Wall clock time and date at job start Tue Mar 31 2020 20:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 8 8 C 1.47198 * 109.46966 * 65.00286 * 6 5 4 9 9 N 4.90944 * 82.27775 * 240.86650 * 2 1 3 10 10 C 1.53008 * 109.46744 * 185.00131 * 6 5 4 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 6 5 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 6 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 6 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47086 * 89.99690 * 15 13 11 17 17 H 1.48495 * 109.47382 * 210.00139 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00007 * 15 13 11 19 19 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 20 20 C 1.38257 * 119.99965 * 79.72689 * 19 2 1 21 21 C 1.38210 * 119.99954 * 179.76915 * 20 19 2 22 22 C 1.38251 * 119.99955 * 0.48043 * 21 20 19 23 23 C 1.38214 * 120.00151 * 359.79800 * 22 21 20 24 24 S 1.76200 * 120.00143 * 179.97438 * 23 22 21 25 25 N 1.65601 * 107.21680 * 269.97374 * 24 23 22 26 26 O 1.42096 * 106.40351 * 23.51558 * 24 23 22 27 27 O 1.42104 * 106.40168 * 156.43675 * 24 23 22 28 28 C 1.38208 * 119.99789 * 260.00392 * 19 2 1 29 29 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 30 30 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 32 32 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 33 33 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 34 34 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 35 35 H 1.09005 * 109.46614 * 294.99810 * 10 6 5 36 36 H 1.08993 * 109.46898 * 55.00161 * 10 6 5 37 37 H 0.97000 * 119.99810 * 180.02562 * 14 13 11 38 38 H 1.07998 * 119.99901 * 0.02562 * 20 19 2 39 39 H 1.07997 * 120.00012 * 180.25797 * 21 20 19 40 40 H 1.08001 * 120.00182 * 179.77018 * 22 21 20 41 41 H 0.96994 * 119.99725 * 359.97438 * 25 24 23 42 42 H 0.97004 * 119.99571 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.00382 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 1 3.5520 -1.0009 -3.3389 8 6 1.6228 -1.5691 -3.9555 9 7 0.8703 -2.3685 -4.2494 10 6 2.7800 0.4463 -4.7356 11 6 3.4010 -0.2729 -5.9053 12 1 3.6409 -1.3231 -5.8279 13 6 3.6628 0.4098 -7.0742 14 7 3.3710 1.6887 -7.1682 15 14 4.4332 -0.4814 -8.5239 16 1 3.3621 -1.0447 -9.3846 17 1 5.2520 0.4731 -9.3134 18 1 5.2978 -1.5814 -8.0260 19 6 2.0324 -0.7105 1.2304 20 6 2.0615 -2.0922 1.2674 21 6 2.5268 -2.7437 2.3940 22 6 2.9537 -2.0138 3.4878 23 6 2.9192 -0.6326 3.4531 24 16 3.4627 0.2976 4.8473 25 7 2.1451 0.5351 5.8219 26 8 4.3501 -0.5443 5.5703 27 8 3.8338 1.5781 4.3554 28 6 2.4586 0.0193 2.3240 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.4496 -1.4979 -1.4101 33 1 1.0870 0.6163 -2.5525 34 1 2.7588 1.0464 -2.1182 35 1 1.8101 0.8478 -5.0293 36 1 3.4316 1.2622 -4.4232 37 1 3.5549 2.1689 -7.9907 38 1 1.7246 -2.6624 0.4143 39 1 2.5535 -3.8230 2.4213 40 1 3.3138 -2.5230 4.3696 41 1 1.2808 0.1780 5.5645 42 1 2.2375 1.0320 6.6499 43 1 2.4321 1.0986 2.2967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579278653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:42 Heat of formation + Delta-G solvation = -63.002852 kcal Electronic energy + Delta-G solvation = -25772.992198 eV Core-core repulsion = 21943.414753 eV Total energy + Delta-G solvation = -3829.577445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67075 -38.92054 -38.20443 -37.12277 -36.88884 -35.60874 -34.10852 -34.00475 -32.25489 -31.95293 -29.95296 -27.95038 -25.13106 -24.64379 -23.71596 -23.43356 -22.01781 -20.32113 -19.03918 -18.55732 -18.29495 -18.22437 -17.59330 -17.11368 -16.66131 -16.60564 -16.33471 -16.12754 -15.43732 -15.24041 -14.81732 -14.72520 -14.57421 -14.32220 -14.14879 -13.88337 -13.48976 -13.42681 -13.27006 -13.22464 -13.16441 -13.15134 -13.05687 -12.98831 -12.69347 -12.54494 -12.46518 -12.32886 -11.99898 -11.87685 -11.68220 -11.39023 -11.31436 -11.14602 -10.56029 -10.34039 -9.86278 -9.40925 -8.20236 -6.28216 -0.58334 -0.16934 0.30755 1.39334 1.41434 1.50597 1.93518 1.95422 2.18693 2.40611 2.45294 2.79431 3.11078 3.15101 3.24452 3.51092 3.79165 3.91690 4.02847 4.11634 4.23228 4.27858 4.31590 4.39632 4.52157 4.62357 4.69148 4.80738 4.87320 4.95923 4.99968 5.00374 5.08643 5.21965 5.30828 5.33962 5.43717 5.47401 5.62829 5.79013 5.86124 6.00101 6.20460 6.30984 6.37470 6.74744 6.87044 7.40372 8.90596 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.002134 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.000544 B =13115.915308 C =13515.979696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.118 3.882 3 H 0.100 0.900 4 N -0.686 5.686 5 C 0.078 3.922 6 C 0.019 3.981 7 H 0.121 0.879 8 C 0.251 3.749 9 N -0.502 5.502 10 C 0.038 3.962 11 C -0.539 4.539 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.947 3.053 16 H -0.283 1.283 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.090 4.090 20 C -0.047 4.047 21 C -0.142 4.142 22 C -0.031 4.031 23 C -0.674 4.674 24 S 2.726 3.274 25 N -1.234 6.234 26 O -0.998 6.998 27 O -0.999 6.999 28 C -0.025 4.025 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.339 0.661 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.002 0.998 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.429 0.571 42 H 0.429 0.571 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -3.184 28.568 29.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.009 3.991 3 H 0.118 0.882 4 N -0.316 5.316 5 C -0.052 4.052 6 C -0.003 4.003 7 H 0.138 0.862 8 C -0.065 4.065 9 N -0.180 5.180 10 C -0.001 4.001 11 C -0.577 4.577 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.773 3.227 16 H -0.209 1.209 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.091 4.091 20 C -0.066 4.066 21 C -0.160 4.160 22 C -0.050 4.050 23 C -0.763 4.763 24 S 2.816 3.184 25 N -0.914 5.914 26 O -0.987 6.987 27 O -0.988 6.988 28 C -0.045 4.045 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.020 0.980 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.259 0.741 42 H 0.262 0.738 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.175 -3.877 28.224 28.955 hybrid contribution -1.031 -0.236 -1.718 2.017 sum -6.205 -4.113 26.506 27.531 Atomic orbital electron populations 1.22460 0.95028 1.02689 1.03255 1.20537 0.93606 0.97932 0.87046 0.88158 1.60624 1.57540 1.09791 1.03681 1.21966 1.00751 0.95092 0.87367 1.19214 0.94289 0.90707 0.96088 0.86166 1.29643 0.92937 0.92997 0.90895 1.81066 1.12919 1.13014 1.10998 1.18983 0.96493 0.93799 0.90789 1.21558 1.40824 0.96245 0.99051 0.92821 1.25709 0.96283 0.95538 1.01290 1.70028 1.48981 1.09260 1.28022 0.85710 0.78571 0.78752 0.79650 1.20933 1.20441 1.18940 1.19964 0.99901 0.94250 0.95009 1.21496 0.93316 0.94205 0.97544 1.21576 0.99655 1.01707 0.93078 1.21190 0.92534 0.91629 0.99635 1.30328 1.20589 1.07186 1.18160 1.00519 0.72500 0.72624 0.72779 1.52653 1.26740 1.73558 1.38440 1.93563 1.63707 1.69254 1.72155 1.93576 1.82057 1.42041 1.81138 1.20940 0.91702 1.00797 0.91067 0.92373 0.92300 0.90181 0.84290 0.94153 0.87722 0.97973 0.94634 0.92723 0.84851 0.82879 0.82804 0.74060 0.73817 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.14 71.98 0.66 -2.06 16 2 C 0.12 2.11 2.79 44.17 0.12 2.23 16 3 H 0.10 1.70 7.66 -2.39 -0.02 1.69 16 4 N -0.69 -15.06 5.71 -495.43 -2.83 -17.89 16 5 C 0.08 2.02 4.92 86.31 0.42 2.45 16 6 C 0.02 0.64 2.42 -12.59 -0.03 0.61 16 7 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 8 C 0.25 9.49 12.98 89.44 1.16 10.65 16 9 N -0.50 -20.58 18.54 20.01 0.37 -20.21 16 10 C 0.04 1.72 4.42 29.85 0.13 1.85 16 11 C -0.54 -28.21 8.60 25.60 0.22 -27.99 16 12 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 13 C 0.01 0.59 5.46 84.65 0.46 1.05 16 14 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 15 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 C -0.09 -1.57 4.95 -19.87 -0.10 -1.67 16 20 C -0.05 -0.78 9.32 22.27 0.21 -0.57 16 21 C -0.14 -2.01 10.05 22.27 0.22 -1.79 16 22 C -0.03 -0.44 9.52 22.27 0.21 -0.23 16 23 C -0.67 -10.48 5.94 22.27 0.13 -10.34 16 24 S 2.73 41.72 6.28 -56.49 -0.35 41.37 16 25 N -1.23 -7.60 9.55 37.02 0.35 -7.25 16 26 O -1.00 -21.56 17.28 -128.00 -2.21 -23.77 16 27 O -1.00 -22.68 17.28 -128.00 -2.21 -24.89 16 28 C -0.03 -0.42 9.15 22.27 0.20 -0.22 16 29 H 0.06 1.00 7.45 -2.39 -0.02 0.98 16 30 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.34 7.56 6.90 -89.70 -0.62 6.94 16 33 H 0.04 1.04 7.43 -2.39 -0.02 1.02 16 34 H 0.10 2.53 8.06 -2.38 -0.02 2.51 16 35 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.13 2.08 7.26 -2.91 -0.02 2.06 16 39 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.15 1.72 7.62 -2.91 -0.02 1.70 16 41 H 0.43 0.53 8.92 -96.75 -0.86 -0.33 16 42 H 0.43 1.31 8.96 -96.74 -0.87 0.44 16 43 H 0.15 2.19 7.60 -2.91 -0.02 2.17 16 Total: -1.00 -74.52 380.96 -1.82 -76.33 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -1.28 Total: 9.47 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 4.03 Total: -26.03 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -1.82 Total: -97.77 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -4.42 Total: -48.66 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 41.72 SS G_CDS: -0.35 Total: 41.37 kcal Total: -74.52 -1.82 -76.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.332 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds