Wall clock time and date at job start Tue Mar 31 2020 20:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 5 5 C 1.46897 * 111.00355 * 84.99974 * 4 2 1 6 6 C 1.52994 * 109.47637 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46747 * 54.99939 * 6 5 4 8 8 C 1.47206 * 109.46857 * 295.00236 * 6 5 4 9 9 N 4.90940 * 135.91566 * 247.76859 * 2 1 3 10 10 C 1.52996 * 109.47301 * 175.00191 * 6 5 4 11 11 C 1.50703 * 109.46950 * 184.99848 * 10 6 5 12 12 H 1.08002 * 119.99972 * 0.02562 * 11 10 6 13 13 C 1.37881 * 120.00014 * 179.97438 * 11 10 6 14 14 N 1.31519 * 119.99623 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00225 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47057 * 60.00205 * 15 13 11 17 17 H 1.48495 * 109.47248 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47094 * 300.00443 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38259 * 119.99761 * 79.72545 * 19 2 1 21 21 C 1.38218 * 119.99583 * 179.76641 * 20 19 2 22 22 C 1.38254 * 120.00216 * 0.48921 * 21 20 19 23 23 C 1.38218 * 119.99541 * 359.78619 * 22 21 20 24 24 S 1.76207 * 119.99696 * 179.97438 * 23 22 21 25 25 N 1.65598 * 107.21811 * 269.98013 * 24 23 22 26 26 O 1.42101 * 106.39957 * 23.51984 * 24 23 22 27 27 O 1.42102 * 106.40056 * 156.43875 * 24 23 22 28 28 C 1.38210 * 120.00157 * 260.00058 * 19 2 1 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.00901 * 110.99869 * 321.04664 * 4 2 1 33 33 H 1.09006 * 109.46948 * 300.00869 * 5 4 2 34 34 H 1.09006 * 109.47033 * 59.99701 * 5 4 2 35 35 H 1.09001 * 109.47026 * 305.00091 * 10 6 5 36 36 H 1.08998 * 109.47338 * 64.99846 * 10 6 5 37 37 H 0.96996 * 119.99569 * 179.97438 * 14 13 11 38 38 H 1.07999 * 120.00184 * 0.02562 * 20 19 2 39 39 H 1.08005 * 119.99577 * 180.25567 * 21 20 19 40 40 H 1.07996 * 120.00368 * 179.77392 * 22 21 20 41 41 H 0.97005 * 119.99628 * 150.00060 * 25 24 23 42 42 H 0.96998 * 120.00332 * 329.99870 * 25 24 23 43 43 H 1.08001 * 119.99803 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5952 -0.5332 -3.5744 7 1 1.9692 -1.4081 -3.7500 8 6 3.9840 -0.9622 -3.3419 9 7 5.0565 -1.2923 -3.1617 10 6 2.5430 0.3850 -4.7972 11 6 2.9309 -0.3943 -6.0274 12 1 3.1884 -1.4399 -5.9453 13 6 2.9559 0.2274 -7.2578 14 7 2.6418 1.5006 -7.3577 15 14 3.4360 -0.7385 -8.7828 16 1 2.4909 -1.8684 -8.9710 17 1 3.3854 0.1526 -9.9695 18 1 4.8140 -1.2678 -8.6201 19 6 2.0323 -0.7104 1.2305 20 6 2.0614 -2.0922 1.2675 21 6 2.5266 -2.7437 2.3942 22 6 2.9534 -2.0137 3.4881 23 6 2.9190 -0.6324 3.4531 24 16 3.4623 0.2979 4.8475 25 7 2.1446 0.5354 5.8219 26 8 4.3496 -0.5442 5.5706 27 8 3.8336 1.5783 4.3555 28 6 2.4586 0.0193 2.3241 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.4496 -1.4979 -1.4100 33 1 1.0872 0.6163 -2.5525 34 1 2.7590 1.0462 -2.1182 35 1 1.5316 0.7734 -4.9169 36 1 3.2366 1.2143 -4.6587 37 1 2.6597 1.9381 -8.2232 38 1 1.7245 -2.6624 0.4144 39 1 2.5531 -3.8230 2.4216 40 1 3.3135 -2.5228 4.3698 41 1 2.2597 0.6181 6.7816 42 1 1.2577 0.5919 5.4332 43 1 2.4314 1.0986 2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579278654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:45 Heat of formation + Delta-G solvation = -36.921697 kcal Electronic energy + Delta-G solvation = -25806.612240 eV Core-core repulsion = 21978.165759 eV Total energy + Delta-G solvation = -3828.446481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94266 -37.62268 -37.44213 -36.12120 -35.83549 -33.82387 -33.58936 -32.54012 -31.57797 -30.76409 -29.03494 -26.35674 -24.23398 -23.70784 -22.51999 -21.85220 -21.27546 -19.70449 -18.35639 -17.70935 -17.23994 -16.91914 -16.50459 -16.25005 -15.89326 -15.30741 -15.20513 -14.68705 -14.50670 -14.32940 -14.09830 -13.58433 -13.44547 -13.01575 -12.72945 -12.59743 -12.52222 -12.46077 -12.36645 -12.30683 -12.21445 -11.99418 -11.83416 -11.66719 -11.31029 -11.15693 -11.11490 -11.06292 -10.79691 -10.70437 -10.56755 -10.28416 -9.66894 -9.58346 -9.29875 -9.12780 -8.49870 -8.43891 -6.12593 -4.15992 0.06821 0.53393 0.98907 2.78610 3.14485 3.28788 3.33536 3.37089 3.44618 3.70596 3.80480 3.96776 4.24867 4.39467 4.47017 4.56345 4.71835 4.79849 4.86134 4.98034 5.00051 5.13956 5.25538 5.29780 5.46187 5.48704 5.53784 5.56495 5.61653 5.71515 5.73664 5.83945 5.96724 6.02380 6.13031 6.32851 6.44485 6.53208 6.61006 6.95405 7.31872 7.37997 7.49029 7.82220 8.19437 8.56124 8.88439 9.49623 10.98230 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.002104 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.717986 B =13306.528110 C =13377.245314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 H 0.093 0.907 4 N -0.687 5.687 5 C 0.066 3.934 6 C 0.011 3.989 7 H 0.099 0.901 8 C 0.252 3.748 9 N -0.476 5.476 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.081 4.081 20 C -0.037 4.037 21 C -0.141 4.141 22 C -0.024 4.024 23 C -0.676 4.676 24 S 2.702 3.298 25 N -1.249 6.249 26 O -0.965 6.965 27 O -0.960 6.960 28 C -0.020 4.020 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.342 0.658 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -3.669 26.100 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.008 3.992 3 H 0.111 0.889 4 N -0.317 5.317 5 C -0.064 4.064 6 C -0.011 4.011 7 H 0.116 0.884 8 C -0.065 4.065 9 N -0.153 5.153 10 C -0.007 4.007 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.083 4.083 20 C -0.055 4.055 21 C -0.160 4.160 22 C -0.043 4.043 23 C -0.764 4.764 24 S 2.791 3.209 25 N -0.923 5.923 26 O -0.955 6.955 27 O -0.949 6.949 28 C -0.040 4.040 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.986 -3.657 26.436 27.587 hybrid contribution -1.866 -0.658 -1.539 2.506 sum -8.851 -4.315 24.898 26.774 Atomic orbital electron populations 1.22505 0.95750 1.02584 1.02904 1.20482 0.92924 0.97805 0.87941 0.88881 1.60607 1.57226 1.10082 1.03814 1.22134 1.00582 0.95184 0.88461 1.19203 0.84488 1.00747 0.96711 0.88351 1.28876 0.94772 0.92162 0.90650 1.81023 1.12744 1.10275 1.11278 1.19161 0.98797 0.93893 0.88806 1.21093 1.46899 0.96639 0.91941 0.92571 1.24955 0.94986 0.94886 0.99139 1.69926 1.48142 1.09898 1.25023 0.86645 0.79296 0.79851 0.82227 1.20072 1.21180 1.20212 1.19978 0.99258 0.94000 0.95032 1.21334 0.93124 0.94172 0.96916 1.21314 1.00475 1.00498 0.93671 1.20888 0.92858 0.91680 0.98921 1.30502 1.20370 1.07087 1.18460 1.01521 0.72450 0.73930 0.73033 1.53156 1.25029 1.93057 1.21050 1.93594 1.61822 1.68488 1.71578 1.93626 1.80457 1.40134 1.80707 1.20809 0.91842 1.00208 0.91125 0.92155 0.91917 0.91409 0.83937 0.92907 0.90256 0.94454 0.95524 0.92708 0.85016 0.84998 0.84351 0.75021 0.75628 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.14 37.16 0.34 -0.98 16 2 C 0.12 1.13 2.79 -68.86 -0.19 0.94 16 3 H 0.09 0.91 7.66 -51.93 -0.40 0.51 16 4 N -0.69 -7.83 5.41 -107.95 -0.58 -8.42 16 5 C 0.07 0.89 4.85 -3.83 -0.02 0.87 16 6 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 7 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 8 C 0.25 5.18 13.67 -20.74 -0.28 4.90 16 9 N -0.48 -10.83 18.54 42.17 0.78 -10.05 16 10 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 11 C -0.53 -13.81 8.60 -34.44 -0.30 -14.10 16 12 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.08 -0.80 4.95 -104.62 -0.52 -1.32 16 20 C -0.04 -0.34 9.32 -39.58 -0.37 -0.71 16 21 C -0.14 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.02 -0.21 9.52 -39.58 -0.38 -0.59 16 23 C -0.68 -6.18 5.97 -39.58 -0.24 -6.42 16 24 S 2.70 23.42 6.28 -107.50 -0.68 22.74 16 25 N -1.25 -5.21 9.52 60.35 0.57 -4.63 16 26 O -0.97 -11.22 17.28 -57.17 -0.99 -12.20 16 27 O -0.96 -11.78 17.28 -57.17 -0.99 -12.77 16 28 C -0.02 -0.19 9.14 -39.59 -0.36 -0.56 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.52 7.45 -51.93 -0.39 0.13 16 32 H 0.34 3.33 7.82 -39.29 -0.31 3.03 16 33 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 34 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.13 1.06 7.26 -52.49 -0.38 0.68 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.14 1.01 7.62 -52.49 -0.40 0.61 16 41 H 0.42 1.07 8.96 -34.47 -0.31 0.76 16 42 H 0.42 0.80 8.96 -34.47 -0.31 0.50 16 43 H 0.14 1.19 7.60 -52.49 -0.40 0.79 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -36.58 382.20 -9.32 -45.90 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.76 Total: -0.52 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -3.15 Total: -17.41 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 1.51 Total: -47.61 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.98 Total: -24.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 23.42 SS G_CDS: -0.68 Total: 22.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.58 -9.32 -45.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.978 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds