Wall clock time and date at job start Tue Mar 31 2020 20:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.35986 * 116.99959 * 179.97438 * 4 3 2 6 6 C 1.38699 * 119.99517 * 359.72674 * 5 4 3 7 7 C 1.38142 * 119.99254 * 179.76668 * 6 5 4 8 8 C 1.38696 * 120.00185 * 0.50815 * 7 6 5 9 9 O 1.35972 * 119.99914 * 179.72775 * 8 7 6 10 10 C 1.42905 * 117.00352 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.47412 * 180.02562 * 10 9 8 12 12 O 1.20831 * 119.99607 * 0.02562 * 11 10 9 13 13 O 1.34221 * 119.99912 * 179.97438 * 11 10 9 14 14 C 1.45205 * 116.99895 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47008 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00369 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99649 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99706 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00044 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99852 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00179 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46775 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47057 * 120.00113 * 22 20 18 25 25 H 1.48494 * 109.47564 * 240.00196 * 22 20 18 26 26 C 1.38698 * 120.00033 * 359.73985 * 8 7 6 27 27 C 1.38133 * 119.99925 * 0.02562 * 26 8 7 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 31 31 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 32 32 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 34 34 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 35 35 H 1.07991 * 120.00693 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.99354 * 180.22680 * 7 6 5 37 37 H 1.09001 * 109.46474 * 300.00207 * 10 9 8 38 38 H 1.08997 * 109.46754 * 60.00269 * 10 9 8 39 39 H 1.08997 * 109.47458 * 300.00752 * 14 13 11 40 40 H 1.08997 * 109.46673 * 60.00588 * 14 13 11 41 41 H 0.96995 * 120.00663 * 0.02562 * 17 15 14 42 42 H 0.97001 * 120.00161 * 180.02562 * 21 20 18 43 43 H 1.07993 * 119.99998 * 179.97438 * 26 8 7 44 44 H 1.07998 * 120.00006 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0865 2.6540 -0.0012 6 6 3.3310 3.8172 -0.0070 7 6 3.9583 5.0480 -0.0027 8 6 5.3433 5.1206 -0.0034 9 8 5.9607 6.3321 -0.0048 10 6 5.1208 7.4883 -0.0050 11 6 5.9750 8.7298 -0.0073 12 8 7.1795 8.6343 -0.0091 13 8 5.3978 9.9416 -0.0084 14 6 6.2823 11.0931 -0.0100 15 6 5.4616 12.3569 -0.0104 16 8 4.2503 12.2935 -0.0089 17 7 6.0736 13.5578 -0.0123 18 6 5.3269 14.7076 -0.0122 19 1 4.2483 14.6511 -0.0109 20 6 5.9577 15.9456 -0.0147 21 7 7.2700 16.0144 -0.0178 22 14 4.9404 17.5124 -0.0152 23 1 3.4966 17.1650 -0.0120 24 1 5.2599 18.3103 1.1958 25 1 5.2561 18.3072 -1.2292 26 6 6.0987 3.9573 -0.0028 27 6 5.4716 2.7266 -0.0022 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 2.2526 3.7608 -0.0114 36 1 3.3700 5.9538 -0.0035 37 1 4.4908 7.4795 -0.8945 38 1 4.4923 7.4809 0.8855 39 1 6.9116 11.0691 0.8797 40 1 6.9107 11.0672 -0.9002 41 1 7.0422 13.6086 -0.0138 42 1 7.7104 16.8786 -0.0192 43 1 7.1772 4.0138 -0.0037 44 1 6.0597 1.8208 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731234164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:09 Heat of formation + Delta-G solvation = -172.149095 kcal Electronic energy + Delta-G solvation = -26899.017239 eV Core-core repulsion = 22589.661235 eV Total energy + Delta-G solvation = -4309.356003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92428 -40.34563 -39.30757 -38.15221 -36.90380 -36.07573 -34.29541 -34.04047 -31.56853 -31.42311 -30.35061 -29.01352 -27.69339 -26.89596 -24.65654 -23.55791 -22.46601 -21.72319 -20.96742 -19.63854 -18.90179 -18.23583 -18.06918 -17.51176 -17.01940 -16.80345 -16.70650 -16.08349 -15.69736 -15.48797 -15.17494 -14.69376 -14.59258 -14.44429 -14.04083 -14.01500 -13.82245 -13.62180 -13.27616 -12.93340 -12.90328 -12.55559 -12.43398 -12.38337 -12.02457 -11.97505 -11.65291 -11.64137 -11.34270 -11.17644 -11.06964 -10.71390 -10.50966 -10.45365 -10.41349 -10.31888 -9.64912 -9.42537 -8.57348 -8.11726 -8.07525 -6.52955 -3.95217 0.90824 1.12812 1.98653 2.14459 2.78966 3.09651 3.21876 3.28006 3.38034 3.39387 3.69425 4.07403 4.27989 4.35407 4.40405 4.44001 4.55070 4.68154 4.69274 4.75988 4.79040 4.89915 4.91187 4.98257 5.07302 5.11967 5.15246 5.16855 5.43508 5.46218 5.51855 5.52877 5.64049 5.64094 5.72073 5.93413 5.96919 6.00017 6.21823 6.48072 6.90427 7.12563 7.45187 7.72649 7.91538 8.44605 9.03903 9.35649 9.85044 10.64200 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.001493 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.037645 B =18746.966479 C =19794.649964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.317 6.317 5 C 0.093 3.907 6 C -0.167 4.167 7 C -0.169 4.169 8 C 0.097 3.903 9 O -0.294 6.294 10 C 0.071 3.929 11 C 0.461 3.539 12 O -0.490 6.490 13 O -0.322 6.322 14 C 0.063 3.937 15 C 0.438 3.562 16 O -0.577 6.577 17 N -0.551 5.551 18 C -0.303 4.303 19 H 0.107 0.893 20 C 0.026 3.974 21 N -0.896 5.896 22 Si 0.934 3.066 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.106 4.106 27 C -0.111 4.111 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.395 0.605 42 H 0.274 0.726 43 H 0.141 0.859 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -29.433 0.031 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.232 6.232 5 C 0.048 3.952 6 C -0.186 4.186 7 C -0.187 4.187 8 C 0.052 3.948 9 O -0.207 6.207 10 C -0.005 4.005 11 C 0.302 3.698 12 O -0.377 6.377 13 O -0.237 6.237 14 C -0.015 4.015 15 C 0.222 3.778 16 O -0.461 6.461 17 N -0.188 5.188 18 C -0.432 4.432 19 H 0.125 0.875 20 C -0.177 4.177 21 N -0.536 5.536 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.229 0.771 42 H 0.084 0.916 43 H 0.159 0.841 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.375 -29.433 0.029 30.343 hybrid contribution -0.039 1.190 -0.001 1.190 sum -7.414 -28.243 0.028 29.200 Atomic orbital electron populations 1.21699 0.94195 1.02602 1.02317 1.21481 0.96077 0.94807 1.03720 1.22876 0.78551 0.98862 1.01455 1.86053 1.21165 1.26763 1.89183 1.18877 0.92243 0.84169 0.99875 1.21040 1.00113 0.91594 1.05876 1.21136 0.93225 0.98826 1.05560 1.18872 0.91025 0.84889 1.00041 1.86090 1.34159 1.11204 1.89286 1.21846 0.91615 0.81486 1.05595 1.22845 0.87769 0.85295 0.73932 1.90707 1.15600 1.87418 1.44010 1.86484 1.40567 1.13494 1.83134 1.22817 0.91872 0.82946 1.03819 1.19274 0.88518 0.83816 0.86162 1.90563 1.13657 1.86478 1.55381 1.41704 1.09627 1.03839 1.63640 1.19785 0.92995 0.82240 1.48216 0.87515 1.25318 0.95959 0.99612 0.96805 1.69620 1.07762 1.26704 1.49535 0.85738 0.79857 0.80558 0.77830 1.19077 1.20600 1.20597 1.20265 1.00568 0.88722 1.02858 1.20231 0.91314 0.97803 1.03658 0.91688 0.92304 0.92299 0.90820 0.90820 0.92026 0.92037 0.85105 0.84684 0.87477 0.87471 0.89266 0.89262 0.77110 0.91627 0.84091 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.16 16 2 C -0.12 -0.59 6.30 -26.73 -0.17 -0.76 16 3 C 0.06 0.35 4.74 37.16 0.18 0.53 16 4 O -0.32 -2.81 10.14 -19.70 -0.20 -3.01 16 5 C 0.09 0.87 6.69 -39.24 -0.26 0.61 16 6 C -0.17 -1.44 9.03 -39.45 -0.36 -1.80 16 7 C -0.17 -1.55 9.03 -39.45 -0.36 -1.91 16 8 C 0.10 1.05 6.69 -39.24 -0.26 0.78 16 9 O -0.29 -3.72 9.67 -39.60 -0.38 -4.10 16 10 C 0.07 0.80 5.33 36.01 0.19 0.99 16 11 C 0.46 7.14 8.03 36.01 0.29 7.43 16 12 O -0.49 -8.87 16.25 -25.48 -0.41 -9.29 16 13 O -0.32 -5.74 9.75 -45.88 -0.45 -6.19 16 14 C 0.06 1.17 5.94 36.00 0.21 1.38 16 15 C 0.44 10.36 7.86 -10.99 -0.09 10.27 16 16 O -0.58 -15.72 16.08 -14.11 -0.23 -15.94 16 17 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.11 3.04 7.16 -52.48 -0.38 2.66 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.80 13.05 55.50 0.72 -23.08 16 22 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.11 -1.03 9.98 -39.45 -0.39 -1.43 16 27 C -0.11 -1.00 9.98 -39.45 -0.39 -1.40 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 34 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 35 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 36 H 0.14 0.99 6.29 -52.49 -0.33 0.66 16 37 H 0.11 0.96 7.66 -51.93 -0.40 0.56 16 38 H 0.11 0.96 7.66 -51.93 -0.40 0.56 16 39 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 41 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 44 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -33.70 385.49 -7.39 -41.09 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.89 Total: 6.36 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.28 Total: 6.70 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.67 Total: -36.87 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.67 Total: -38.53 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.70 -7.39 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.063 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds