Wall clock time and date at job start Tue Mar 31 2020 20:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47391 * 2 1 4 4 N 1.46897 * 109.46969 * 120.00324 * 2 1 3 5 5 C 1.46897 * 110.99963 * 274.99294 * 4 2 1 6 6 C 1.53005 * 109.46985 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.46978 * 305.00137 * 6 5 4 8 8 C 1.47197 * 109.46945 * 64.99991 * 6 5 4 9 9 N 4.90933 * 135.91448 * 112.23566 * 2 1 3 10 10 C 1.53006 * 109.46916 * 185.00325 * 6 5 4 11 11 C 1.50701 * 109.46786 * 174.99785 * 10 6 5 12 12 H 1.07997 * 120.00263 * 0.02562 * 11 10 6 13 13 C 1.37878 * 119.99707 * 179.97438 * 11 10 6 14 14 N 1.31514 * 120.00021 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46967 * 90.00167 * 15 13 11 17 17 H 1.48492 * 109.46980 * 209.99864 * 15 13 11 18 18 H 1.48492 * 109.47029 * 330.00339 * 15 13 11 19 19 C 1.50708 * 109.46548 * 240.00111 * 2 1 3 20 20 C 1.38254 * 119.99823 * 280.02144 * 19 2 1 21 21 C 1.38216 * 119.99725 * 179.97438 * 20 19 2 22 22 C 1.38256 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38208 * 119.99920 * 359.73680 * 22 21 20 24 24 S 1.76200 * 120.00281 * 180.27729 * 23 22 21 25 25 N 1.65595 * 107.22213 * 270.23935 * 24 23 22 26 26 O 1.42107 * 106.39717 * 23.78116 * 24 23 22 27 27 O 1.42097 * 106.40128 * 156.69772 * 24 23 22 28 28 C 1.38212 * 119.99857 * 100.00548 * 19 2 1 29 29 H 1.08997 * 109.47852 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46920 * 299.99758 * 1 2 3 31 31 H 1.09000 * 109.47366 * 59.99798 * 1 2 3 32 32 H 1.00901 * 110.99662 * 151.04294 * 4 2 1 33 33 H 1.08995 * 109.47499 * 299.99996 * 5 4 2 34 34 H 1.09002 * 109.46732 * 60.00859 * 5 4 2 35 35 H 1.09001 * 109.46957 * 295.00077 * 10 6 5 36 36 H 1.08994 * 109.47062 * 54.99649 * 10 6 5 37 37 H 0.96996 * 120.00277 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.00472 * 0.02562 * 20 19 2 39 39 H 1.08001 * 119.99666 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00076 * 180.02562 * 22 21 20 41 41 H 0.96999 * 120.00360 * 149.99346 * 25 24 23 42 42 H 0.96998 * 119.99831 * 330.00100 * 25 24 23 43 43 H 1.08002 * 119.99812 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5963 -0.5331 3.5741 7 1 1.9709 -1.4084 3.7499 8 6 3.9852 -0.9612 3.3408 9 7 5.0564 -1.2925 3.1616 10 6 2.5441 0.3850 4.7970 11 6 2.9330 -0.3941 6.0269 12 1 3.1919 -1.4393 5.9446 13 6 2.9593 0.2278 7.2572 14 7 2.6444 1.5008 7.3573 15 14 3.4420 -0.7377 8.7817 16 1 4.9108 -0.6458 8.9813 17 1 2.7454 -0.1740 9.9658 18 1 3.0539 -2.1606 8.6099 19 6 2.0322 -0.7104 -1.2306 20 6 2.0661 -2.0921 -1.2656 21 6 2.5262 -2.7437 -2.3944 22 6 2.9530 -2.0137 -3.4882 23 6 2.9145 -0.6326 -3.4550 24 16 3.4516 0.2977 -4.8517 25 7 5.0724 0.5779 -4.6604 26 8 3.3226 -0.5592 -5.9781 27 8 2.8121 1.5634 -4.7608 28 6 2.4586 0.0193 -2.3242 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1206 1.0286 33 1 2.7590 1.0460 2.1182 34 1 1.0871 0.6162 2.5525 35 1 3.2371 1.2148 4.6581 36 1 1.5326 0.7728 4.9172 37 1 2.6633 1.9385 8.2227 38 1 1.7323 -2.6624 -0.4114 39 1 2.5523 -3.8230 -2.4219 40 1 3.3121 -2.5228 -4.3704 41 1 5.6444 0.6672 -5.4387 42 1 5.4498 0.6526 -3.7700 43 1 2.4314 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579278655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:47 Heat of formation + Delta-G solvation = -63.131562 kcal Electronic energy + Delta-G solvation = -25840.870095 eV Core-core repulsion = 22011.287069 eV Total energy + Delta-G solvation = -3829.583026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74574 -38.88366 -38.28904 -37.07816 -36.95889 -35.59902 -34.11948 -34.06933 -32.31467 -31.92808 -30.04151 -28.04198 -25.20844 -24.58241 -23.72500 -23.32483 -21.85919 -20.37271 -19.05639 -18.52583 -18.37056 -18.24130 -17.75890 -17.13157 -16.81971 -16.62316 -16.57104 -16.00639 -15.40749 -15.26581 -14.93894 -14.73924 -14.53947 -14.31020 -14.02100 -13.90105 -13.52512 -13.34462 -13.29406 -13.23738 -13.21894 -13.11579 -13.08301 -12.92795 -12.78083 -12.54760 -12.46730 -12.27663 -11.99114 -11.86245 -11.73081 -11.40034 -11.32656 -11.13419 -10.55342 -10.40455 -9.92803 -9.46805 -8.19423 -6.27374 -0.64078 -0.23439 0.21089 1.40001 1.42400 1.51304 1.94733 1.96785 2.13008 2.39569 2.41664 2.74433 3.06519 3.16027 3.25577 3.38355 3.66518 3.84411 4.05149 4.14453 4.21374 4.26185 4.38059 4.43939 4.53177 4.69781 4.70103 4.83815 4.87930 4.95149 4.96066 5.06752 5.09466 5.21933 5.27914 5.37297 5.43378 5.48463 5.63663 5.79695 5.79926 5.99936 6.21123 6.29117 6.29827 6.75583 6.88055 7.41288 8.91403 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002119 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.964333 B =13209.852186 C =13261.763639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.121 3.879 3 H 0.061 0.939 4 N -0.680 5.680 5 C 0.077 3.923 6 C 0.020 3.980 7 H 0.125 0.875 8 C 0.251 3.749 9 N -0.504 5.504 10 C 0.038 3.962 11 C -0.538 4.538 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.947 3.053 16 H -0.284 1.284 17 H -0.280 1.280 18 H -0.264 1.264 19 C -0.116 4.116 20 C -0.047 4.047 21 C -0.142 4.142 22 C -0.027 4.027 23 C -0.679 4.679 24 S 2.727 3.273 25 N -1.235 6.235 26 O -0.992 6.992 27 O -0.995 6.995 28 C -0.028 4.028 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.337 0.663 33 H 0.035 0.965 34 H 0.108 0.892 35 H 0.000 1.000 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.430 0.570 42 H 0.428 0.572 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 -4.466 -24.403 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.079 0.921 4 N -0.312 5.312 5 C -0.053 4.053 6 C -0.002 4.002 7 H 0.143 0.857 8 C -0.065 4.065 9 N -0.181 5.181 10 C -0.001 4.001 11 C -0.576 4.576 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.773 3.227 16 H -0.211 1.211 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.117 4.117 20 C -0.065 4.065 21 C -0.160 4.160 22 C -0.046 4.046 23 C -0.767 4.767 24 S 2.816 3.184 25 N -0.914 5.914 26 O -0.981 6.981 27 O -0.985 6.985 28 C -0.048 4.048 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.173 0.827 41 H 0.263 0.737 42 H 0.257 0.743 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.243 -4.819 -25.130 25.618 hybrid contribution 1.245 0.158 1.796 2.191 sum 0.002 -4.661 -23.334 23.795 Atomic orbital electron populations 1.21792 0.92310 1.02904 1.02217 1.20526 0.97034 0.95507 0.85745 0.92138 1.60711 1.33190 1.33159 1.04110 1.22003 1.02371 0.92920 0.88024 1.19220 0.83000 1.01304 0.96671 0.85746 1.29646 0.95337 0.91200 0.90351 1.81020 1.13414 1.11658 1.12037 1.18988 0.97780 0.93497 0.89829 1.21559 1.45798 0.96856 0.93373 0.92743 1.25704 0.95357 0.95731 1.02006 1.70024 1.49548 1.11200 1.25564 0.85718 0.77950 0.79496 0.79569 1.21061 1.20485 1.18820 1.20175 1.00869 0.94686 0.95960 1.21672 0.92576 0.93985 0.98313 1.21657 0.99506 1.01903 0.92948 1.21229 0.92773 0.91604 0.98976 1.30516 1.20122 1.07464 1.18591 1.00529 0.72725 0.72858 0.72266 1.52776 1.28318 1.91930 1.18331 1.93557 1.86188 1.68252 1.50150 1.93583 1.75427 1.42844 1.86600 1.21002 0.92194 1.00774 0.90851 0.91769 0.91554 0.91803 0.84481 0.94687 0.87419 0.98174 0.94482 0.92742 0.83526 0.82527 0.82716 0.73701 0.74258 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.39 71.98 0.68 -1.60 16 2 C 0.12 2.24 2.82 44.17 0.12 2.37 16 3 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 4 N -0.68 -14.58 5.69 -495.45 -2.82 -17.40 16 5 C 0.08 1.95 4.92 86.31 0.42 2.37 16 6 C 0.02 0.66 2.42 -12.60 -0.03 0.63 16 7 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 8 C 0.25 9.36 12.97 89.45 1.16 10.53 16 9 N -0.50 -20.54 18.53 20.00 0.37 -20.17 16 10 C 0.04 1.68 4.42 29.85 0.13 1.81 16 11 C -0.54 -27.69 8.60 25.60 0.22 -27.47 16 12 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 13 C 0.01 0.59 5.46 84.65 0.46 1.05 16 14 N -0.92 -52.19 13.29 21.45 0.28 -51.90 16 15 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 C -0.12 -2.08 4.71 -19.86 -0.09 -2.17 16 20 C -0.05 -0.78 9.01 22.27 0.20 -0.58 16 21 C -0.14 -2.02 10.05 22.27 0.22 -1.80 16 22 C -0.03 -0.40 9.52 22.27 0.21 -0.18 16 23 C -0.68 -11.01 5.97 22.27 0.13 -10.88 16 24 S 2.73 43.17 6.28 -56.49 -0.35 42.82 16 25 N -1.23 -10.25 9.52 37.02 0.35 -9.90 16 26 O -0.99 -20.94 17.29 -128.00 -2.21 -23.15 16 27 O -1.00 -22.70 17.28 -128.00 -2.21 -24.91 16 28 C -0.03 -0.50 9.15 22.27 0.20 -0.30 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.13 7.45 -2.38 -0.02 1.11 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.34 7.69 7.06 -89.69 -0.63 7.05 16 33 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 34 H 0.11 2.49 7.44 -2.39 -0.02 2.47 16 35 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.15 2.27 7.72 -2.91 -0.02 2.25 16 39 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.16 1.79 7.62 -2.91 -0.02 1.77 16 41 H 0.43 2.07 8.96 -96.75 -0.87 1.20 16 42 H 0.43 2.11 8.96 -96.75 -0.87 1.25 16 43 H 0.15 2.32 7.60 -2.91 -0.02 2.30 16 Total: -1.00 -72.34 381.36 -1.82 -74.16 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -1.30 Total: 12.01 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.05 Total: -26.24 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -1.81 Total: -99.38 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -4.43 Total: -48.06 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 43.17 SS G_CDS: -0.35 Total: 42.82 kcal Total: -72.34 -1.82 -74.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579278655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.029 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds