Wall clock time and date at job start Tue Mar 31 2020 20:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.50327 * 2 1 4 4 C 1.53195 * 109.49530 * 120.06503 * 2 1 3 5 5 N 1.46930 * 108.77811 * 65.34704 * 4 2 1 6 6 S 1.65599 * 120.62931 * 233.58414 * 5 4 2 7 7 O 1.42095 * 104.27362 * 206.06843 * 6 5 4 8 8 O 1.42096 * 104.27730 * 333.93024 * 6 5 4 9 9 C 1.81402 * 104.44679 * 89.99951 * 6 5 4 10 10 C 1.53002 * 109.46904 * 173.47323 * 9 6 5 11 11 C 1.50699 * 115.55052 * 65.18541 * 10 9 6 12 12 H 1.07999 * 119.99656 * 264.77911 * 11 10 9 13 13 C 1.37872 * 119.99862 * 84.78669 * 11 10 9 14 14 N 1.31510 * 120.00544 * 352.24657 * 13 11 10 15 15 Si 1.86802 * 119.99921 * 172.24609 * 13 11 10 16 16 H 1.48505 * 109.47086 * 59.99776 * 15 13 11 17 17 H 1.48493 * 109.47560 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47015 * 300.00028 * 15 13 11 19 19 C 1.53005 * 117.49604 * 279.51490 * 10 9 6 20 20 C 1.52999 * 117.49620 * 210.85441 * 10 9 6 21 21 C 1.46920 * 118.73445 * 53.85828 * 5 4 2 22 22 C 1.53618 * 108.54638 * 306.09340 * 21 5 4 23 23 H 1.09001 * 109.63642 * 294.86548 * 22 21 5 24 24 C 1.53003 * 109.45937 * 174.74409 * 22 21 5 25 25 C 1.53039 * 109.52364 * 239.91371 * 2 1 3 26 26 F 1.39904 * 109.45568 * 61.42418 * 25 2 1 27 27 F 1.39902 * 109.46388 * 181.37737 * 25 2 1 28 28 H 1.09001 * 109.47077 * 299.93885 * 1 2 3 29 29 H 1.09001 * 109.47049 * 59.93294 * 1 2 3 30 30 H 1.08998 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.58991 * 305.55510 * 4 2 1 32 32 H 1.09007 * 109.58707 * 185.13348 * 4 2 1 33 33 H 1.09003 * 109.47230 * 293.47235 * 9 6 5 34 34 H 1.08995 * 109.47232 * 53.47168 * 9 6 5 35 35 H 0.96999 * 120.00416 * 185.02696 * 14 13 11 36 36 H 1.08995 * 117.49886 * 0.02562 * 19 10 9 37 37 H 1.08997 * 117.49536 * 145.02668 * 19 10 9 38 38 H 1.09004 * 117.50264 * 214.97614 * 20 10 9 39 39 H 1.09004 * 117.49958 * 359.97438 * 20 10 9 40 40 H 1.09002 * 109.58966 * 65.93477 * 21 5 4 41 41 H 1.09000 * 109.58507 * 186.35145 * 21 5 4 42 42 H 1.09000 * 109.46939 * 300.27116 * 24 22 21 43 43 H 1.08995 * 109.47106 * 60.27611 * 24 22 21 44 44 H 1.08996 * 109.47020 * 180.27621 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 1.2498 5 7 1.6521 -2.1381 1.1699 6 16 0.8205 -2.8557 2.4092 7 8 1.1549 -4.2327 2.3043 8 8 1.1808 -2.0995 3.5571 9 6 -0.9258 -2.5914 1.9953 10 6 -1.8061 -3.3536 2.9877 11 6 -1.7386 -2.8769 4.4158 12 1 -1.0713 -3.3588 5.1149 13 6 -2.5288 -1.8256 4.8296 14 7 -3.2262 -1.1409 3.9497 15 14 -2.6090 -1.3739 6.6404 16 1 -1.2511 -1.0129 7.1211 17 1 -3.5217 -0.2166 6.8220 18 1 -3.1175 -2.5326 7.4176 19 6 -2.0019 -4.8526 2.7518 20 6 -3.1510 -3.8782 2.4809 21 6 2.0201 -2.9053 -0.0278 22 6 1.5042 -2.1560 -1.2657 23 1 0.4144 -2.1362 -1.2541 24 6 1.9885 -2.8674 -2.5307 25 6 2.0414 -0.7231 -1.2481 26 9 1.6024 -0.0466 -2.3913 27 9 3.4401 -0.7498 -1.2310 28 1 -0.3633 0.5129 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6003 -0.2729 2.1390 32 1 3.1274 -0.6455 1.2986 33 1 -1.1549 -1.5271 2.0493 34 1 -1.1187 -2.9538 0.9856 35 1 -3.7244 -0.3570 4.2295 36 1 -1.5032 -5.2958 1.8899 37 1 -2.0824 -5.4939 3.6295 38 1 -3.9870 -3.8790 3.1804 39 1 -3.4088 -3.6799 1.4405 40 1 3.1045 -3.0017 -0.0811 41 1 1.5651 -3.8947 0.0180 42 1 3.0782 -2.8880 -2.5413 43 1 1.6056 -3.8878 -2.5428 44 1 1.6267 -2.3331 -3.4091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599377593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:43 Heat of formation + Delta-G solvation = -172.384713 kcal Electronic energy + Delta-G solvation = -30111.752786 eV Core-core repulsion = 25826.743001 eV Total energy + Delta-G solvation = -4285.009785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.99618 -47.94337 -39.64532 -38.55910 -38.05570 -36.81878 -34.60031 -34.07193 -33.80312 -29.93053 -28.12657 -27.60783 -27.26401 -25.39273 -23.22272 -22.96956 -21.46483 -20.68394 -19.84683 -18.83195 -18.37080 -18.20010 -17.63627 -17.32171 -17.09177 -16.70059 -16.61948 -15.93193 -15.85533 -15.53857 -14.92580 -14.83722 -14.42369 -14.38576 -14.21521 -13.95327 -13.79023 -13.72398 -13.58164 -13.40967 -13.24602 -13.10921 -12.99072 -12.90067 -12.84907 -12.79461 -12.58333 -12.54426 -12.43166 -12.22041 -12.07713 -11.92617 -11.72086 -11.52222 -11.17457 -10.86699 -10.53562 -10.24580 -9.78238 -8.18324 -6.32468 -0.58793 1.40225 1.41457 1.48567 1.82447 2.40376 2.71856 2.96520 3.00898 3.08379 3.22742 3.29303 3.36567 3.41899 3.67898 3.73669 3.98444 4.06024 4.23862 4.30637 4.31208 4.40629 4.43496 4.49534 4.52525 4.61007 4.70746 4.78670 4.81668 4.85044 4.88314 4.90363 4.99892 5.02053 5.07213 5.22817 5.26809 5.31337 5.47135 5.55889 5.61028 5.72789 6.24064 6.72864 7.39707 8.88131 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004478 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.848106 B = 6250.606772 C = 6543.175218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 H 0.119 0.881 4 C 0.121 3.879 5 N -1.003 6.003 6 S 2.616 3.384 7 O -0.987 6.987 8 O -0.988 6.988 9 C -0.548 4.548 10 C 0.012 3.988 11 C -0.536 4.536 12 H 0.046 0.954 13 C 0.047 3.953 14 N -0.888 5.888 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.274 1.274 18 H -0.270 1.270 19 C -0.197 4.197 20 C -0.137 4.137 21 C 0.121 3.879 22 C -0.147 4.147 23 H 0.116 0.884 24 C -0.150 4.150 25 C 0.299 3.701 26 F -0.203 7.203 27 F -0.203 7.203 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.266 0.734 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 1.259 -14.439 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.159 4.159 3 H 0.137 0.863 4 C -0.004 4.004 5 N -0.840 5.840 6 S 2.715 3.285 7 O -0.977 6.977 8 O -0.978 6.978 9 C -0.681 4.681 10 C 0.010 3.990 11 C -0.573 4.573 12 H 0.064 0.936 13 C -0.156 4.156 14 N -0.524 5.524 15 Si 0.755 3.245 16 H -0.203 1.203 17 H -0.199 1.199 18 H -0.195 1.195 19 C -0.235 4.235 20 C -0.176 4.176 21 C -0.004 4.004 22 C -0.168 4.168 23 H 0.134 0.866 24 C -0.207 4.207 25 C 0.263 3.737 26 F -0.184 7.184 27 F -0.184 7.184 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.463 0.962 -13.718 16.147 hybrid contribution -0.589 0.859 0.733 1.273 sum 7.874 1.821 -12.985 15.295 Atomic orbital electron populations 1.22044 0.92232 1.03572 1.03951 1.22471 0.99009 1.01612 0.92787 0.86264 1.21562 1.01811 0.79133 0.97927 1.57865 1.71317 1.20056 1.34753 1.04741 0.77512 0.73142 0.73099 1.93455 1.83592 1.34294 1.86397 1.93481 1.82790 1.72623 1.48895 1.29963 1.20200 1.10660 1.07277 1.18398 0.97055 0.90761 0.92809 1.20646 1.24454 1.18044 0.94191 0.93614 1.25438 0.93959 0.95704 1.00515 1.69991 1.30550 1.17025 1.34806 0.86046 0.78138 0.78256 0.82033 1.20314 1.19875 1.19496 1.23248 1.04473 0.93122 1.02616 1.22509 0.92058 1.03222 0.99815 1.21745 1.02363 0.95009 0.81278 1.22708 1.03972 0.92034 0.98068 0.86572 1.21806 1.02319 1.01821 0.94796 1.21043 0.75321 0.93739 0.83632 1.92977 1.89322 1.82297 1.53761 1.92965 1.31282 1.97344 1.96788 0.91205 0.90319 0.91538 0.88519 0.89092 0.85359 0.84876 0.92514 0.88103 0.90225 0.91741 0.89190 0.89249 0.87266 0.91571 0.89412 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.28 71.98 0.60 -2.91 16 2 C -0.14 -2.89 2.80 -10.72 -0.03 -2.92 16 3 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.12 3.02 5.50 86.36 0.48 3.49 16 5 N -1.00 -27.86 2.65 -512.28 -1.36 -29.22 16 6 S 2.62 99.86 5.14 -56.49 -0.29 99.57 16 7 O -0.99 -40.44 16.71 -127.65 -2.13 -42.58 16 8 O -0.99 -45.92 16.41 -127.65 -2.09 -48.01 16 9 C -0.55 -20.88 4.91 71.98 0.35 -20.53 16 10 C 0.01 0.55 1.32 -52.93 -0.07 0.48 16 11 C -0.54 -28.83 8.20 25.60 0.21 -28.62 16 12 H 0.05 2.58 7.83 -2.91 -0.02 2.56 16 13 C 0.05 2.51 5.38 84.65 0.46 2.97 16 14 N -0.89 -47.07 12.98 21.44 0.28 -46.79 16 15 Si 0.93 42.98 29.55 68.60 2.03 45.01 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.20 -8.08 9.96 30.62 0.30 -7.78 16 20 C -0.14 -5.84 9.49 30.62 0.29 -5.55 16 21 C 0.12 2.67 5.42 86.51 0.47 3.14 16 22 C -0.15 -2.75 2.20 -10.57 -0.02 -2.77 16 23 H 0.12 2.01 6.34 -2.39 -0.02 2.00 16 24 C -0.15 -2.23 8.96 71.98 0.64 -1.58 16 25 C 0.30 6.21 1.28 30.62 0.04 6.25 16 26 F -0.20 -4.45 16.03 44.97 0.72 -3.73 16 27 F -0.20 -4.56 15.63 44.97 0.70 -3.86 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.51 7.85 -2.39 -0.02 1.49 16 30 H 0.07 1.47 4.37 -2.39 -0.01 1.46 16 31 H 0.10 2.66 7.10 -2.39 -0.02 2.64 16 32 H 0.09 2.04 7.92 -2.38 -0.02 2.02 16 33 H 0.13 5.13 7.60 -2.39 -0.02 5.11 16 34 H 0.13 3.96 7.92 -2.39 -0.02 3.94 16 35 H 0.27 13.46 8.32 -92.71 -0.77 12.69 16 36 H 0.10 3.56 8.14 -2.39 -0.02 3.55 16 37 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.09 1.82 7.92 -2.39 -0.02 1.80 16 41 H 0.11 2.32 7.09 -2.39 -0.02 2.30 16 42 H 0.07 0.99 7.84 -2.39 -0.02 0.97 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.02 7.77 -2.39 -0.02 1.00 16 Total: -1.00 -65.84 362.98 2.57 -63.27 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.00 Total: 22.66 kcal Atomic # 6 Polarization: -60.04 SS G_CDS: 3.72 Total: -56.32 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.08 Total: -76.01 kcal Atomic # 8 Polarization: -86.36 SS G_CDS: -4.23 Total: -90.59 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 1.42 Total: -7.59 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 99.86 SS G_CDS: -0.29 Total: 99.57 kcal Total: -65.84 2.57 -63.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599377593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.113 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds