Wall clock time and date at job start Tue Mar 31 2020 20:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.50327 * 2 1 4 4 C 1.53195 * 109.49530 * 120.06503 * 2 1 3 5 5 N 1.46930 * 108.77811 * 65.34704 * 4 2 1 6 6 S 1.65599 * 120.62931 * 233.58414 * 5 4 2 7 7 O 1.42095 * 104.27362 * 206.06843 * 6 5 4 8 8 O 1.42096 * 104.27730 * 333.93024 * 6 5 4 9 9 C 1.81402 * 104.44679 * 89.99951 * 6 5 4 10 10 C 1.53002 * 109.46904 * 173.47323 * 9 6 5 11 11 C 1.50699 * 115.55052 * 65.18541 * 10 9 6 12 12 H 1.07999 * 119.99656 * 264.77911 * 11 10 9 13 13 C 1.37872 * 119.99862 * 84.78669 * 11 10 9 14 14 N 1.31510 * 120.00544 * 352.24657 * 13 11 10 15 15 Si 1.86802 * 119.99921 * 172.24609 * 13 11 10 16 16 H 1.48505 * 109.47086 * 59.99776 * 15 13 11 17 17 H 1.48493 * 109.47560 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47015 * 300.00028 * 15 13 11 19 19 C 1.53005 * 117.49604 * 279.51490 * 10 9 6 20 20 C 1.52999 * 117.49620 * 210.85441 * 10 9 6 21 21 C 1.46920 * 118.73445 * 53.85828 * 5 4 2 22 22 C 1.53618 * 108.54638 * 306.09340 * 21 5 4 23 23 H 1.09001 * 109.63642 * 294.86548 * 22 21 5 24 24 C 1.53003 * 109.45937 * 174.74409 * 22 21 5 25 25 C 1.53039 * 109.52364 * 239.91371 * 2 1 3 26 26 F 1.39904 * 109.45568 * 61.42418 * 25 2 1 27 27 F 1.39902 * 109.46388 * 181.37737 * 25 2 1 28 28 H 1.09001 * 109.47077 * 299.93885 * 1 2 3 29 29 H 1.09001 * 109.47049 * 59.93294 * 1 2 3 30 30 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.58991 * 305.55510 * 4 2 1 32 32 H 1.09007 * 109.58707 * 185.13348 * 4 2 1 33 33 H 1.09003 * 109.47230 * 293.47235 * 9 6 5 34 34 H 1.08995 * 109.47232 * 53.47168 * 9 6 5 35 35 H 0.96999 * 120.00416 * 185.02696 * 14 13 11 36 36 H 1.08995 * 117.49886 * 0.02562 * 19 10 9 37 37 H 1.08997 * 117.49536 * 145.02668 * 19 10 9 38 38 H 1.09004 * 117.50264 * 214.97614 * 20 10 9 39 39 H 1.09004 * 117.49958 * 359.97438 * 20 10 9 40 40 H 1.09002 * 109.58966 * 65.93477 * 21 5 4 41 41 H 1.09000 * 109.58507 * 186.35145 * 21 5 4 42 42 H 1.09000 * 109.46939 * 300.27116 * 24 22 21 43 43 H 1.08995 * 109.47106 * 60.27611 * 24 22 21 44 44 H 1.08996 * 109.47020 * 180.27621 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 1.2498 5 7 1.6521 -2.1381 1.1699 6 16 0.8205 -2.8557 2.4092 7 8 1.1549 -4.2327 2.3043 8 8 1.1808 -2.0995 3.5571 9 6 -0.9258 -2.5914 1.9953 10 6 -1.8061 -3.3536 2.9877 11 6 -1.7386 -2.8769 4.4158 12 1 -1.0713 -3.3588 5.1149 13 6 -2.5288 -1.8256 4.8296 14 7 -3.2262 -1.1409 3.9497 15 14 -2.6090 -1.3739 6.6404 16 1 -1.2511 -1.0129 7.1211 17 1 -3.5217 -0.2166 6.8220 18 1 -3.1175 -2.5326 7.4176 19 6 -2.0019 -4.8526 2.7518 20 6 -3.1510 -3.8782 2.4809 21 6 2.0201 -2.9053 -0.0278 22 6 1.5042 -2.1560 -1.2657 23 1 0.4144 -2.1362 -1.2541 24 6 1.9885 -2.8674 -2.5307 25 6 2.0414 -0.7231 -1.2481 26 9 1.6024 -0.0466 -2.3913 27 9 3.4401 -0.7498 -1.2310 28 1 -0.3633 0.5129 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6003 -0.2729 2.1390 32 1 3.1274 -0.6455 1.2986 33 1 -1.1549 -1.5271 2.0493 34 1 -1.1187 -2.9538 0.9856 35 1 -3.7244 -0.3570 4.2295 36 1 -1.5032 -5.2958 1.8899 37 1 -2.0824 -5.4939 3.6295 38 1 -3.9870 -3.8790 3.1804 39 1 -3.4088 -3.6799 1.4405 40 1 3.1045 -3.0017 -0.0811 41 1 1.5651 -3.8947 0.0180 42 1 3.0782 -2.8880 -2.5413 43 1 1.6056 -3.8878 -2.5428 44 1 1.6267 -2.3331 -3.4091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599377593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:44 Heat of formation + Delta-G solvation = -154.133126 kcal Electronic energy + Delta-G solvation = -30110.961337 eV Core-core repulsion = 25826.743001 eV Total energy + Delta-G solvation = -4284.218336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.06953 -47.01124 -38.64279 -36.82393 -36.44382 -35.19263 -33.72217 -32.75050 -32.09194 -28.35955 -27.17797 -26.52134 -25.50537 -24.32576 -22.33362 -21.26574 -19.93761 -19.43328 -18.55318 -17.60739 -17.11645 -16.71426 -16.54954 -16.19664 -15.83848 -15.23616 -14.82838 -14.75466 -14.49038 -13.95627 -13.82050 -13.48205 -13.41949 -13.30222 -13.17165 -13.04664 -12.73529 -12.43371 -12.24749 -12.01421 -11.94754 -11.84088 -11.76181 -11.61186 -11.36979 -11.24873 -11.16073 -11.03134 -10.94300 -10.76872 -10.63336 -10.50413 -10.27572 -10.16002 -9.77875 -9.04948 -8.97845 -8.60754 -8.13233 -6.18726 -4.29556 0.91274 3.14175 3.29466 3.31694 3.38204 3.62633 3.90119 4.13137 4.23435 4.33401 4.49708 4.55300 4.78473 4.83625 4.89557 5.07583 5.09997 5.14477 5.22633 5.27311 5.29727 5.44393 5.55084 5.60826 5.60875 5.70884 5.77312 5.82470 5.84091 5.87289 5.97993 6.08227 6.16983 6.24316 6.31808 6.55039 6.63841 6.67418 6.93818 7.18870 7.34168 7.75556 8.15094 8.75732 9.41969 10.88708 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004478 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.848106 B = 6250.606772 C = 6543.175218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.143 4.143 3 H 0.103 0.897 4 C 0.127 3.873 5 N -1.012 6.012 6 S 2.602 3.398 7 O -0.968 6.968 8 O -0.944 6.944 9 C -0.553 4.553 10 C 0.044 3.956 11 C -0.518 4.518 12 H 0.067 0.933 13 C 0.084 3.916 14 N -0.874 5.874 15 Si 0.890 3.110 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.208 4.208 20 C -0.140 4.140 21 C 0.128 3.872 22 C -0.150 4.150 23 H 0.109 0.891 24 C -0.152 4.152 25 C 0.300 3.700 26 F -0.200 7.200 27 F -0.198 7.198 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.895 1.294 -12.559 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.164 4.164 3 H 0.121 0.879 4 C 0.001 3.999 5 N -0.846 5.846 6 S 2.701 3.299 7 O -0.958 6.958 8 O -0.934 6.934 9 C -0.686 4.686 10 C 0.041 3.959 11 C -0.555 4.555 12 H 0.085 0.915 13 C -0.121 4.121 14 N -0.509 5.509 15 Si 0.716 3.284 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.246 4.246 20 C -0.179 4.179 21 C 0.002 3.998 22 C -0.170 4.170 23 H 0.127 0.873 24 C -0.209 4.209 25 C 0.264 3.736 26 F -0.181 7.181 27 F -0.179 7.179 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.197 1.007 -11.843 14.438 hybrid contribution -0.556 0.856 0.184 1.037 sum 7.641 1.863 -11.659 14.063 Atomic orbital electron populations 1.22033 0.92026 1.03733 1.03824 1.22508 0.99238 1.00945 0.93705 0.87888 1.21403 1.01039 0.80058 0.97382 1.58285 1.72191 1.19287 1.34852 1.05455 0.77538 0.73809 0.73084 1.93492 1.83330 1.33111 1.85902 1.93540 1.82110 1.71814 1.45965 1.30102 1.20637 1.11589 1.06319 1.18276 0.95254 0.88984 0.93363 1.20475 1.24747 1.17859 0.92392 0.91462 1.24931 0.93897 0.95519 0.97803 1.69956 1.30180 1.16812 1.33968 0.86671 0.78528 0.78079 0.85101 1.19458 1.21095 1.19857 1.23198 1.05208 0.94186 1.01959 1.22553 0.93071 1.03155 0.99156 1.21473 1.01518 0.94840 0.81928 1.22693 1.03531 0.92698 0.98100 0.87334 1.21792 1.02220 1.01117 0.95819 1.20974 0.75571 0.93217 0.83873 1.92980 1.89315 1.82175 1.53667 1.92971 1.30862 1.97305 1.96784 0.90250 0.91502 0.91221 0.87353 0.90360 0.84548 0.88477 0.92642 0.90722 0.89531 0.89579 0.91535 0.90265 0.87823 0.91623 0.90934 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.28 37.15 0.31 -1.56 16 2 C -0.14 -1.63 2.80 -90.50 -0.25 -1.89 16 3 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.13 1.66 5.50 -3.71 -0.02 1.64 16 5 N -1.01 -14.77 2.65 -113.27 -0.30 -15.07 16 6 S 2.60 50.35 5.14 -107.50 -0.55 49.80 16 7 O -0.97 -20.27 16.71 -57.54 -0.96 -21.24 16 8 O -0.94 -21.55 16.41 -57.54 -0.94 -22.49 16 9 C -0.55 -10.85 4.91 37.16 0.18 -10.67 16 10 C 0.04 1.02 1.32 -155.66 -0.21 0.81 16 11 C -0.52 -13.71 8.20 -34.44 -0.28 -14.00 16 12 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 13 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 14 N -0.87 -23.15 12.98 55.43 0.72 -22.43 16 15 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 19 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 20 C -0.14 -3.06 9.49 -26.69 -0.25 -3.32 16 21 C 0.13 1.57 5.42 -3.49 -0.02 1.55 16 22 C -0.15 -1.61 2.20 -90.28 -0.20 -1.81 16 23 H 0.11 1.11 6.34 -51.93 -0.33 0.78 16 24 C -0.15 -1.36 8.96 37.16 0.33 -1.03 16 25 C 0.30 3.49 1.28 -26.69 -0.03 3.46 16 26 F -0.20 -2.46 16.03 2.25 0.04 -2.43 16 27 F -0.20 -2.47 15.63 2.25 0.04 -2.43 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 30 H 0.07 0.84 4.37 -51.93 -0.23 0.61 16 31 H 0.11 1.49 7.10 -51.93 -0.37 1.12 16 32 H 0.08 0.93 7.92 -51.92 -0.41 0.52 16 33 H 0.14 2.76 7.60 -51.92 -0.39 2.36 16 34 H 0.10 1.57 7.92 -51.93 -0.41 1.16 16 35 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 41 H 0.10 1.24 7.09 -51.93 -0.37 0.87 16 42 H 0.06 0.58 7.84 -51.93 -0.41 0.18 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -30.91 362.98 -8.97 -39.88 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.64 Total: 4.49 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -0.81 Total: -29.36 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.42 Total: -37.50 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.91 Total: -43.73 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 50.35 SS G_CDS: -0.55 Total: 49.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.91 -8.97 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599377593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.255 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds