992 3 H 0.114 0.886 4 N -0.315 5.315 5 C -0.063 4.063 6 C -0.016 4.016 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.154 5.154 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.082 4.082 20 C -0.055 4.055 21 C -0.159 4.159 22 C -0.045 4.045 23 C -0.763 4.763 24 S 2.791 3.209 25 N -0.926 5.926 26 O -0.955 6.955 27 O -0.951 6.951 28 C -0.035 4.035 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.243 0.757 42 H 0.249 0.751 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.995 -3.130 26.916 27.554 hybrid contribution -1.046 -0.441 -1.376 1.784 sum -6.041 -3.572 25.540 26.487 Atomic orbital electron populations 1.22513 0.95941 1.02560 1.02885 1.20501 0.92866 0.97926 0.87956 0.88569 1.60679 1.57000 1.10026 1.03838 1.22148 1.00597 0.95240 0.88285 1.19345 0.93933 0.91974 0.96309 0.87069 1.29361 0.93311 0.93279 0.91633 1.81064 1.11937 1.12075 1.10280 1.19163 0.98289 0.93172 0.89964 1.21129 1.41398 0.96183 0.97821 0.92526 1.24955 0.95504 0.94828 0.98692 1.69936 1.47644 1.08067 1.27323 0.86585 0.79361 0.79575 0.82516 1.20699 1.21049 1.19721 1.19966 0.99264 0.93957 0.95046 1.21352 0.92985 0.94213 0.96973 1.21308 1.00446 1.00530 0.93607 1.20920 0.92903 0.91679 0.98985 1.30388 1.20629 1.06935 1.18354 1.01503 0.72429 0.73786 0.73150 1.53084 1.27210 1.73598 1.38692 1.93600 1.61781 1.68675 1.71452 1.93618 1.80827 1.40298 1.80404 1.20805 0.91511 1.00283 0.90950 0.91578 0.92301 0.91751 0.84230 0.94333 0.88753 0.95751 0.94136 0.92760 0.85109 0.84951 0.84260 0.75689 0.75062 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.14 37.16 0.34 -1.20 16 2 C 0.12 1.14 2.79 -68.86 -0.19 0.95 16 3 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 4 N -0.68 -8.01 5.71 -107.94 -0.62 -8.63 16 5 C 0.07 0.91 4.92 -3.82 -0.02 0.89 16 6 C 0.01 0.11 2.42 -93.40 -0.23 -0.11 16 7 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 8 C 0.24 4.62 12.98 -20.74 -0.27 4.36 16 9 N -0.48 -9.89 18.54 42.18 0.78 -9.11 16 10 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 11 C -0.53 -13.84 8.60 -34.44 -0.30 -14.13 16 12 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 15 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.08 -0.77 4.95 -104.62 -0.52 -1.29 16 20 C -0.04 -0.33 9.32 -39.58 -0.37 -0.70 16 21 C -0.14 -1.14 10.05 -39.59 -0.40 -1.53 16 22 C -0.03 -0.21 9.52 -39.59 -0.38 -0.58 16 23 C -0.67 -5.73 5.94 -39.58 -0.24 -5.97 16 24 S 2.70 22.07 6.28 -107.50 -0.68 21.40 16 25 N -1.25 -4.96 9.55 60.35 0.58 -4.39 16 26 O -0.97 -10.85 17.28 -57.17 -0.99 -11.84 16 27 O -0.96 -11.20 17.28 -57.17 -0.99 -12.18 16 28 C -0.02 -0.14 9.15 -39.58 -0.36 -0.50 16 29 H 0.07 0.61 7.45 -51.93 -0.39 0.22 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.34 4.01 6.90 -39.29 -0.27 3.74 16 33 H 0.04 0.52 7.43 -51.93 -0.39 0.13 16 34 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.13 1.12 7.26 -52.49 -0.38 0.74 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.92 7.62 -52.49 -0.40 0.52 16 41 H 0.42 0.71 8.92 -34.47 -0.31 0.41 16 42 H 0.42 1.02 8.96 -34.47 -0.31 0.71 16 43 H 0.14 1.13 7.60 -52.49 -0.40 0.73 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -35.28 380.96 -9.32 -44.60 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.73 Total: 0.41 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.14 Total: -17.61 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 1.48 Total: -46.68 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.98 Total: -24.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 22.07 SS G_CDS: -0.68 Total: 21.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.28 -9.32 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.031 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds