Wall clock time and date at job start Tue Mar 31 2020 20:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47391 * 2 1 4 4 N 1.46897 * 109.46969 * 120.00324 * 2 1 3 5 5 C 1.46897 * 110.99963 * 274.99294 * 4 2 1 6 6 C 1.53005 * 109.46985 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.46978 * 305.00137 * 6 5 4 8 8 C 1.47197 * 109.46945 * 64.99991 * 6 5 4 9 9 N 4.90933 * 135.91448 * 112.23566 * 2 1 3 10 10 C 1.53006 * 109.46916 * 185.00325 * 6 5 4 11 11 C 1.50701 * 109.46786 * 174.99785 * 10 6 5 12 12 H 1.07997 * 120.00263 * 0.02562 * 11 10 6 13 13 C 1.37878 * 119.99707 * 179.97438 * 11 10 6 14 14 N 1.31514 * 120.00021 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46967 * 90.00167 * 15 13 11 17 17 H 1.48492 * 109.46980 * 209.99864 * 15 13 11 18 18 H 1.48492 * 109.47029 * 330.00339 * 15 13 11 19 19 C 1.50708 * 109.46548 * 240.00111 * 2 1 3 20 20 C 1.38254 * 119.99823 * 280.02144 * 19 2 1 21 21 C 1.38216 * 119.99725 * 179.97438 * 20 19 2 22 22 C 1.38256 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38208 * 119.99920 * 359.73680 * 22 21 20 24 24 S 1.76200 * 120.00281 * 180.27729 * 23 22 21 25 25 N 1.65595 * 107.22213 * 270.23935 * 24 23 22 26 26 O 1.42107 * 106.39717 * 23.78116 * 24 23 22 27 27 O 1.42097 * 106.40128 * 156.69772 * 24 23 22 28 28 C 1.38212 * 119.99857 * 100.00548 * 19 2 1 29 29 H 1.08997 * 109.47852 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46920 * 299.99758 * 1 2 3 31 31 H 1.09000 * 109.47366 * 59.99798 * 1 2 3 32 32 H 1.00901 * 110.99662 * 151.04294 * 4 2 1 33 33 H 1.08995 * 109.47499 * 299.99996 * 5 4 2 34 34 H 1.09002 * 109.46732 * 60.00859 * 5 4 2 35 35 H 1.09001 * 109.46957 * 295.00077 * 10 6 5 36 36 H 1.08994 * 109.47062 * 54.99649 * 10 6 5 37 37 H 0.96996 * 120.00277 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.00472 * 0.02562 * 20 19 2 39 39 H 1.08001 * 119.99666 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00076 * 180.02562 * 22 21 20 41 41 H 0.96999 * 120.00360 * 149.99346 * 25 24 23 42 42 H 0.96998 * 119.99831 * 330.00100 * 25 24 23 43 43 H 1.08002 * 119.99812 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5963 -0.5331 3.5741 7 1 1.9709 -1.4084 3.7499 8 6 3.9852 -0.9612 3.3408 9 7 5.0564 -1.2925 3.1616 10 6 2.5441 0.3850 4.7970 11 6 2.9330 -0.3941 6.0269 12 1 3.1919 -1.4393 5.9446 13 6 2.9593 0.2278 7.2572 14 7 2.6444 1.5008 7.3573 15 14 3.4420 -0.7377 8.7817 16 1 4.9108 -0.6458 8.9813 17 1 2.7454 -0.1740 9.9658 18 1 3.0539 -2.1606 8.6099 19 6 2.0322 -0.7104 -1.2306 20 6 2.0661 -2.0921 -1.2656 21 6 2.5262 -2.7437 -2.3944 22 6 2.9530 -2.0137 -3.4882 23 6 2.9145 -0.6326 -3.4550 24 16 3.4516 0.2977 -4.8517 25 7 5.0724 0.5779 -4.6604 26 8 3.3226 -0.5592 -5.9781 27 8 2.8121 1.5634 -4.7608 28 6 2.4586 0.0193 -2.3242 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1206 1.0286 33 1 2.7590 1.0460 2.1182 34 1 1.0871 0.6162 2.5525 35 1 3.2371 1.2148 4.6581 36 1 1.5326 0.7728 4.9172 37 1 2.6633 1.9385 8.2227 38 1 1.7323 -2.6624 -0.4114 39 1 2.5523 -3.8230 -2.4219 40 1 3.3121 -2.5228 -4.3704 41 1 5.6444 0.6672 -5.4387 42 1 5.4498 0.6526 -3.7700 43 1 2.4314 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579278655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:48 Heat of formation + Delta-G solvation = -37.590556 kcal Electronic energy + Delta-G solvation = -25839.762554 eV Core-core repulsion = 22011.287069 eV Total energy + Delta-G solvation = -3828.475485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03726 -37.66182 -37.49766 -36.18213 -35.87114 -33.93526 -33.59591 -32.56524 -31.65368 -30.74539 -29.16372 -26.45504 -24.20028 -23.76944 -22.48594 -21.90999 -21.07949 -19.71428 -18.36273 -17.75129 -17.17470 -16.86340 -16.60931 -16.35840 -15.92889 -15.79656 -15.23775 -14.77917 -14.57783 -14.24837 -14.06868 -13.53187 -13.23320 -13.06933 -12.82759 -12.64511 -12.52089 -12.49965 -12.41888 -12.27117 -12.25421 -12.09954 -11.89670 -11.74799 -11.35245 -11.19440 -11.11082 -10.94889 -10.81515 -10.80196 -10.57566 -10.32669 -9.74761 -9.62182 -9.32396 -9.20376 -8.53503 -8.49332 -6.14300 -4.17737 0.01731 0.44865 0.88137 2.73256 3.06647 3.26229 3.33127 3.36047 3.38744 3.48030 3.53450 3.92534 4.16333 4.35716 4.37937 4.49506 4.66263 4.71702 4.88121 4.99939 5.07118 5.17511 5.23846 5.37469 5.45880 5.48542 5.56334 5.59178 5.61626 5.69215 5.79913 5.92968 6.02444 6.04957 6.17998 6.29928 6.44705 6.46835 6.60433 6.95340 7.26548 7.37714 7.46549 7.80393 8.17533 8.31179 8.86750 9.48045 10.96538 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002119 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.964333 B =13209.852186 C =13261.763639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.120 3.880 3 H 0.058 0.942 4 N -0.686 5.686 5 C 0.066 3.934 6 C 0.007 3.993 7 H 0.112 0.888 8 C 0.240 3.760 9 N -0.476 5.476 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.106 4.106 20 C -0.039 4.039 21 C -0.141 4.141 22 C -0.020 4.020 23 C -0.678 4.678 24 S 2.703 3.297 25 N -1.249 6.249 26 O -0.965 6.965 27 O -0.961 6.961 28 C -0.017 4.017 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.340 0.660 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.420 0.580 42 H 0.418 0.582 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -3.380 -23.797 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.076 0.924 4 N -0.318 5.318 5 C -0.064 4.064 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.153 5.153 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.108 4.108 20 C -0.058 4.058 21 C -0.160 4.160 22 C -0.040 4.040 23 C -0.766 4.766 24 S 2.792 3.208 25 N -0.923 5.923 26 O -0.955 6.955 27 O -0.950 6.950 28 C -0.037 4.037 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.055 0.945 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.251 0.749 42 H 0.245 0.755 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.191 -3.727 -24.508 24.819 hybrid contribution 1.197 -0.162 1.640 2.037 sum 0.007 -3.889 -22.868 23.197 Atomic orbital electron populations 1.21808 0.92943 1.02831 1.01883 1.20500 0.96606 0.95506 0.86298 0.92365 1.60742 1.33421 1.33607 1.03984 1.22166 1.01992 0.93367 0.88830 1.19335 0.83648 1.01579 0.96939 0.87069 1.29316 0.95166 0.91975 0.91172 1.81019 1.12615 1.10628 1.11038 1.19163 0.98940 0.93726 0.88770 1.21128 1.46764 0.96674 0.91976 0.92525 1.24954 0.94990 0.94886 0.99138 1.69931 1.48141 1.09932 1.24959 0.86588 0.78663 0.80295 0.82505 1.20689 1.21055 1.19727 1.20180 1.00226 0.94315 0.96051 1.21542 0.92374 0.94123 0.97744 1.21372 1.00401 1.00664 0.93526 1.20942 0.93055 0.91675 0.98287 1.30553 1.19944 1.07145 1.18959 1.01475 0.72398 0.73884 0.73060 1.53127 1.29569 1.92385 1.17209 1.93595 1.85433 1.67756 1.48719 1.93621 1.74028 1.41210 1.86165 1.20876 0.91885 1.00322 0.90631 0.91724 0.91494 0.92521 0.84174 0.94459 0.88744 0.95762 0.94156 0.92750 0.83880 0.84760 0.84207 0.74945 0.75462 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.39 37.16 0.35 -0.92 16 2 C 0.12 1.20 2.82 -68.86 -0.19 1.01 16 3 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 4 N -0.69 -7.90 5.69 -107.95 -0.61 -8.52 16 5 C 0.07 0.89 4.92 -3.82 -0.02 0.87 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.11 16 7 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 8 C 0.24 4.59 12.97 -20.78 -0.27 4.32 16 9 N -0.48 -9.87 18.53 42.13 0.78 -9.09 16 10 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 11 C -0.53 -13.67 8.60 -34.44 -0.30 -13.97 16 12 H 0.06 1.46 7.59 -52.49 -0.40 1.07 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 15 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.11 -1.03 4.71 -104.62 -0.49 -1.52 16 20 C -0.04 -0.36 9.01 -39.58 -0.36 -0.71 16 21 C -0.14 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.02 -0.17 9.52 -39.59 -0.38 -0.54 16 23 C -0.68 -5.91 5.97 -39.58 -0.24 -6.15 16 24 S 2.70 22.53 6.28 -107.50 -0.68 21.86 16 25 N -1.25 -6.05 9.52 60.35 0.57 -5.48 16 26 O -0.97 -10.60 17.29 -57.17 -0.99 -11.59 16 27 O -0.96 -11.15 17.28 -57.17 -0.99 -12.14 16 28 C -0.02 -0.16 9.15 -39.58 -0.36 -0.52 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.34 4.13 7.06 -39.29 -0.28 3.85 16 33 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.09 1.18 7.44 -51.93 -0.39 0.79 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.14 1.23 7.72 -52.49 -0.41 0.83 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.94 7.62 -52.49 -0.40 0.54 16 41 H 0.42 1.33 8.96 -34.47 -0.31 1.02 16 42 H 0.42 1.36 8.96 -34.46 -0.31 1.06 16 43 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -34.43 381.36 -9.31 -43.74 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.76 Total: 1.46 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.10 Total: -17.60 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 1.48 Total: -47.42 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.98 Total: -23.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 22.53 SS G_CDS: -0.68 Total: 21.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.43 -9.31 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.148 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds